Structure, Morphogenesis of Calyptra and Nomenclatural Identity of Trichodesmium Erythraeum Ehr
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Rbcl Marker Based Approach for Molecular Identification of Arthrospira and Dunaliella Isolates from Non-Axenic Cultures
Journal of Genetics and Genetic Engineering Volume 2, Issue 2, 2018, PP 24-34 ISSN 2637-5370 Rbcl Marker Based Approach for Molecular Identification of Arthrospira and Dunaliella Isolates from Non-Axenic Cultures Akash Patel 1&2, Spandan Chaudhary3, Bakhtiyar Alam Syed2, Bharat Gami1, Pankaj Patel1, Beena Patel1* 1R & D Department, Abellon CleanEnergy Pvt. Ltd. Sydney House, Premchand Nagar Road, Ahmedabad-380054 INDIA 2Department of Biotechnology, Hemchandracharya North Gujarat University, Patan 384265, Gujarat, India. 3Xcelris Labs Limited 2nd Floor, Heritage Profile, 22-23, Shrimali Society, Opp. Navrangpura Police Station, Navrangpura, Ahmedabad - 380009, Gujarat, INDIA *Corresponding Author: Beena Patel,R & D Department, Abellon Clean Energy Pvt. Ltd. Sydney House, Premchand Nagar Road, Ahmedabad-380054 INDIA. [email protected] ABSTRACT Population escalation and energy crises have increased the urge to find renewable energy sources with higher sustainability index. Microalgae are potential candidates for biofuel feedstock production without utilizing fertile land and drinking water owing to their efficient oil production pathways and high value bio molecules. Morphological identification of potential microalgae species needs accurate molecular validation due to the versatility in nature, however PCR based molecular identification requires pure and axenic culture of isolates in universal primers based gene targets. In present study, monospecies algal culture were directly used to extract DNA followed by PCR amplification of 18S rDNA gene target using universal primers ITS1F-4R and rbcL gene target using primers designed for species specific gene. rbcL primers successfully amplified specific microalgae gene. Resulting sequences were annotated using multiple sequence alignment with Genebank databse and phylogenetic relationship study. These rbcL gene primers and validated PCR conditions can be used for non-axenic monospecies green microalgae isolates for easy and efficient molecular identification. -
Oscillatoriales, Microcoleaceae), Nuevo Reporte Para El Perú
Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Arnaldoa 24 (1): 369 - 382, 2017 ISSN: 1815-8242 (edición impresa) http://doi.org/10.22497/arnaldoa.241.24119 ISSN: 2413-3299 (edición online) Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Phenotypic diversity of the cyanobacterium Pseudo- phormidium tenue (Oscillatoriales, Microcoleaceae), new record for Peru Haydee Montoya T., José Gómez C., Mauro Mariano A., Enoc Jara P., Egma Mayta H., Mario Benavente P. Museo de Historia Natural, Departamento de Simbiosis Vegetal, UNMSM. Av. Arenales 1256. Apartado 14-0434. Lima 14, PERÚ. Instituto de Investigación de Ciencias Biológicas, Facultad de CC. Biológicas, UNMSM [email protected], [email protected], [email protected] [email protected] 24 (1): Enero - Junio, 2017 369 Este es un artículo de acceso abierto bajo la licencia CC BY-NC 4.0: https://creativecommons.org/licenses/by-nc/4.0/ Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Recibido: 20-I-2017; Aceptado: 15-III-2017; Publicado: VI-2017; Edición online: 05-VI-2017 Resumen Los ecosistemas desérticos costeros tropicales están distribuidos ampliamente en el oeste de Sudamérica. No obstante las tierras áridas de esta región, la disponibilidad hídrica de la humedad proveniente de las neblinas a nivel del océano Pacífico acarreadas hacia las colinas (lomas) y las garúas anuales invernales fluctuantes favorecen el desarrollo de comunidades cianobacteriales extremas. El área de evaluación fue las Lomas de Pachacámac, al sur de Lima, y las colecciones cianobacteriales estándar (costras, biofilms o matas terrestres) fueron realizadas irregularmente en 1995 y 2012. -
Causative Analysis on a Nearshore Bloom of Oscillatoria Erythraea (Trichodesmium) in the Northern Gulf of Mexico
