Classification of Algae Diatoms Stoneworts Chlorophyta
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Early Photosynthetic Eukaryotes Inhabited Low-Salinity Habitats
Early photosynthetic eukaryotes inhabited PNAS PLUS low-salinity habitats Patricia Sánchez-Baracaldoa,1, John A. Ravenb,c, Davide Pisanid,e, and Andrew H. Knollf aSchool of Geographical Sciences, University of Bristol, Bristol BS8 1SS, United Kingdom; bDivision of Plant Science, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; cPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; dSchool of Biological Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; eSchool of Earth Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; and fDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138 Edited by Peter R. Crane, Oak Spring Garden Foundation, Upperville, Virginia, and approved July 7, 2017 (received for review December 7, 2016) The early evolutionary history of the chloroplast lineage remains estimates for the origin of plastids ranging over 800 My (7). At the an open question. It is widely accepted that the endosymbiosis that same time, the ecological setting in which this endosymbiotic event established the chloroplast lineage in eukaryotes can be traced occurred has not been fully explored (8), partly because of phy- back to a single event, in which a cyanobacterium was incorpo- logenetic uncertainties and preservational biases of the fossil re- rated into a protistan host. It is still unclear, however, which cord. Phylogenomics and trait evolution analysis have pointed to a Cyanobacteria are most closely related to the chloroplast, when the freshwater origin for Cyanobacteria (9–11), providing an approach plastid lineage first evolved, and in what habitats this endosym- to address the early diversification of terrestrial biota for which the biotic event occurred. -
Seed Plant Models
Review Tansley insight Why we need more non-seed plant models Author for correspondence: Stefan A. Rensing1,2 Stefan A. Rensing 1 2 Tel: +49 6421 28 21940 Faculty of Biology, University of Marburg, Karl-von-Frisch-Str. 8, 35043 Marburg, Germany; BIOSS Biological Signalling Studies, Email: stefan.rensing@biologie. University of Freiburg, Sch€anzlestraße 18, 79104 Freiburg, Germany uni-marburg.de Received: 30 October 2016 Accepted: 18 December 2016 Contents Summary 1 V. What do we need? 4 I. Introduction 1 VI. Conclusions 5 II. Evo-devo: inference of how plants evolved 2 Acknowledgements 5 III. We need more diversity 2 References 5 IV. Genomes are necessary, but not sufficient 3 Summary New Phytologist (2017) Out of a hundred sequenced and published land plant genomes, four are not of flowering plants. doi: 10.1111/nph.14464 This severely skewed taxonomic sampling hinders our comprehension of land plant evolution at large. Moreover, most genetically accessible model species are flowering plants as well. If we are Key words: Charophyta, evolution, fern, to gain a deeper understanding of how plants evolved and still evolve, and which of their hornwort, liverwort, moss, Streptophyta. developmental patterns are ancestral or derived, we need to study a more diverse set of plants. Here, I thus argue that we need to sequence genomes of so far neglected lineages, and that we need to develop more non-seed plant model species. revealed much, the exact branching order and evolution of the I. Introduction nonbilaterian lineages is still disputed (Lanna, 2015). Research on animals has for a long time relied on a number of The first (small) plant genome to be sequenced was of THE traditional model organisms, such as mouse, fruit fly, zebrafish or model plant, the weed Arabidopsis thaliana (c. -
28-Protistsf20r.Ppt [Compatibility Mode]
9/3/20 Ch 28: The Protists (a.k.a. Protoctists) (meet these in more detail in your book and lab) 1 Protists invent: eukaryotic cells size complexity Remember: 1°(primary) endosymbiosis? -> mitochondrion -> chloroplast genome unicellular -> multicellular 2 1 9/3/20 For chloroplasts 2° (secondary) happened (more complicated) {3°(tertiary) happened too} 3 4 Eukaryotic “supergroups” (SG; between K and P) 4 2 9/3/20 Protists invent sex: meiosis and fertilization -> 3 Life Cycles/Histories (Fig 13.6) Spores and some protists (Humans do this one) 5 “Algae” Group PS Pigments Euglenoids chl a & b (& carotenoids) Dinoflagellates chl a & c (usually) (& carotenoids) Diatoms chl a & c (& carotenoids) Xanthophytes chl a & c (& carotenoids) Chrysophytes chl a & c (& carotenoids) Coccolithophorids chl a & c (& carotenoids) Browns chl a & c (& carotenoids) Reds chl a, phycobilins (& carotenoids) Greens chl a & b (& carotenoids) (more groups exist) 6 3 9/3/20 Name word roots (indicate nutrition) “algae” (-phyt-) protozoa (no consistent word ending) “fungal-like” (-myc-) Ecological terms plankton phytoplankton zooplankton 7 SG: Excavata/Excavates “excavated” feeding groove some have reduced mitochondria (e.g.: mitosomes, hydrogenosomes) 8 4 9/3/20 SG: Excavata O: Diplomonads: †Giardia Cl: Parabasalids: Trichonympha (bk only) †Trichomonas P: Euglenophyta/zoa C: Kinetoplastids = trypanosomes/hemoflagellates: †Trypanosoma C: Euglenids: Euglena 9 SG: “SAR” clade: Clade Alveolates cell membrane 10 5 9/3/20 SG: “SAR” clade: Clade Alveolates P: Dinoflagellata/Pyrrophyta: -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
Outer Continental Shelf Environmental Assessment Program, Final Reports of Principal Investigators. Volume 71
