First Findings of the Benthic Macroalgae Vaucheria Cf. Dichotoma (Xanthophyceae) and Punctaria Tenuissima (Phaeophyceae) in Estonian Coastal Waters
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Chemical Signaling in Diatom-Parasite Interactions
Friedrich-Schiller-Universität Jena Chemisch-Geowissenschaftliche Fakultät Max-Planck-Institut für chemische Ökologie Chemical signaling in diatom-parasite interactions Masterarbeit zur Erlangung des akademischen Grades Master of Science (M. Sc.) im Studiengang Chemische Biologie vorgelegt von Alina Hera geb. am 30.03.1993 in Kempten Erstgutachter: Prof. Dr. Georg Pohnert Zweitgutachter: Dr. rer. nat. Thomas Wichard Jena, 21. November 2019 Table of contents List of Abbreviations ................................................................................................................ III List of Figures .......................................................................................................................... IV List of Tables ............................................................................................................................. V 1. Introduction ............................................................................................................................ 1 2. Objectives of the Thesis ....................................................................................................... 11 3. Material and Methods ........................................................................................................... 12 3.1 Materials ......................................................................................................................... 12 3.2 Microbial strains and growth conditions ........................................................................ 12 3.3 -
Insights Into Alexandrium Minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis Through Comprehensive Transcriptome Survey
biology Article Insights into Alexandrium minutum Nutrient Acquisition, Metabolism and Saxitoxin Biosynthesis through Comprehensive Transcriptome Survey Muhamad Afiq Akbar 1, Nurul Yuziana Mohd Yusof 2 , Fathul Karim Sahrani 2, Gires Usup 2, Asmat Ahmad 1, Syarul Nataqain Baharum 3 , Nor Azlan Nor Muhammad 3 and Hamidun Bunawan 3,* 1 Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; muhdafi[email protected] (M.A.A.); [email protected] (A.A.) 2 Department of Earth Science and Environment, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (N.Y.M.Y.); [email protected] (F.K.S.); [email protected] (G.U.) 3 Institute of System Biology, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia; [email protected] (S.N.B.); [email protected] (N.A.N.M.) * Correspondence: [email protected]; Tel.: +60-389-214-570 Simple Summary: Alexandrium minutum is one of the causing organisms for the occurrence of harmful algae bloom (HABs) in marine ecosystems. This species produces saxitoxin, one of the deadliest neurotoxins which can cause human mortality. However, molecular information such as genes and proteins catalog on this species is still lacking. Therefore, this study has successfully Citation: Akbar, M.A.; Yusof, N.Y.M.; characterized several new molecular mechanisms regarding A. minutum environmental adaptation Sahrani, F.K.; Usup, G.; Ahmad, A.; and saxitoxin biosynthesis. Ultimately, this study provides a valuable resource for facilitating future Baharum, S.N.; Muhammad, N.A.N.; dinoflagellates’ molecular response to environmental changes. -
Phylogeny and Morphology of a Chattonella (Raphidophyceae) Species from the Mediterranean Sea: What Is C
This article was downloaded by: [Stiftung Alfred Wegener Institute für Polar- und Meeresforschung ] On: 17 April 2013, At: 02:13 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK European Journal of Phycology Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/tejp20 Phylogeny and morphology of a Chattonella (Raphidophyceae) species from the Mediterranean Sea: what is C. subsalsa? Sascha Klöpper a , Uwe John a , Adriana Zingone b , Olga Mangoni c , Wiebe H.C.F. Kooistra b & Allan D. Cembella a a Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570, Bremerhaven, Germany b Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy c Department of Biological Sciences, University Federico II, Via Mezzocannone 8, 80138, Naples, Italy Version of record first published: 13 Mar 2013. To cite this article: Sascha Klöpper , Uwe John , Adriana Zingone , Olga Mangoni , Wiebe H.C.F. Kooistra & Allan D. Cembella (2013): Phylogeny and morphology of a Chattonella (Raphidophyceae) species from the Mediterranean Sea: what is C. subsalsa?, European Journal of Phycology, 48:1, 79-92 To link to this article: http://dx.doi.org/10.1080/09670262.2013.771412 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and-conditions This article may be used for research, teaching, and private study purposes. Any substantial or systematic reproduction, redistribution, reselling, loan, sub-licensing, systematic supply, or distribution in any form to anyone is expressly forbidden. -
Is Occurrence of Harmful Algal Blooms in the Exclusive Economic Zone of India on the Rise?
