How Do Cyanobacteria Glide? David G. Adams
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PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D
ERSITY IV N S Assam University Journal of Science & Technology : ISSN 0975-2773 U I L M C H A S A Biological and Environmental Sciences R S A Vol. 7 Number I 101-113, 2011 PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D. Sharma** Microbial Bioprospecting Laboratory Institute of Bioresources and Sustainable Development Takyelpat, Imphal-795001, Manipur, INDIA ** Department of Life science, Assam University, Silchar, Assam *Corresponding author email : [email protected] Abstract Cyanobacteria have an ancient history dating almost 3.5 billion years and diversified extensively to become one of the most successful and ecologically significant organisms on earth, with respect to longevity of lineage and impact on earth’s early environment. Despite the availability of various monograph based on morphological and ecological variants, the identification and classification of cyanobacteria remain a difficult and confusing task leading to uncertain identifications. Therefore, molecular approaches based on PCR techniques and DNA fingerprinting have been adopted for taxonomical studies. Molecular markers such as RAPD, RFLP and AFLP are used for the PCR techniques. Keywords: Non-heterocystous, cyanobacteria, molecular characterization. Introduction Cyanobacteria are an ancient group of prokaryotic aided by the presence of exopolysaccharides such microorganisms exhibiting the general as mucilage and / or a firm sheath. The presence characteristics of gram-negative bacteria. They or absence of a heterocyst is an important feature are unique among the prokaryotes in possessing separating genera. However, gas vacuoles, the capacity of oxygenic photosynthesis. structures that aid buoyancy, are found in species Cyanobacteria are a morphologically diverse group of many different genera. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Planktothrix Agardhii É a Mais Comum
Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters Catarina Isabel Prata Pereira Leitão Churro Doutoramento em Biologia Departamento Biologia 2015 Orientador Vitor Manuel de Oliveira e Vasconcelos, Professor Catedrático Faculdade de Ciências iv FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters The research presented in this thesis was supported by the Portuguese Foundation for Science and Technology (FCT, I.P.) national funds through the project PPCDT/AMB/67075/2006 and through the individual Ph.D. research grant SFRH/BD65706/2009 to Catarina Churro co-funded by the European Social Fund (Fundo Social Europeu, FSE), through Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional (POPH – QREN) and Foundation for Science and Technology (FCT). The research was performed in the host institutions: National Institute of Health Dr. Ricardo Jorge (INSA, I.P.), Lisboa; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto and Centre for Microbial Resources (CREM - FCT/UNL), Caparica that provided the laboratories, materials, regents, equipment’s and logistics to perform the experiments. v FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters vi FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters ACKNOWLEDGMENTS I would like to express my gratitude to my supervisor Professor Vitor Vasconcelos for accepting to embark in this research and supervising this project and without whom this work would not be possible. I am also greatly thankful to my co-supervisor Elisabete Valério for the encouragement in pursuing a graduate program and for accompanying me all the way through it. -
DOMAIN Bacteria PHYLUM Cyanobacteria
DOMAIN Bacteria PHYLUM Cyanobacteria D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub IV F Homoeotrichaceae Chamaesiphonaceae Ammatoideaceae Microchaetaceae Borzinemataceae Family I Family I Family I Chroococcaceae Borziaceae Nostocaceae Capsosiraceae Dermocarpellaceae Gomontiellaceae Rivulariaceae Chlorogloeopsaceae Entophysalidaceae Oscillatoriaceae Scytonemataceae Fischerellaceae Gloeobacteraceae Phormidiaceae Loriellaceae Hydrococcaceae Pseudanabaenaceae Mastigocladaceae Hyellaceae Schizotrichaceae Nostochopsaceae Merismopediaceae Stigonemataceae Microsystaceae Synechococcaceae Xenococcaceae S-F Homoeotrichoideae Note: Families shown in green color above have breakout charts G Cyanocomperia Dactylococcopsis Prochlorothrix Cyanospira Prochlorococcus Prochloron S Amphithrix Cyanocomperia africana Desmonema Ercegovicia Halomicronema Halospirulina Leptobasis Lichen Palaeopleurocapsa Phormidiochaete Physactis Key to Vertical Axis Planktotricoides D=Domain; P=Phylum; C=Class; O=Order; F=Family Polychlamydum S-F=Sub-Family; G=Genus; S=Species; S-S=Sub-Species Pulvinaria Schmidlea Sphaerocavum Taxa are from the Taxonomicon, using Systema Natura 2000 . Triochocoleus http://www.taxonomy.nl/Taxonomicon/TaxonTree.aspx?id=71022 S-S Desmonema wrangelii Palaeopleurocapsa wopfnerii Pulvinaria suecica Key Genera D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub -
