GCSE Biology Key Words
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Intelligent Design, Abiogenesis, and Learning from History: Dennis R
Author Exchange Intelligent Design, Abiogenesis, and Learning from History: Dennis R. Venema A Reply to Meyer Dennis R. Venema Weizsäcker’s book The World View of Physics is still keeping me very busy. It has again brought home to me quite clearly how wrong it is to use God as a stop-gap for the incompleteness of our knowledge. If in fact the frontiers of knowledge are being pushed back (and that is bound to be the case), then God is being pushed back with them, and is therefore continually in retreat. We are to find God in what we know, not in what we don’t know; God wants us to realize his presence, not in unsolved problems but in those that are solved. Dietrich Bonhoeffer1 am thankful for this opportunity to nature, is the result of intelligence. More- reply to Stephen Meyer’s criticisms over, this assertion is proffered as the I 2 of my review of his book Signature logical basis for inferring design for the in the Cell (hereafter Signature). Meyer’s origin of biological information: if infor- critiques of my review fall into two gen- mation only ever arises from intelli- eral categories. First, he claims I mistook gence, then the mere presence of Signature for an argument against bio- information demonstrates design. A few logical evolution, rendering several of examples from Signature make the point my arguments superfluous. Secondly, easily: Meyer asserts that I have failed to refute … historical scientists can show that his thesis by not providing a “causally a presently acting cause must have adequate alternative explanation” for the been present in the past because the origin of life in that the few relevant cri- proposed candidate is the only known tiques I do provide are “deeply flawed.” cause of the effect in question. -
Standard 2: CELL BIOLOGY – REVIEW of BASICS
Standard 2: CELL BIOLOGY – REVIEW OF BASICS CELL PART OR TYPE OF CELL WHERE FOUND WHAT DOES IT FUNCTION: MISCELLANEOUS ORGANELLE Prokaryotic cell Plant cell LOOK LIKE: Job it does in INFORMATION: things Eukaryotic cell Animal cell Describe or Draw the cell such as color, what it is Both Both made of, size, etc. plasma/cell See diagram Holds cell together Phospholipid bilayer with membrane both both Regulates what goes proteins in/out of cell Semipermeable cytoplasm both Clear thick jelly- Supports/protects both like material in cell cell organelles See diagram Control center nucleus eukaryotic both Contains DNA See diagram Where proteins are ribosome both both made See diagram Process proteins Golgi complex eukaryotic both that go to other /apparatus parts of cell Membrane-bound Digests materials lysosome eukaryotic animal sac of digestive within the cell enzymes Membrane-bound Stores water, food, One large one in plants vacuole eukaryotic both storage area waste and dissolved Many smaller ones in minerals animals endoplasmic Network of Transport materials Can be rough (with reticulum eukaryotic both membrane tubes throughout the cell ribosomes attached) or smooth (without ribosomes) See diagram Where cell respiration Called Powerhouse of cell mitochondria eukaryotic both occurs (releases Makes ATP from energy for cell to use) breaking down glucose See diagram Where photosynthesis Contains chlorophyll chloroplast eukaryotic plant takes place Converts light energy into chemical energy in glucose Some pro- and plant (also fungi Rigid structure -
Introduction to the Cell Cell History Cell Structures and Functions
Introduction to the cell cell history cell structures and functions CK-12 Foundation December 16, 2009 CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and distribution of high quality educational content that will serve both as core text as well as provide an adaptive environment for learning. Copyright ©2009 CK-12 Foundation This work is licensed under the Creative Commons Attribution-Share Alike 3.0 United States License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/us/ or send a letter to Creative Commons, 171 Second Street, Suite 300, San Francisco, California, 94105, USA. Contents 1 Cell structure and function dec 16 5 1.1 Lesson 3.1: Introduction to Cells .................................. 5 3 www.ck12.org www.ck12.org 4 Chapter 1 Cell structure and function dec 16 1.1 Lesson 3.1: Introduction to Cells Lesson Objectives • Identify the scientists that first observed cells. • Outline the importance of microscopes in the discovery of cells. • Summarize what the cell theory proposes. • Identify the limitations on cell size. • Identify the four parts common to all cells. • Compare prokaryotic and eukaryotic cells. Introduction Knowing the make up of cells and how cells work is necessary to all of the biological sciences. Learning about the similarities and differences between cell types is particularly important to the fields of cell biology and molecular biology. -
Bioenergetics and Metabolism Mitochondria Chloroplasts