Hindawi Publishing Corporation International Journal of Oceanography Volume 2012, Article ID 263946, 7 pages doi:10.1155/2012/263946 Research Article Is Occurrence of Harmful Algal Blooms in the Exclusive Economic Zone of India on the Rise? K. B. Padmakumar,1 N. R. Menon,2 and V. N. Sanjeevan1 1 Centre for Marine Living Resources and Ecology, Ministry of Earth Sciences, Kochi 37, Kerala, India 2 School of Marine Sciences, Cochin University of Science and Technology and Nansen Environmental Research Center, Kochi 16, Kerala, India CorrespondenceshouldbeaddressedtoK.B.Padmakumar,[email protected] Received 4 November 2011; Revised 30 December 2011; Accepted 13 January 2012 Academic Editor: Robert Frouin Copyright © 2012 K. B. Padmakumar et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Occurrence, increase in frequency, intensity and spatial coverage of harmful algal blooms during the past decade in the EEZ of India are documented here. Eighty algal blooms were recorded during the period 1998–2010. Of the eighty algal blooms, 31 blooms were formed by dinoflagellates, 27 by cyanobacteria, and 18 by diatoms. Three raphidophyte and one haptophyte blooms were also observed. Potentially toxic microalgae recorded from the Indian waters were Alexandrium spp., Gymnodinium spp. Dinophysis spp., Coolia monotis, Prorocentrum lima,andPseudo-nitzschia spp. Examination of available data from the literature during the last hundred years and in situ observations during 1998–2010 indicates clear-cut increase in the occurrence of HABs in the Indian EEZ. 1. -
Marine Phytoplankton Atlas of Kuwait's Waters
Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas of Kuwait’s of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie ISBN: 99906-41-24-2 Kuwait Institute for Scientific Research P.O.Box 24885, Safat - 13109, Kuwait Tel: (965) 24989000 – Fax: (965) 24989399 www.kisr.edu.kw Marine Phytoplankton Atlas of Kuwait’s Waters Published in Kuwait in 2009 by Kuwait Institute for Scientific Research, P.O.Box 24885, 13109 Safat, Kuwait Copyright © Kuwait Institute for Scientific Research, 2009 All rights reserved. ISBN 99906-41-24-2 Design by Melad M. Helani Printed and bound by Lucky Printing Press, Kuwait No part of this work may be reproduced or utilized in any form or by any means electronic or manual, including photocopying, or by any information or retrieval system, without the prior written permission of the Kuwait Institute for Scientific Research. 2 Kuwait Institute for Scientific Research - Marine phytoplankton Atlas Kuwait Institute for Scientific Research Marine Phytoplankton Atlas of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie Kuwait Institute for Scientific Research Kuwait Kuwait Institute for Scientific Research - Marine phytoplankton Atlas 3 TABLE OF CONTENTS CHAPTER 1: MARINE PHYTOPLANKTON METHODOLOGY AND GENERAL RESULTS INTRODUCTION 16 MATERIAL AND METHODS 18 Phytoplankton Collection and Preservation Methods 18 Sample Analysis 18 Light Microscope (LM) Observations 18 Diatoms Slide Preparation -
M339p083.Pdf
MARINE ECOLOGY PROGRESS SERIES Vol. 339: 83–92, 2007 Published June 6 Mar Ecol Prog Ser Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo Yasuhiro Yamasaki1,*, Sou Nagasoe1, 2, Tadashi Matsubara1, Tomoyuki Shikata1, Yohei Shimasaki1, Yuji Oshima1, Tsuneo Honjo1 1Laboratory of Marine Environmental Science, Division of Marine Biological Chemistry, Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan 2Present address: Harmful Algal Bloom Division, National Research Institute of Fisheries and Environment of Inlannd Sea, 2-17-5 Maruishi, Hatsukaichi, Hiroshima 739-0452, Japan ABSTRACT: We investigated growth interactions between Skeletonema costatum (Greville) Cleve and Heterosigma akashiwo (Hada) Hada ex Hara et Chihara using bi-algal cultures under axenic conditions. When inoculated at high cell densities, growth of both