Benthic Cyanobacteria (Oscillatoriaceae) That Produce Microcystin-LR, Isolated from Four Reservoirs in Southern California
ARTICLE IN PRESS WATER RESEARCH 41 (2007) 492– 498 Available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/watres Benthic cyanobacteria (Oscillatoriaceae) that produce microcystin-LR, isolated from four reservoirs in southern California George Izaguirrea,Ã, Anne-Dorothee Jungblutb, Brett A. Neilanb aWater Quality Laboratory, 700 Moreno Avenue, Metropolitan Water District of Southern California, La Verne, CA 91750, USA bSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, 2053 New South Wales, Australia article info ABSTRACT Article history: Cyanobacteria that produce the toxin microcystin have been isolated from many parts of Received 9 November 2005 the world. Most of these organisms are planktonic; however, we report on several Received in revised form microcystin-producing benthic filamentous cyanobacterial isolates from four drinking- 3 October 2006 water reservoirs in southern California (USA): Lake Mathews, Lake Skinner, Diamond Valley Accepted 4 October 2006 Lake (DVL), and Lake Perris. Some samples of benthic material from these reservoirs tested Available online 28 November 2006 positive for microcystin by an ELISA tube assay, and all the positive samples had in Keywords: common a green filamentous cyanobacterium 10–15 mm in diameter. Seventeen unialgal Cyanobacteria strains of the organism were isolated and tested positive by ELISA, and 11 cultures of these À1 Cyanotoxins strains were found to contain high concentrations of microcystin-LR (90–432 mgL ). The Lyngbya cultures were analyzed by protein phosphatase inhibition assay (PPIA) and HPLC with Microcystin photodiode array detector (PDA) or liquid chromatography/mass spectrometry (LC/MS). Phormidium Microcystin per unit carbon was determined for six cultures and ranged from 1.15 to 4.15 mgmgÀ1 C. -
Seeking the True Oscillatoria: a Quest for a Reliable Phylogenetic and Taxonomic Reference Point
Preslia 90: 151–169, 2018 151 Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point Hledání fylogenetického a taxonomického referenčního bodu pro rod Oscillatoria RadkaMühlsteinová1,2,TomášHauer1,2,PaulDe Ley3 &NicolePietrasiak4 1Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, Czech Republic, CZ-370 05, e-mail: [email protected]; 2The Czech Academy of Sciences, Institute of Botany, Centre for Phycology, Dukelská 135, CZ-379 82, Třeboň, Czech Republic, e-mail: [email protected]; 3Department of Nematology, University of California Riverside, Riverside, California 92521, USA, e-mail: [email protected]; 4Department of Plant and Environmental Science, New Mexico State University, Skeen Hall, Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA, e-mail: [email protected] Mühlsteinová R., Hauer T., De Ley P. & Pietrasiak N. (2018): Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point. – Preslia 90: 151–169. Reliable taxonomy of any group of organisms cannot be performed without phylogenetic refer- ence points. In the historical “morphological era”, a designated type specimen was considered fully sufficient but nowadays this principle can prove to be problematic and challenging espe- cially when studying microscopic organisms. However, within the last decades there has been tre- mendous advancement in microscopy imaging and molecular biology offering additional data to systematic studies in ways that are revolutionizing cyanobacterial taxonomy. Unfortunately, most of the existing herbarium specimens or even iconotypes of old established taxa often cannot be subjects of modern analytic methods. Such is the case for the widely known cyanobacterial genus Oscillatoria which was introduced by Vaucher in 1803. -
First Insights Into the Impacts of Benthic Cyanobacterial Mats on Fish