Bioenergetics and metabolism Mitochondria Chloroplasts Peroxisomes B. Balen Chemiosmosis common pathway of mitochondria, chloroplasts and prokaryotes to harness energy for biological purposes → chemiosmotic coupling – ATP synthesis (chemi) + membrane transport (osmosis) Prokaryotes – plasma membrane → ATP production Eukaryotes – plasma membrane → transport processes – membranes of cell compartments – energy-converting organelles → production of ATP • Mitochondria – fungi, animals, plants • Plastids (chloroplasts) – plants The essential requirements for chemiosmosis source of high-energy e- membrane with embedded proton pump and ATP synthase energy from sunlight or the pump harnesses the energy of e- transfer to pump H+→ oxidation of foodstuffs is proton gradient across the membrane used to create H+ gradient + across a membrane H gradient serves as an energy store that can be used to drive ATP synthesis Figures 14-1; 14-2 Molecular Biology of the Cell (© Garland Science 2008) Electron transport processes (A) mitochondrion converts energy from chemical fuels (B) chloroplast converts energy from sunlight → electron-motive force generated by the 2 photosystems enables the chloroplast to drive electron transfer from H2O to carbohydrate → chloroplast electron transfer is opposite of electron transfer in a mitochondrion Figure 14-3 Molecular Biology of the Cell (© Garland Science 2008) Carbohydrate molecules and O2 are products of the chloroplast and inputs for the mitochondrion Figure 2-41; 2-76 Molecular Biology of the Cell (© Garland -
1 [ Reading for Lecture 7] (1) 2Nd Law of Thermodynamics: Entropy
[ Reading for lecture 7] (1) 2nd law of thermodynamics: Entropy Increases Life Decreases it’s own entropy – at the expense of the rest of the universe Most globally – takes photons (low entropy – straight line !) and converts them ultimately into heat (high entropy), with all of life in- between. To do this, life needs to gather, store and manipulate sources of Free-Energy Free energy can be thought of as the “currency” of life. Any reaction that requires free energy input (eg. making DNA from nucleic acids, doing mechanical work, building a protonmotive force) must be “paid for” by coupling to a reaction that releases free energy. This lecture: Types of biological free-energy, ways and mechanisms in which they are interconverted. These processes are essentially what life is. 1 Types of biological free-energy 2 Protonmotive force (pmf) [Protonmotive Force] (3) Electrical potential plus concentration gradient, H+ or “protons”. (see lecture 6) nb. Nernst potential is the voltage when pmf is zero, at equilibrium. Pmf is a measure of how far from equilibrium the membrane is –the “driving force” for proton transport across the membrane. Generated by active transport of protons across the membrane Free-energy sources: absorption of photons, break-down of food. pH gradient (chemical potential) is necessary if the pmf is to do significant work Very few protons need to be pumped to establish the membrane voltage, BUT… Just like charging a battery, you need to provide current as well as voltage. pH gradient also increases the free energy per proton –diffusion as well as voltage drives protons. -
Cell Growth-Regulated Expression of Mammalian MCM5 and MCM6 Genes Mediated by the Transcription Factor E2F
Oncogene (1999) 18, 2299 ± 2309 ã 1999 Stockton Press All rights reserved 0950 ± 9232/99 $12.00 http://www.stockton-press.co.uk/onc Cell growth-regulated expression of mammalian MCM5 and MCM6 genes mediated by the transcription factor E2F Kiyoshi Ohtani1, Ritsuko Iwanaga1, Masataka Nakamura*,1, Masa-aki Ikeda2, Norikazu Yabuta3, Hiromichi Tsuruga3 and Hiroshi Nojima3 1Human Gene Sciences Center, Tokyo Medical and Dental University, Tokyo 113-8510, Japan 2Department of Developmental Biology, Graduate School of Dentistry, Tokyo Medical and Dental University, Tokyo 113-8549, Japan; 3Department of Molecular Genetics, Research Institute for Microbial Diseases, Osaka University, Suita 565-0871, Japan Initiation of DNA replication requires the function of family (MCM2-7) that have been identi®ed in yeast, MCM gene products, which participate in ensuring that Xenopus, and human. Mcm proteins seem to regulate DNA replication occurs only once in the cell cycle. the initiation at the replication origin where the loading Expression of all mammalian genes of the MCM family of the proteins onto the origin recognition complex is induced by growth stimulation, unlike yeast, and the (ORC) is regulated by Cdc6 and cyclin-dependent mRNA levels peak at G1/S boundary. In this study, we kinases (Donovan et al., 1997; Tanaka et al., 1997). examined the transcriptional activities of isolated human However, the mechanism(s) by which Mcm proteins MCM gene promoters. Human MCM5 and MCM6 control the initiation of DNA replication remains promoters with mutation in the E2F sites failed in unclear. promoter regulation following serum stimulation and Xenopus Mcm proteins seem to be able to access exogenous E2F expression. -
Biochemistry Biotechnology Cell Biology
