Detailed Characterization of the Arthrospira Type Species Separating
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Rbcl Marker Based Approach for Molecular Identification of Arthrospira and Dunaliella Isolates from Non-Axenic Cultures
Journal of Genetics and Genetic Engineering Volume 2, Issue 2, 2018, PP 24-34 ISSN 2637-5370 Rbcl Marker Based Approach for Molecular Identification of Arthrospira and Dunaliella Isolates from Non-Axenic Cultures Akash Patel 1&2, Spandan Chaudhary3, Bakhtiyar Alam Syed2, Bharat Gami1, Pankaj Patel1, Beena Patel1* 1R & D Department, Abellon CleanEnergy Pvt. Ltd. Sydney House, Premchand Nagar Road, Ahmedabad-380054 INDIA 2Department of Biotechnology, Hemchandracharya North Gujarat University, Patan 384265, Gujarat, India. 3Xcelris Labs Limited 2nd Floor, Heritage Profile, 22-23, Shrimali Society, Opp. Navrangpura Police Station, Navrangpura, Ahmedabad - 380009, Gujarat, INDIA *Corresponding Author: Beena Patel,R & D Department, Abellon Clean Energy Pvt. Ltd. Sydney House, Premchand Nagar Road, Ahmedabad-380054 INDIA. [email protected] ABSTRACT Population escalation and energy crises have increased the urge to find renewable energy sources with higher sustainability index. Microalgae are potential candidates for biofuel feedstock production without utilizing fertile land and drinking water owing to their efficient oil production pathways and high value bio molecules. Morphological identification of potential microalgae species needs accurate molecular validation due to the versatility in nature, however PCR based molecular identification requires pure and axenic culture of isolates in universal primers based gene targets. In present study, monospecies algal culture were directly used to extract DNA followed by PCR amplification of 18S rDNA gene target using universal primers ITS1F-4R and rbcL gene target using primers designed for species specific gene. rbcL primers successfully amplified specific microalgae gene. Resulting sequences were annotated using multiple sequence alignment with Genebank databse and phylogenetic relationship study. These rbcL gene primers and validated PCR conditions can be used for non-axenic monospecies green microalgae isolates for easy and efficient molecular identification. -
Oscillatoriales, Microcoleaceae), Nuevo Reporte Para El Perú
Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Arnaldoa 24 (1): 369 - 382, 2017 ISSN: 1815-8242 (edición impresa) http://doi.org/10.22497/arnaldoa.241.24119 ISSN: 2413-3299 (edición online) Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Phenotypic diversity of the cyanobacterium Pseudo- phormidium tenue (Oscillatoriales, Microcoleaceae), new record for Peru Haydee Montoya T., José Gómez C., Mauro Mariano A., Enoc Jara P., Egma Mayta H., Mario Benavente P. Museo de Historia Natural, Departamento de Simbiosis Vegetal, UNMSM. Av. Arenales 1256. Apartado 14-0434. Lima 14, PERÚ. Instituto de Investigación de Ciencias Biológicas, Facultad de CC. Biológicas, UNMSM [email protected], [email protected], [email protected] [email protected] 24 (1): Enero - Junio, 2017 369 Este es un artículo de acceso abierto bajo la licencia CC BY-NC 4.0: https://creativecommons.org/licenses/by-nc/4.0/ Montoya et al.: Diversidad fenotípica de la cianobacteria Pseudophormidium tenue (Oscillatoriales, Microcoleaceae), nuevo reporte para el Perú Recibido: 20-I-2017; Aceptado: 15-III-2017; Publicado: VI-2017; Edición online: 05-VI-2017 Resumen Los ecosistemas desérticos costeros tropicales están distribuidos ampliamente en el oeste de Sudamérica. No obstante las tierras áridas de esta región, la disponibilidad hídrica de la humedad proveniente de las neblinas a nivel del océano Pacífico acarreadas hacia las colinas (lomas) y las garúas anuales invernales fluctuantes favorecen el desarrollo de comunidades cianobacteriales extremas. El área de evaluación fue las Lomas de Pachacámac, al sur de Lima, y las colecciones cianobacteriales estándar (costras, biofilms o matas terrestres) fueron realizadas irregularmente en 1995 y 2012. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Planktothrix Agardhii É a Mais Comum
Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters Catarina Isabel Prata Pereira Leitão Churro Doutoramento em Biologia Departamento Biologia 2015 Orientador Vitor Manuel de Oliveira e Vasconcelos, Professor Catedrático Faculdade de Ciências iv FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters The research presented in this thesis was supported by the Portuguese Foundation for Science and Technology (FCT, I.P.) national funds through the project PPCDT/AMB/67075/2006 and through the individual Ph.D. research grant SFRH/BD65706/2009 to Catarina Churro co-funded by the European Social Fund (Fundo Social Europeu, FSE), through Programa Operacional Potencial Humano – Quadro de Referência Estratégico Nacional (POPH – QREN) and Foundation for Science and Technology (FCT). The research was performed in the host institutions: National Institute of Health Dr. Ricardo Jorge (INSA, I.P.), Lisboa; Interdisciplinary