Gulf of Mexico Science Volume 5 Number 1 Number 1 Article 1 10-1981 Causative Analysis on a Nearshore Bloom of Oscillatoria erythraea (trichodesmium) in the Northern Gulf of Mexico Lionel Eleuterius Gulf Coast Research Laboratory Harriet Perry Gulf Coast Research Laboratory Charles Eleuterius Gulf Coast Research Laboratory James Warren Gulf Coast Research Laboratory John Caldwell Gulf Coast Research Laboratory Follow this and additional works at: https://aquila.usm.edu/goms DOI: 10.18785/negs.0501.01 Recommended Citation Eleuterius, L., H. Perry, C. Eleuterius, J. Warren and J. Caldwell. 1981. Causative Analysis on a Nearshore Bloom of Oscillatoria erythraea (trichodesmium) in the Northern Gulf of Mexico. Northeast Gulf Science 5 (1). Retrieved from https://aquila.usm.edu/goms/vol5/iss1/1 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf of Mexico Science by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Eleuterius et al.: Causative Analysis on a Nearshore Bloom of Oscillatoria erythraea Northeast Gulf Science Vol5, No.1, p. 1-11 October 1981 CAUSATIVE ANALYSIS ON A NEARSHORE BLOOM OF Oscillator/a erythraea (TRICHODESMIUM) IN THE NORTHERN GULF OF MEXICO Lionel Eleuterius, Harriet Perry, Charles Eleuterius James Warren, and John Caldwell Gulf Coast Research Laboratory Ocean Springs, MS 39564 ABSTRACT: Physical, chemical, and biological characteristics which preceded and caused a bloom of Osclllatorla erythraea commonly known as trlchodesmlum In coastal waters of Mississippi and adjacent waters of the Gulf of Mexico are described. -
PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D
ERSITY IV N S Assam University Journal of Science & Technology : ISSN 0975-2773 U I L M C H A S A Biological and Environmental Sciences R S A Vol. 7 Number I 101-113, 2011 PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D. Sharma** Microbial Bioprospecting Laboratory Institute of Bioresources and Sustainable Development Takyelpat, Imphal-795001, Manipur, INDIA ** Department of Life science, Assam University, Silchar, Assam *Corresponding author email : [email protected] Abstract Cyanobacteria have an ancient history dating almost 3.5 billion years and diversified extensively to become one of the most successful and ecologically significant organisms on earth, with respect to longevity of lineage and impact on earth’s early environment. Despite the availability of various monograph based on morphological and ecological variants, the identification and classification of cyanobacteria remain a difficult and confusing task leading to uncertain identifications. Therefore, molecular approaches based on PCR techniques and DNA fingerprinting have been adopted for taxonomical studies. Molecular markers such as RAPD, RFLP and AFLP are used for the PCR techniques. Keywords: Non-heterocystous, cyanobacteria, molecular characterization. Introduction Cyanobacteria are an ancient group of prokaryotic aided by the presence of exopolysaccharides such microorganisms exhibiting the general as mucilage and / or a firm sheath. The presence characteristics of gram-negative bacteria. They or absence of a heterocyst is an important feature are unique among the prokaryotes in possessing separating genera. However, gas vacuoles, the capacity of oxygenic photosynthesis. structures that aid buoyancy, are found in species Cyanobacteria are a morphologically diverse group of many different genera. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
Detection and Study of Blooms of Trichodesmium Erythraeum and Noctiluca Miliaris in NE Arabian Sea S
Detection and study of blooms of Trichodesmium erythraeum and Noctiluca miliaris in NE Arabian Sea S. G. Prabhu Matondkar 1*, R.M. Dwivedi 2, J. I. Goes 3, H.do.R. Gomes 3, S.G. Parab 1and S.M.Pednekar 1 1National Institute of Oceanography, Dona-Paula 403 004, Goa, INDIA 2Space Application Centre, Ahmedabad, Gujarat, INDIA 3Bigelow Laboratory for Ocean Sciences, West Boothbay Harbor, Maine, 04575, USA Abstract The Arabian Sea is subject to semi-annual wind reversals associated with the monsoon cycle that result in two periods of elevated phytoplankton productivity, one during the northeast (NE) monsoon (November-February) and the other during the southwest (SW) monsoon (June- September). Although the seasonality of phytoplankton biomass in these offshore waters is well known, the abundance and composition of phytoplankton associated with this distinct seasonal cycle is poorly understood. Monthly samples were collected from the NE Arabian Sea (offshore) from November to May. Phytoplankton were studied microscopically up to the species level. Phytoplankton counts are supported by Chl a estimations and chemotaxonomic studies using HPLC. Surface phytoplankton cell counts varied from 0.1912 (Mar) to 15.83 cell x104L-1 (Nov). In Nov Trichodesmium thiebautii was the dominant species. It was replaced by diatom and dinoflagellates in the following month. Increased cell counts during Jan were predominantly due to dinoflagellates Gymnodinium breve , Gonyaulax schilleri and Amphidinium carteare . Large blooms of Noctiluca miliaris were observed in Feb a direct consequence of the large populations of G. schilleri upon which N. miliaris is known to graze. In Mar and April, N. miliaris was replaced by blooms of Trichodesmium erythraeum . -