www.nature.com/scientificreports OPEN First insights into the impacts of benthic cyanobacterial mats on fsh herbivory functions on a nearshore coral reef Amanda K. Ford 1,2*, Petra M. Visser 3, Maria J. van Herk3, Evelien Jongepier 4 & Victor Bonito5 Benthic cyanobacterial mats (BCMs) are becoming increasingly common on coral reefs. In Fiji, blooms generally occur in nearshore areas during warm months but some are starting to prevail through cold months. Many fundamental knowledge gaps about BCM proliferation remain, including their composition and how they infuence reef processes. This study examined a seasonal BCM bloom occurring in a 17-year-old no-take inshore reef area in Fiji. Surveys quantifed the coverage of various BCM-types and estimated the biomass of key herbivorous fsh functional groups. Using remote video observations, we compared fsh herbivory (bite rates) on substrate covered primarily by BCMs (> 50%) to substrate lacking BCMs (< 10%) and looked for indications of fsh (opportunistically) consuming BCMs. Samples of diferent BCM-types were analysed by microscopy and next-generation amplicon sequencing (16S rRNA). In total, BCMs covered 51 ± 4% (mean ± s.e.m) of the benthos. Herbivorous fsh biomass was relatively high (212 ± 36 kg/ha) with good representation across functional groups. Bite rates were signifcantly reduced on BCM-dominated substratum, and no fsh were unambiguously observed consuming BCMs. Seven diferent BCM-types were identifed, with most containing a complex consortium of cyanobacteria. These results provide insight into BCM composition and impacts on inshore Pacifc reefs. Tough scarcely mentioned in the literature a decade ago, benthic cyanobacterial mats (BCMs) are receiving increasing attention from researchers and managers as being a nuisance on tropical coral reefs worldwide1–4. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
Structure, Morphogenesis of Calyptra and Nomenclatural Identity of Trichodesmium Erythraeum Ehr
Bangladesh J. Plant Taxon. 27(2): 273-282, 2020 (December) © 2020 Bangladesh Association of Plant Taxonomists STRUCTURE, MORPHOGENESIS OF CALYPTRA AND NOMENCLATURAL IDENTITY OF TRICHODESMIUM ERYTHRAEUM EHR. (CYANOBACTERIA) NEWLY RECORDED OFF THE SOUTH-WEST COAST OF BANGLADESH ABDUL AZIZ*AND MAHIN MOHID Department of Botany, University of Dhaka, Dhaka 1000, Bangladesh Keywords: Trichodesmium erythraeum Ehr., Microcoleaceae, Calyptra morphogenesis, Cyanobacteria, Bangladesh Abstract Trichodesmium erythraeum Ehrenberg 1830 (Cyanobacteria) has been described and newly recorded from three km off the west coast of the St. Martin’s Island (SMI), Cox’s Bazar, Bangladesh. The Red Sea algal bloom was narrowly elliptical raft-like loose aggregates 20-40 cm long, 4-8 cm wide and 2-3 cm thick. Volume of small and large Sea sawdust were 160×10-6 to 960×10-6 m3 consisting of 25-153 millions flat tuft or spindle- like colonies measured 830-1500 µm long and 155-260 µm wide with 13-16 filaments laterally in the median region. Sheath was present around each trichome even covering the tip cell wall the feature has so far not been reported for the Trichodesmium spp. Because of most likely sticky nature of the sheath 300-600 µm long filaments of 195-450 formed compact colonies without colonial sheath around. In interior filaments cells were rectangular 7-10 µm long and 6.3-10 µm wide with abundant gas vacuoles, bluish-green red, no diazocyte developed and without calyptra. Cells of peripheral filaments were without gas vacuoles, cytoplasm disorganized, appearing necrotic with glycogen granules, and produced convex to sickle-shaped four-layered calyptra consisting of outermost sheath followed by outer extra thick wall, tip cell wall and inner extra thick wall on the tip cell. -
Filamentous Cyanobacteria from Western Ghats of North Kerala, India
Bangladesh J. Plant Taxon. 28(1): 83‒95, 2021 (June) https://doi.org/10.3329/bjpt.v28i1.54210 © 2021 Bangladesh Association of Plant Taxonomists FILAMENTOUS CYANOBACTERIA FROM WESTERN GHATS OF NORTH KERALA, INDIA 1 V. GEETHU AND MAMIYIL SHAMINA Cyanobacterial Diversity Division, Department of Botany, University of Calicut, Kerala, India Keywords: Cyanobacteria, Filamentous, Peruvannamuzhi, Western Ghats. Abstract Cyanobacteria are Gram negative, photosynthetic and nitrogen fixing microorganisms which contribute much to our present-day life as medicines, foods, biofuels and biofertilizers. Western Ghats are the hotspots of biodiversity with rich combination of microbial flora including cyanobacteria. Though cosmopolitan in distribution, their abundance in tropical forests are not fully exploited. To fill up this knowledge gap, the present research was carried out on the cyanobacterial flora of Peruvannamuzhi forest and Janaki forests of Western Ghats in Kozhikode District, North Kerala State, India. Extensive specimen collections were conducted