Centre of Marine and Environmental Research (CIIMAR), Porto and Centre for Microbial Resources (CREM - FCT/UNL), Caparica that provided the laboratories, materials, regents, equipment’s and logistics to perform the experiments. v FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters vi FCUP Accessing Planktothrix species diversity and associated toxins using quantitative real-time PCR in natural waters ACKNOWLEDGMENTS I would like to express my gratitude to my supervisor Professor Vitor Vasconcelos for accepting to embark in this research and supervising this project and without whom this work would not be possible. I am also greatly thankful to my co-supervisor Elisabete Valério for the encouragement in pursuing a graduate program and for accompanying me all the way through it. -
Microcoleus Pseudautumnalis Sp. Nov. (Cyanobacteria, Oscillatoriales) Producing 2-Methylisoborneol
Bull. Natl. Mus. Nat. Sci., Ser. B, 45(3), pp. 93–101, August 22, 2019 Microcoleus pseudautumnalis sp. nov. (Cyanobacteria, Oscillatoriales) producing 2-methylisoborneol Yuko Niiyama* and Akihiro Tuji Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki 305–0005, Japan * E-mail: [email protected] (Received 13 May 2019; accepted 26 June 2019) Abstract A new species, Microcoleus pseudautumnalis, producing both 2-methylisoborneol (2-MIB) and geosmin is described. We have conducted a systematic study of a bad-smelling, 2-MIB producing planktic Pseudanabaena species in Japan and described four new species (P. foetida, P. subfoetida, P. cinerea, and P. yagii). In the course of this study, we found another kind of filamentous cyanobacteria with a bad smell in a plankton sample collected from a pond in Japan. The morphology of M. pseudautumnalis resembles that of M. autumnalis (Trevisan ex Gomont) Strunecký, Komárek et Johansen (basionym: Phormidium autumnale Trevisan ex Gomont). The sheath is thin and always contains only one trichome. Trichomes are immotile, gray- ish-green, not constricted at the cross-walls, not attenuated or attenuated towards the ends with truncated or capitated apical cells, and sometimes with calyptrae that are relatively wider (6.9– 7.6 μm) than those of M. autumnalis. The phylogeny of the 16S rRNA gene of M. pseudautumnalis revealed that it is in the clade of the genus Microcoleus and contains an 11-bp insert. Microcoleus autumnalis s. str. is said to lack this insert. Microcoleus pseudautumnalis has four kinds of 2-MIB genes, and the phylogeny of this taxon is different from those of Pseudanabaena sp. -
Seeking the True Oscillatoria: a Quest for a Reliable Phylogenetic and Taxonomic Reference Point
Preslia 90: 151–169, 2018 151 Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point Hledání fylogenetického a taxonomického referenčního bodu pro rod Oscillatoria RadkaMühlsteinová1,2,TomášHauer1,2,PaulDe Ley3 &NicolePietrasiak4 1Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, Czech Republic, CZ-370 05, e-mail: [email protected]; 2The Czech Academy of Sciences, Institute of Botany, Centre for Phycology, Dukelská 135, CZ-379 82, Třeboň, Czech Republic, e-mail: [email protected]; 3Department of Nematology, University of California Riverside, Riverside, California 92521, USA, e-mail: [email protected]; 4Department of Plant and Environmental Science, New Mexico State University, Skeen Hall, Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA, e-mail: [email protected] Mühlsteinová R., Hauer T., De Ley P. & Pietrasiak N. (2018): Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point. – Preslia 90: 151–169. Reliable taxonomy of any group of organisms cannot be performed without phylogenetic refer- ence points. In the historical “morphological era”, a designated type specimen was considered fully sufficient but nowadays this principle can prove to be problematic and challenging espe- cially when studying microscopic organisms. However, within the last decades there has been tre- mendous advancement in microscopy imaging and molecular biology offering additional data to systematic studies in ways that are revolutionizing cyanobacterial taxonomy. Unfortunately, most of the existing herbarium specimens or even iconotypes of old established taxa often cannot be subjects of modern analytic methods. Such is the case for the widely known cyanobacterial genus Oscillatoria which was introduced by Vaucher in 1803. -
First Insights Into the Impacts of Benthic Cyanobacterial Mats on Fish