Bloom of Trichodesmium Erythraeum (Ehr.) and Its Impact on Water Quality and Plankton Community Structure in the Coastal Waters of Southeast Coast of India
Indian Journal of Marine Science Vol. 39(3), September 2010, pp. 323-333 Bloom of Trichodesmium erythraeum (Ehr.) and its impact on water quality and plankton community structure in the coastal waters of southeast coast of India A K Mohanty 1, K K Satpathy 1, G Sahu 1, K J Hussain 1, M V R Prasad 1 & S K Sarkar 2 1 Indira Gandhi Centre for Atomic Research, Kalpakkam, Tamil Nadu- 603 102 India 2 Department of Marine Science, University of Calcutta, Kolkata- 700 019 India [Email : [email protected]] Received 14 September 2009; revised 11 January 2010 An intense bloom of Trichodesmium erythraeum was observed in the coastal waters (about 600 m away from the shore) of southeast coast of India during the post-northeast monsoon period. The bloom appeared during a relatively high temperature condition with coastal water salinity > 31 psu. A significant reduction in nitrate concentration was noticed during the bloom period, whereas, relatively high concentration of phosphate and total phosphorous was observed. An abrupt increase in ammonia concentration to the tune of 284.36 µmol l -1 was observed which coincided with the highest Trichodesmium density (2.88 × 10 7 cells l -1). Contribution of Trichodesmium to the total phytoplankton density ranged from 7.79% to 97.01%. A distinct variation in phytoplankton species number and phytoplankton diversity indices was noticed. The lowest diversity indices coincided with the observed highest Trichodesmium density. Concentrations of chlorophyll-a (maximum 42.15 mg m -3) and phaeophytin (maximum 46.23 mg m -3) increased abnormally during the bloom. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
UNIVERSITY of CALIFORNIA, SAN DIEGO Indicators of Iron
UNIVERSITY OF CALIFORNIA, SAN DIEGO Indicators of Iron Metabolism in Marine Microbial Genomes and Ecosystems A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Oceanography by Shane Lahman Hogle Committee in charge: Katherine Barbeau, Chair Eric Allen Bianca Brahamsha Christopher Dupont Brian Palenik Kit Pogliano 2016 Copyright Shane Lahman Hogle, 2016 All rights reserved . The Dissertation of Shane Lahman Hogle is approved, and it is acceptable in quality and form for publication on microfilm and electronically: Chair University of California, San Diego 2016 iii DEDICATION Mom, Dad, Joel, and Marie thank you for everything iv TABLE OF CONTENTS Signature Page ................................................................................................................... iii Dedication .......................................................................................................................... iv Table of Contents .................................................................................................................v List of Figures ................................................................................................................... vii List of Tables ..................................................................................................................... ix Acknowledgements ..............................................................................................................x Vita .................................................................................................................................. -
Planktothrix Agardhii É a Mais Comum
Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters Catarina Isabel Prata Pereira Leitão Churro Doutoramento em Biologia Departamento Biologia 2015 Orientador Vitor Manuel de Oliveira e Vasconcelos, Professor Catedrático Faculdade de Ciências iv FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters The research presented in this thesis was supported by the Portuguese Foundation for Science and Technology (FCT, I.P.) national funds through the project PPCDT/AMB/67075/2006 and through the individual Ph.D. research grant SFRH/BD65706/2009 to Catarina Churro co-funded by the European Social Fund (Fundo Social Europeu, FSE), through Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional (POPH – QREN) and Foundation for Science and Technology (FCT). The research was performed