species was coincidentally sup- pressed. In other combinations of inoculation density, the species first reaching stationary phase sub- stantially reduced maximum cell densities of the other species. When cultured together under condi- tions without cell contact, growth of S. costatum and H. akashiwo were both suppressed. Furthermore, despite re-enrichment with nutrients, filtrates from dense cultures of S. costatum and H. akashiwo reciprocally reduced their maximum cell densities. In additional experiments, growth of Chaetoceros muelleri was also suppressed with filtrates from the above cultures, but growth of Pro- rocentrum minimum was not. Therefore, growth interactions between these species strongly suggest the involvement of allelopathic substances secreted by both species. Finally, growth and interaction of S. costatum and H. akashiwo in bi-algal cultures were simulated using a mathematical model. -
Heterosigma Akashiwo on Industrial Emissions
Growth and Flocculation of Heterosigma akashiwo on Industrial Emissions Jennifer J. Stewart1 Colleen M. Bianco1 Mark E. Warner1 Katherine R. Miller2 Kathryn J. Coyne1 1University of Delaware CEOE 2Salisbury University Algae Biomass Summit 2013 Heterosigma akashiwo Raphidophyte Globally prevalent Forms dense blooms in excess of 107 cells * L-1 Growth Rate (m) up to 1 No rigid cell wall 10-15 mm Mixotrophic Vertical Migrator Can accumulate high amounts of lipids (up to 73% dry weight under N- limitation; Fuentes- www.eweb.furman.edu Grünewald et al. 2012) Heterosigma akashiwo Optimum growth maintained over a wide range of salinity (10-30 psu) and temperature (16-30°C) Tolerates nutrient limitation and high light stress Resistant to crashing Exhibits no strong preference for nitrogen - - + source (NO3 , NO2 , NH4 ) Photo by L. Salvitti Nitrate Metabolism in Microalgae Nitrate Reductase NO - catalyzes the rate- 3 limiting step in nitrate NO - NO - NH + assimilation 3 2 4 NR NiR e- Rubisco Amino Acids Proteins Highly conserved in CO2 PGA plants and algae PSII Carbohydrates Lipids hv >2200 eukaryotic NR (Modified from Lomas & Glibert, 1999) sequences in the NCBI Entrez Protein Database Novel Nitrate Reductase (NR2-2/2HbN) NR1 NR2 Found in Heterosigma akashiwo (4 strains) and Chattonella subsalsa Stewart & Coyne. 2011. Analysis of raphidophyte assimilatory nitrate reductase reveals unique domain architecture incorporating a 2/2 hemoglobin. Plant Mol Biol 77:565–575 Theoretical Mechanism of NR2-2/2HbN Currently Under Investigation Dual NO dioxygenase and Nitrate Reductase Activities 5 e- when fully reduced: 2 e- accepted by FAD, 1e- by heme- Fe, and 2e- by Mo-MPT Univalent reduction of both heme-Fe centers possible Nitrate captured Experimental Addition of Nitric Oxide to Cell Cultures Cultures reduce the NR2-2/2HbN transcript concentration of dissolved expression increases in NO in liquid medium response to NO H. -
A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae
GBE A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae Tereza Sˇevcˇı´kova´ 1,Vladimı´r Klimesˇ1, Veronika Zbra´nkova´ 1, Hynek Strnad2,Milusˇe Hroudova´ 2,Cˇ estmı´rVlcˇek2, and Marek Elia´sˇ1,* 1Department of Biology and Ecology & Institute of Environmental Technologies, Faculty of Science, University of Ostrava, Czech Republic 2Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Prague, Czech Republic *Corresponding author: E-mail: [email protected]. Accepted: February 8, 2016 Data deposition: The newly determined mitogenome sequences were deposited at GenBank with accession numbers KU501220–KU501222. Individual gene or cDNA sequences extracted from unpublished nuclear genome or transcriptome assemblies were deposited at GenBank with accession numbers KU501223–KU501236. Abstract Eustigmatophyceae (Ochrophyta, Stramenopiles) is a small algal group with species of the genus Nannochloropsis being its best studied representatives. Nuclear