Outer Continental Shelf Environmental Assessment Program Final Reports of Principal Investigators Volume 71 November 1990 U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Ocean Service Office of Oceanography and Marine Assessment Ocean Assessments Division Alaska Office U.S. DEPARTMENT OF THE INTERIOR Minerals Management Service Alaska OCS Region OCS Study, MMS 90-0094 "Outer Continental Shelf Environmental Assessment Program Final Reports of Principal Investigators" ("OCSEAP Final Reports") continues the series entitled "Environmental Assessment of the Alaskan Continental Shelf Final Reports of Principal Investigators." It is suggested that reports in this volume be cited as follows: Horner, R. A. 1981. Bering Sea phytoplankton studies. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 1-149. McGurk, M., D. Warburton, T. Parker, and M. Litke. 1990. Early life history of Pacific herring: 1989 Prince William Sound herring egg incubation experiment. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 151-237. McGurk, M., D. Warburton, and V. Komori. 1990. Early life history of Pacific herring: 1989 Prince William Sound herring larvae survey. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 239-347. Thorsteinson, L. K., L. E. Jarvela, and D. A. Hale. 1990. Arctic fish habitat use investi- gations: nearshore studies in the Alaskan Beaufort Sea, summer 1988. U.S. Dep. Commer., NOAA, OCSEAP Final Rep. 71: 349-485. OCSEAP Final Reports are published by the U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Ocean Service, Ocean Assessments Division, Alaska Office, Anchorage, and primarily funded by the Minerals Management Service, U.S. Department of the Interior, through interagency agreement. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
The Moss-Back Alga (Cladophorophyceae, Chlorophyta) on Two Species of Freshwater Turtles in the Kimberleys
Telopea 12(2) 279–284 The moss-back alga (Cladophorophyceae, Chlorophyta) on two species of freshwater turtles in the Kimberleys Stephen Skinner1,2, Nancy FitzSimmons3 and Timothy J. Entwisle1 1National Herbarium of New South Wales, Mrs Macquaries Road, Sydney NSW 2000 Australia 2Southern ACT Catchment Group Inc., PO Box 2056, Kambah, ACT Author for correspondence: [email protected] 3Institute for Applied Ecology, School of Resource, Environmental & Heritage Sciences, University of Canberra, Canberra, ACT 2601, Australia Abstract The range of the Australian freshwater alga Basicladia ramulosa Ducker is extended, both in its turtle hosts (Chelodina burrungandjii Thomson et al.; Emydura australis (Grey)) and in geography, to tropical northern Western Australia. Along with further morphological observations, sporangia are described for the first time in this taxon. Introduction Moss-back turtles (Fig. 1) have fascinated biologists for many years. While the carapace of a potentially amphibious turtle would be a challenging habitat for most aquatic organisms, it is perhaps surprising there are only a handful of attached algae reported from such sites. Edgren et al. (1953) detailed the range of host turtles then known in North America and the range of epizoic algae that included Rhizoclonium and Cladophora. Two further genera in the Cladophoraceae are the only macroalgae widely reported on turtle carapaces: the prostrate, spreading, endozoic (and possibly disease causing) Dermatophyton radicans Peter, and species of the heterotrichous genus Basicladia, responsible for the name ‘moss-back’. In the United States, Basicladia is considered a small epizoic genus on turtles and water snails, of three to four taxa (John 2003). Hamilton (1948) described sexual reproduction in North American species of Basicladia involving the fusion of biflagellate zooids as is commonly the case in the Cladophoraceae. -
(7) Chrysophyta Golden-Brown Algae
PLANT GROUPS xanthophyta PLANT GROUPS (7) Chrysophyta Golden-brown Algae General characteristic of the Chrysophyta Habitat Aquatic mainly fresh water Pigments Chlorophyll (a & c), β-carotene & Fucoxanthin Food reserve Fat (Leucosin) Cell wall Cellulose, Hemicellulose often with siliceous scales Growth form Flagellate, Coccoid, Colonial rarely filamentous Flagella Two unequal in length & one of them has tripartite hairs Reproduction Asexual, Sexual Chrysophyta, or golden-brown algae, are common microscopic in fresh water. Some species are colorless, but the vast majority is photosynthetic. As such, they are particularly important in lakes, where they may be the primary source of food for zooplankton. They are not considered truly autotrophic by some biologists because nearly all chrysophyta become facultatively heterotrophic in the absence of adequate light, or in the presence of plentiful dissolved food. When this occurs, the chrysoplast atrophies and the alga may turn predator, feeding on bacteria or diatoms. 1 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Order Ochromonadales Family Ochromonadaceae Genus Ochromonas Ochromonas single-celled naked with two unequal flagella cells spherical cylindrical to pyriform. Cells with 1-2 (rarely more) chloroplasts, with or without an eyespot and/or Pyrenoid chloroplasts sometimes much reduced and pale or completely lost after abnormal division. 2 PLANT GROUPS xanthophyta Division Chrysophyta Class Chrysophyceae Family Synuraceae Genus Mallomonas Mallomonas Single-cell, flagellates, -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
Chemical Signaling in Diatom-Parasite Interactions
Friedrich-Schiller-Universität Jena Chemisch-Geowissenschaftliche Fakultät Max-Planck-Institut für chemische Ökologie Chemical signaling in diatom-parasite interactions Masterarbeit zur Erlangung des akademischen Grades Master of Science (M. Sc.) im Studiengang Chemische Biologie vorgelegt von Alina Hera geb. am 30.03.1993 in Kempten Erstgutachter: Prof. Dr. Georg Pohnert Zweitgutachter: Dr. rer. nat. Thomas Wichard Jena, 21. November 2019 Table of contents List of Abbreviations ................................................................................................................ III List of Figures .......................................................................................................................... IV List of Tables ............................................................................................................................. V 1. Introduction ............................................................................................................................ 1 2. Objectives of the Thesis ....................................................................................................... 11 3. Material and Methods ........................................................................................................... 12 3.1 Materials ......................................................................................................................... 12 3.2 Microbial strains and growth conditions ........................................................................ 12 3.3