Undergraduate Biochemistry Opportunities www.ed.ac.uk/biology Biotechnology Cell Biology Biochem_Biotech_CellBio_A5.indd 1 21/05/2019 14:25 Biochemistry The programme combines coverage of the Biochemistry is the study of living systems at basic principles and knowledge underpinning the cellular and molecular level. This dynamic biotechnology and an appreciation of the field draws on a variety of subjects and has processes involved in converting an idea widespread application. Biochemistry applies a into a product. The objective is to provide a knowledge of chemistry and physical sciences firm foundation in molecular and microbial to investigate basic life processes. The subject biotechnology through compulsory sections has a major impact on modern medical research dealing with topics such as expression vectors, and upon the pharmaceutical, bioengineering, microbial fermentation, protein structure, drug agricultural and environmental industries. design and the development of antimicrobials and vaccines. The programme encourages the critical assessment of current developments in areas of Cell Biology biological interest. Modern cell biology is a dynamic discipline that combines the interests and techniques of many Biotechnology scientific fields. Cell biologists investigate the Biotechnology is concerned with industrial basic structural and functional units of life, the and biomedical applications of fundamental cells that compose all living organisms. They aim knowledge derived from biology. This covers to understand: cellular structure, composition many facets from making useful products and regulation, the organelles that cells contain, using microbial, plant or animal cells to using cell growth, nuclear and cellular division, and bioinformatics and structural biology to design cell death. Understanding how cells work is new drugs. Biotechnology is an exciting area fundamental to many areas of biology and is of with new developments each year in areas that particular importance to fields such as cancer affect us all. -
Independent Research Resources Demonstrations/Simulations
Independent Research Resources Independent Generation of Research (IGoR) - IGoR provides a platform for people to pool their knowledge, resources, time, and creativity so that everyone can pursue their own scientific curiosity. Virginia Junior Academy of Science Resource Library - Extensive collection of open-access resources for students in Biology & Medicine, Botany, Ecology, Environmental Sciences, Chemistry, Engineering and Physics The Society for Science and the Public Science Project Resources - A catalog of science resources that can support your quest to learn and do science Science Buddies - Ideas for science projects Teacher resources National Center for Science Education Scientist in the Classroom - Platform allows teachers to request classroom visits from scientists Genetics Education Outreach Network (GEON) - Network of genetics professionals HHMI BioInteractive Data Points - Explore and interpret primary data from published research Biotech in a Box Loan Kits - Shipped to your school from Fralin Life Sciences Institute at Virginia Tech Demonstrations/Simulations Genetic Science Learning Center- Simulations, videos and interactive activities that explore genetics, cell biology, neuroscience, ecology and health Remotely Accessible Instruments for Nanotechnology (RAIN) - Access and control nanoinstruments over the Internet in real-time with the assistance of an experienced engineer PhET Simulations - Interactive STEM simulations for all grade levels HHMI BioInteractive Interactive Media - Recommendations: Virus Explorer; Exploring -
Bioenergetics, ATP & Enzymes
Bioenergetics, ATP & Enzymes Some Important Compounds Involved in Energy Transfer and Metabolism Bioenergetics can be defined as all the energy transfer mechanisms occurring within living organisms. Energy transfer is necessary because energy cannot be created and it cannot be destroyed (1st law of thermodynamics). Organisms can acquire energy from chemicals (chemotrophs) or they can acquire it from light (phototrophs), but they cannot make it. Thermal energy (heat) from the environment can influence the rate of chemical reactions, but is not generally considered an energy source organisms can “capture” and put to specific uses. Metabolism, all the chemical reactions occurring within living organisms, is linked to bioenergetics because catabolic reactions release energy (are exergonic) and anabolic reactions require energy (are endergonic). Various types of high-energy compounds can “donate” the energy required to drive endergonic reactions, but the most commonly used energy source within cells is adenosine triphosphate (ATP), a type of coenzyme. When this molecule is catabolized (broken down), the energy released can be used to drive a wide variety of synthesis reactions. Endergonic reactions required for the synthesis of nucleic acids (DNA and RNA) are exceptions because all the nucleotides incorporated into these molecules are initially high-energy molecules as described below. The nitrogenous base here is adenine, the sugar is the pentose monosaccharide ribose and there are three phosphate groups attached. The sugar and the base form a molecule called a nucleoside, and the number of phosphate groups bound to the nucleoside is variable; thus alternative forms of this molecule occur as adenosine monophosphate (AMP) and adenosine diphosphate (ADP). -
Cell Life Cycle and Reproduction the Cell Cycle (Cell-Division Cycle), Is a Series of Events That Take Place in a Cell Leading to Its Division and Duplication