in the host institutions: National Institute of Health Dr. Ricardo Jorge (INSA, I.P.), Lisboa; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto and Centre for Microbial Resources (CREM - FCT/UNL), Caparica that provided the laboratories, materials, regents, equipment’s and logistics to perform the experiments. v FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters vi FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters ACKNOWLEDGMENTS I would like to express my gratitude to my supervisor Professor Vitor Vasconcelos for accepting to embark in this research and supervising this project and without whom this work would not be possible. I am also greatly thankful to my co-supervisor Elisabete Valério for the encouragement in pursuing a graduate program and for accompanying me all the way through it. -
Seeking the True Oscillatoria: a Quest for a Reliable Phylogenetic and Taxonomic Reference Point
Preslia 90: 151–169, 2018 151 Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point Hledání fylogenetického a taxonomického referenčního bodu pro rod Oscillatoria RadkaMühlsteinová1,2,TomášHauer1,2,PaulDe Ley3 &NicolePietrasiak4 1Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, Czech Republic, CZ-370 05, e-mail: [email protected]; 2The Czech Academy of Sciences, Institute of Botany, Centre for Phycology, Dukelská 135, CZ-379 82, Třeboň, Czech Republic, e-mail: [email protected]; 3Department of Nematology, University of California Riverside, Riverside, California 92521, USA, e-mail: [email protected]; 4Department of Plant and Environmental Science, New Mexico State University, Skeen Hall, Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA, e-mail: [email protected] Mühlsteinová R., Hauer T., De Ley P. & Pietrasiak N. (2018): Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point. – Preslia 90: 151–169. Reliable taxonomy of any group of organisms cannot be performed without phylogenetic refer- ence points. In the historical “morphological era”, a designated type specimen was considered fully sufficient but nowadays this principle can prove to be problematic and challenging espe- cially when studying microscopic organisms. However, within the last decades there has been tre- mendous advancement in microscopy imaging and molecular biology offering additional data to systematic studies in ways that are revolutionizing cyanobacterial taxonomy. Unfortunately, most of the existing herbarium specimens or even iconotypes of old established taxa often cannot be subjects of modern analytic methods. Such is the case for the widely known cyanobacterial genus Oscillatoria which was introduced by Vaucher in 1803. -
First Insights Into the Impacts of Benthic Cyanobacterial Mats on Fish
www.nature.com/scientificreports OPEN First insights into the impacts of benthic cyanobacterial mats on fsh herbivory functions on a nearshore coral reef Amanda K. Ford 1,2*, Petra M. Visser 3, Maria J. van Herk3, Evelien Jongepier 4 & Victor Bonito5 Benthic cyanobacterial mats (BCMs) are becoming increasingly common on coral reefs. In Fiji, blooms generally occur in nearshore areas during warm months but some are starting to prevail through cold months. Many fundamental knowledge gaps about BCM proliferation remain, including their composition and how they infuence reef processes. This study examined a seasonal BCM bloom occurring in a 17-year-old no-take inshore reef area in Fiji. Surveys quantifed the coverage of various BCM-types and estimated the biomass of key herbivorous fsh functional groups. Using remote video observations, we compared fsh herbivory (bite rates) on substrate covered primarily by BCMs (> 50%) to substrate lacking BCMs (< 10%) and looked for indications of fsh (opportunistically) consuming BCMs. Samples of diferent BCM-types were analysed by microscopy and next-generation amplicon sequencing (16S rRNA). In total, BCMs covered 51 ± 4% (mean ± s.e.m) of the benthos. Herbivorous fsh biomass was relatively high (212 ± 36 kg/ha) with good representation across functional groups. Bite rates were signifcantly reduced on BCM-dominated substratum, and no fsh were unambiguously observed consuming BCMs. Seven diferent BCM-types were identifed, with most containing a complex consortium of cyanobacteria. These results provide insight into BCM composition and impacts on inshore Pacifc reefs. Tough scarcely mentioned in the literature a decade ago, benthic cyanobacterial mats (BCMs) are receiving increasing attention from researchers and managers as being a nuisance on tropical coral reefs worldwide1–4.