and organellar genomes have been recently sequenced for several Nannochloropsis spp., but phylogenetically wider genomic studies are missing for eustigmatophytes. We sequenced mitochondrial genomes (mitogenomes) of three species representing most major eustigmatophyte lineages, Monodopsis sp. MarTras21, Vischeria sp. CAUP Q 202 and Trachydiscus minutus, and carried out their comparative analysis in the context of available data from Nannochloropsis and other stramenopiles, revealing a number of noticeable findings. First, mitogenomes of most eustigmatophytes are highly collinear and similar in the gene content, but extensive rearrangements and loss of three otherwise ubiquitous genes happened in the Vischeria lineage; this correlates with an accelerated evolution of mitochondrial gene sequences in this lineage. Second, eustigmatophytes appear to be the only ochrophyte group with the Atp1 protein encoded by the mitogenome. -
Kingdom Chromista)
J Mol Evol (2006) 62:388–420 DOI: 10.1007/s00239-004-0353-8 Phylogeny and Megasystematics of Phagotrophic Heterokonts (Kingdom Chromista) Thomas Cavalier-Smith, Ema E-Y. Chao Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK Received: 11 December 2004 / Accepted: 21 September 2005 [Reviewing Editor: Patrick J. Keeling] Abstract. Heterokonts are evolutionarily important gyristea cl. nov. of Ochrophyta as once thought. The as the most nutritionally diverse eukaryote supergroup zooflagellate class Bicoecea (perhaps the ancestral and the most species-rich branch of the eukaryotic phenotype of Bigyra) is unexpectedly diverse and a kingdom Chromista. Ancestrally photosynthetic/ major focus of our study. We describe four new bicil- phagotrophic algae (mixotrophs), they include several iate bicoecean genera and five new species: Nerada ecologically important purely heterotrophic lineages, mexicana, Labromonas fenchelii (=Pseudobodo all grossly understudied phylogenetically and of tremulans sensu Fenchel), Boroka karpovii (=P. uncertain relationships. We sequenced 18S rRNA tremulans sensu Karpov), Anoeca atlantica and Cafe- genes from 14 phagotrophic non-photosynthetic het- teria mylnikovii; several cultures were previously mis- erokonts and a probable Ochromonas, performed ph- identified as Pseudobodo tremulans. Nerada and the ylogenetic analysis of 210–430 Heterokonta, and uniciliate Paramonas are related to Siluania and revised higher classification of Heterokonta and its Adriamonas; this clade (Pseudodendromonadales three phyla: the predominantly photosynthetic Och- emend.) is probably sister to Bicosoeca. Genetically rophyta; the non-photosynthetic Pseudofungi; and diverse Caecitellus is probably related to Anoeca, Bigyra (now comprising subphyla Opalozoa, Bicoecia, Symbiomonas and Cafeteria (collectively Anoecales Sagenista). The deepest heterokont divergence is emend.). Boroka is sister to Pseudodendromonadales/ apparently between Bigyra, as revised here, and Och- Bicoecales/Anoecales. -
Phylogeography of the Freshwater Raphidophyte Gonyostomum Semen Confirms a Recent Expansion in Northern Europe by a Single Haplotype1
J. Phycol. 51, 768–781 (2015) © 2015 The Authors. Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and dis- tribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. DOI: 10.1111/jpy.12317 PHYLOGEOGRAPHY OF THE FRESHWATER RAPHIDOPHYTE GONYOSTOMUM SEMEN CONFIRMS A RECENT EXPANSION IN NORTHERN EUROPE BY A SINGLE HAPLOTYPE1 Karen Lebret,2 Sylvie V. M. Tesson, Emma S. Kritzberg Department of Biology, Lund University, Ecology Building, Lund SE-22362, Sweden Carmelo Tomas University of North Carolina at Wilmington, Center for Marine Science, Myrtle Grove 2336, Wilmington, North Carolina, USA and Karin Rengefors Department of Biology, Lund University, Ecology Building, Lund SE-22362, Sweden Gonyostmum semen is a freshwater raphidophyte DNA region; SSU, small subunit of the ribosomal