Cell Life Cycle and Reproduction The cell cycle (cell-division cycle), is a series of events that take place in a cell leading to its division and duplication. The main phases of the cell cycle are interphase, nuclear division, and cytokinesis. Cell division produces two daughter cells. In cells without a nucleus (prokaryotic), the cell cycle occurs via binary fission. Interphase Gap1(G1)- Cells increase in size. The G1checkpointcontrol mechanism ensures that everything is ready for DNA synthesis. Synthesis(S)- DNA replication occurs during this phase. DNA Replication The process in which DNA makes a duplicate copy of itself. Semiconservative Replication The process in which the DNA molecule uncoils and separates into two strands. Each original strand becomes a template on which a new strand is constructed, resulting in two DNA molecules identical to the original DNA molecule. Gap 2(G2)- The cell continues to grow. The G2checkpointcontrol mechanism ensures that everything is ready to enter the M (mitosis) phase and divide. Mitotic(M) refers to the division of the nucleus. Cell growth stops at this stage and cellular energy is focused on the orderly division into daughter cells. A checkpoint in the middle of mitosis (Metaphase Checkpoint) ensures that the cell is ready to complete cell division. The final event is cytokinesis, in which the cytoplasm divides and the single parent cell splits into two daughter cells. Reproduction Cellular reproduction is a process by which cells duplicate their contents and then divide to yield multiple cells with similar, if not duplicate, contents. Mitosis Mitosis- nuclear division resulting in the production of two somatic cells having the same genetic complement (genetically identical) as the original cell. -
Deciphering Genetic Determinants of Cell Growth by Single-Cell RNA Sequencing Deregulated Growth Is a Hallmark of Human Diseases
Deciphering genetic determinants of cell growth by single-cell RNA sequencing Deregulated growth is a hallmark of human diseases such as cancer. A wide range of therapeutic approaches target proliferating cells effectively through inhibition of pathways related to growth and division. However, cells can often escape arrest due to the genetic and phenotypic heterogeneity present in cancer cell populations leading to relapse of the disease. Likewise, heterogeneity in gene expression makes treatment of persistent microbial infections an important challenge for human health. Identifying genetic and non-genetic features that can drive individual cells to overcome growth inhibition is therefore required to understand disease progression and resistance. Recent experimental protocols made it possible to characterise the transcriptomes and genotypes of single cells simultaneously. These opened the door to investigate the dynamics and heterogeneity of gene expression in population of cells with variable genotypes. These methods are technically challenging, generate large amounts of complex data, and require the development of state-of-the-art computational methods for their analysis. Yet, when coupled with mathematical modelling of cell physiology, these single cells approaches have an unprecedented potential to unravel complex genetic and gene expression programmes that underlie growth dynamics of cell populations. This project aims at: i) understanding the genetic basis of cell growth under conditions were gene expression or proliferation are compromised by associating high fitness genotypes to transcriptome signatures in single cells, ii) develop computational tools to integrate single-cell and population level genotyping and gene expression data, iii) improve selected aspect of the laboratory single-cell RNA-seq protocol to improve data quality. -
How Genes Work
Help Me Understand Genetics How Genes Work Reprinted from MedlinePlus Genetics U.S. National Library of Medicine National Institutes of Health Department of Health & Human Services Table of Contents 1 What are proteins and what do they do? 1 2 How do genes direct the production of proteins? 5 3 Can genes be turned on and off in cells? 7 4 What is epigenetics? 8 5 How do cells divide? 10 6 How do genes control the growth and division of cells? 12 7 How do geneticists indicate the location of a gene? 16 Reprinted from MedlinePlus Genetics (https://medlineplus.gov/genetics/) i How Genes Work 1 What are proteins and what do they do? Proteins are large, complex molecules that play many critical roles in the body. They do most of the work in cells and are required for the structure, function, and regulation of thebody’s tissues and organs. Proteins are made up of hundreds or thousands of smaller units called amino acids, which are attached to one another in long chains. There are 20 different types of amino acids that can be combined to make a protein. The sequence of amino acids determineseach protein’s unique 3-dimensional structure and its specific function. Aminoacids are coded by combinations of three DNA building blocks (nucleotides), determined by the sequence of genes. Proteins can be described according to their large range of functions in the body, listed inalphabetical order: Antibody. Antibodies bind to specific foreign particles, such as viruses and bacteria, to help protect the body. Example: Immunoglobulin G (IgG) (Figure 1) Enzyme.