during South-West monsoon (June to September) and North-East monsoon (October to December) in the year 2019. The highest diversity of cyanobacteria was found on rock surfaces. A total of 18 cyanobacterial taxa were identified. Among them filamentous heterocystous forms showed maximum diversity with 10 species followed by non- heterocystous forms with 8 species. The highest number of cyanobacteria were identified from Peruvannamuzhi forest with 15 taxa followed by Janaki forest with 3 taxa. The non- heterocystous cyanobacterial genus Oscillatoria Voucher ex Gomont showed maximum abundance with 4 species. In this study we reported Planktothrix planktonica (Elenkin) Agagnostidis & Komárek 1988, Oscillatoria euboeica Anagnostidis 2001 and Nostoc interbryum Sant’Anna et al. 2007 as three new records from India. -
Breakthrough of Oscillatoria Limnetica and Microcystin Toxins Into Drinking Water Treatment Plants – Examples from the Nile River, Egypt
Breakthrough of Oscillatoria limnetica and microcystin toxins into drinking water treatment plants – examples from the Nile River, Egypt Zakaria A Mohamed1* 1Department of Botany and Microbiology, Faculty of Science, Sohag University, Sohag 82524, Egypt ABSTRACT The presence of cyanobacteria and their toxins (cyanotoxins) in processed drinking water may pose a health risk to humans and animals. The efficiency of conventional drinking water treatment processes (coagulation, flocculation, rapid sand filtration and disinfection) in removing cyanobacteria and cyanotoxins varies across different countries and depends on the composition of cyanobacteria and cyanotoxins prevailing in the water source. Most treatment studies have primarily been on the removal efficiency for unicellularMicrocystis spp., with little information about the removal efficiency for filamentous cyanobacteria. This study investigates the efficiency of conventional drinking water treatment processes for the removal of the filamentous cyanobacterium,Oscillatoria limnetica, dominating the source water (Nile River) phytoplankton in seven Egyptian drinking water treatment plants (DWTPs). The study was conducted in May 2013. The filamentous O. limnetica was present at high cell densities (660–1 877 cells/mL) and produced microcystin (MC) cyanotoxin concentrations of up to 877 µg∙g-1, as determined by enzyme-linked immunosorbent assay (ELISA). Results also showed that conventional treatment methods removed most phytoplankton cells, but were ineffective for complete removal ofO. limnetica. Furthermore, coagulation led to cell lysis and subsequent microcystin release. Microcystins were not effectively removed and remained at high concentrations (0.37–3.8 µg∙L -1) in final treated water, exceeding the WHO limit of 1 µg∙L-1. This study recommends regular monitoring and proper treatment optimization for removing cyanobacteria and their cyanotoxins in DWTPs using conventional methods. -
(Cyanobacterial Genera) 2014, Using a Polyphasic Approach
Preslia 86: 295–335, 2014 295 Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach Taxonomické hodnocení cyanoprokaryot (cyanobakteriální rody) v roce 2014 podle polyfázického přístupu Jiří K o m á r e k1,2,JanKaštovský2, Jan M a r e š1,2 & Jeffrey R. J o h a n s e n2,3 1Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ-37982 Třeboň, Czech Republic, e-mail: [email protected]; 2Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, CZ-370 05 České Budějovice, Czech Republic; 3Department of Biology, John Carroll University, University Heights, Cleveland, OH 44118, USA Komárek J., Kaštovský J., Mareš J. & Johansen J. R. (2014): Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach. – Preslia 86: 295–335. The whole classification of cyanobacteria (species, genera, families, orders) has undergone exten- sive restructuring and revision in recent years with the advent of phylogenetic analyses based on molecular sequence data. Several recent revisionary and monographic works initiated a revision and it is anticipated there will be further changes in the future. However, with the completion of the monographic series on the Cyanobacteria in Süsswasserflora von Mitteleuropa, and the recent flurry of taxonomic papers describing new genera, it seems expedient that a summary of the modern taxonomic system for cyanobacteria should be published. In this review, we present the status of all currently used families of cyanobacteria, review the results of molecular taxonomic studies, descriptions and characteristics of new orders and new families and the elevation of a few subfamilies to family level.