that has increased in occurrence and abundance in DNA region several countries in northern Europe since the 1980s. More recently, the species has expanded rapidly also in north-eastern Europe, and it is frequently referred to as invasive. To better Raphidophytes are planktonic autotrophic protists, understand the species history, we have explored which form blooms in both marine and limnic envi- the phylogeography of G. semen using strains from ronments. Many raphidophyte species are consid- northern Europe, United States, and Japan. Three ered harmful, causing for instance mass mortality in regions of the ribosomal RNA gene (small subunit fish due to toxin production (Edvardsen and Imai [SSU], internal transcribed spacer [ITS] and large 2006). -
Harmful Algal Bloom-Forming Organism Responds to Nutrient Stress Distinctly from Model 2 Phytoplankton 3 4 Craig Mclean1,2,*, Sheean T
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.08.430350; this version posted February 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Harmful Algal Bloom-Forming Organism Responds to Nutrient Stress Distinctly From Model 2 Phytoplankton 3 4 Craig McLean1,2,*, Sheean T. Haley3, Gretchen J. Swarr1, Melissa C. Kido Soule1, Sonya T. 5 Dyhrman3,4, and Elizabeth B. Kujawinski1 6 1 Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, 7 Woods Hole, Massachusetts 02543, United States 8 2 MIT/WHOI Joint Program in Oceanography/Applied Ocean Science and Engineering, 9 Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, 10 Woods Hole, Massachusetts 02543, United States 11 3 Biology and Paleo Environment Division, Lamont-Doherty Earth Observatory, Columbia 12 University, Palisades, NY, 10964 USA 13 4 Department of Earth and Environmental Sciences, Columbia University, Palisades, NY, 10964 14 USA 15 16 * - corresponding author – [email protected] 17 Total Word Count: 6057 18 Introduction Word Count: 611 19 Methods Word Count: 1945 20 Results & Discussion Word Count: 3298 21 Conclusion Word Count: 197 22 Color Figs: Figs 1-5 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.08.430350; this version posted February 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
A Novel Method Based on Backscattering for Discriminating
remote sensing Article A Novel Method Based on Backscattering for Discriminating Summer Blooms of the Raphidophyte (Chattonella spp.) and the Diatom (Skeletonema spp.) Using MODIS Images in Ariake Sea, Japan Chi Feng 1, Joji Ishizaka 2,* , Katsuya Saitoh 3, Takayuki Mine 4 and Hirokazu Yamashita 5 1 Graduate School of Environmental Studies, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan; [email protected] 2 Institute for Space-Earth Environmental Research (ISEE), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan 3 Japan Fisheries Information Service Center, 4-5, Toyomicho, Toyomishinko Bldg. 6F., Chuo-ku 104-0055, Japan; ksaitoh@jafic.or.jp 4 Saga Ariake Fisheries Promotion Center, 1-1-59, Jonai, Saga 840-8570, Japan; [email protected] 5 Kumamoto Prefectural Fisheries Research Center, 1-11-1, Higashisakura, Higashi Ward, Nagoya, Aichi 461-0005, Japan; [email protected] * Correspondence: [email protected]; Tel.: +86-052-789-3487 Received: 3 April 2020; Accepted: 4 May 2020; Published: 8 May 2020 Abstract: The raphidophyte Chattonella spp. and diatom Skeletonema spp. are the dominant harmful algal species of summer blooms in Ariake Sea, Japan. A new bio-optical algorithm based on backscattering features has been developed to differentiate harmful raphidophyte blooms from diatom blooms using MODIS imagery. Bloom waters were first discriminated from other water types based on the distinct spectral shape of the remote sensing reflectance Rrs(λ) data derived from MODIS. Specifically, bloom waters were discriminated by the positive value of Spectral Shape, SS (645), which arises from the Rrs(λ) shoulder at 645 nm in bloom waters.