www.nature.com/scientificreports OPEN First insights into the impacts of benthic cyanobacterial mats on fsh herbivory functions on a nearshore coral reef Amanda K. Ford 1,2*, Petra M. Visser 3, Maria J. van Herk3, Evelien Jongepier 4 & Victor Bonito5 Benthic cyanobacterial mats (BCMs) are becoming increasingly common on coral reefs. In Fiji, blooms generally occur in nearshore areas during warm months but some are starting to prevail through cold months. Many fundamental knowledge gaps about BCM proliferation remain, including their composition and how they infuence reef processes. This study examined a seasonal BCM bloom occurring in a 17-year-old no-take inshore reef area in Fiji. Surveys quantifed the coverage of various BCM-types and estimated the biomass of key herbivorous fsh functional groups. Using remote video observations, we compared fsh herbivory (bite rates) on substrate covered primarily by BCMs (> 50%) to substrate lacking BCMs (< 10%) and looked for indications of fsh (opportunistically) consuming BCMs. Samples of diferent BCM-types were analysed by microscopy and next-generation amplicon sequencing (16S rRNA). In total, BCMs covered 51 ± 4% (mean ± s.e.m) of the benthos. Herbivorous fsh biomass was relatively high (212 ± 36 kg/ha) with good representation across functional groups. Bite rates were signifcantly reduced on BCM-dominated substratum, and no fsh were unambiguously observed consuming BCMs. Seven diferent BCM-types were identifed, with most containing a complex consortium of cyanobacteria. These results provide insight into BCM composition and impacts on inshore Pacifc reefs. Tough scarcely mentioned in the literature a decade ago, benthic cyanobacterial mats (BCMs) are receiving increasing attention from researchers and managers as being a nuisance on tropical coral reefs worldwide1–4. -
Local Hopping Mobile DNA Implicated in Pseudogene Formation And
Vigil-Stenman et al. BMC Genomics (2015) 16:193 DOI 10.1186/s12864-015-1386-7 RESEARCH ARTICLE Open Access Local hopping mobile DNA implicated in pseudogene formation and reductive evolution in an obligate cyanobacteria-plant symbiosis Theoden Vigil-Stenman1*, John Larsson2, Johan A A Nylander3 and Birgitta Bergman1 Abstract Background: Insertion sequences (ISs) are approximately 1 kbp long “jumping” genes found in prokaryotes. ISs encode the protein Transposase, which facilitates the excision and reinsertion of ISs in genomes, making these sequences a type of class I (“cut-and-paste”) Mobile Genetic Elements. ISs are proposed to be involved in the reductive evolution of symbiotic prokaryotes. Our previous sequencing of the genome of the cyanobacterium ‘Nostoc azollae’ 0708, living in a tight perpetual symbiotic association with a plant (the water fern Azolla), revealed the presence of an eroding genome, with a high number of insertion sequences (ISs) together with an unprecedented large proportion of pseudogenes. To investigate the role of ISs in the reductive evolution of ‘Nostoc azollae’ 0708, and potentially in the formation of pseudogenes, a bioinformatic investigation of the IS identities and positions in 47 cyanobacterial genomes was conducted. To widen the scope, the IS contents were analysed qualitatively and quantitatively in 20 other genomes representing both free-living and symbiotic bacteria. Results: Insertion Sequences were not randomly distributed in the bacterial genomes and were found to transpose short distances from their original location (“local hopping”) and pseudogenes were enriched in the vicinity of IS elements. In general, symbiotic organisms showed higher densities of IS elements and pseudogenes than non-symbiotic bacteria. -
Microcystin Incidence in the Drinking Water of Mozambique: Challenges for Public Health Protection
toxins Review Microcystin Incidence in the Drinking Water of Mozambique: Challenges for Public Health Protection Isidro José Tamele 1,2,3 and Vitor Vasconcelos 1,4,* 1 CIIMAR/CIMAR—Interdisciplinary Center of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto, Avenida General Norton de Matos, 4450-238 Matosinhos, Portugal; [email protected] 2 Institute of Biomedical Science Abel Salazar, University of Porto, R. Jorge de Viterbo Ferreira 228, 4050-313 Porto, Portugal 3 Department of Chemistry, Faculty of Sciences, Eduardo Mondlane University, Av. Julius Nyerere, n 3453, Campus Principal, Maputo 257, Mozambique 4 Faculty of Science, University of Porto, Rua do Campo Alegre, 4069-007 Porto, Portugal * Correspondence: [email protected]; Tel.: +351-223-401-817; Fax: +351-223-390-608 Received: 6 May 2020; Accepted: 31 May 2020; Published: 2 June 2020 Abstract: Microcystins (MCs) are cyanotoxins produced mainly by freshwater cyanobacteria, which constitute a threat to public health due to their negative effects on humans, such as gastroenteritis and related diseases, including death. In Mozambique, where only 50% of the people have access to safe drinking water, this hepatotoxin is not monitored, and consequently, the population may be exposed to MCs. The few studies done in Maputo and Gaza provinces indicated the occurrence of MC-LR, -YR, and -RR at a concentration ranging from 6.83 to 7.78 µg L 1, which are very high, around 7 times · − above than the maximum limit (1 µg L 1) recommended by WHO. The potential MCs-producing in · − the studied sites are mainly Microcystis species. -
Spirulina Platensis an “Ultimate Food”: a Review
© 2019 IJRAR March 2019, Volume 6, Issue 1 www.ijrar.org (E-ISSN 2348-1269, P- ISSN 2349-5138) Spirulina Platensis an “Ultimate Food”: A Review 1Akshita Sharma, 2 Kamalpreet Kaur, 3 Manjri, 4 Deepti Marwaha 1,4Assistant Professor, 2,3Research Scholar 1Department of Biotechnology, 1Guru Nanak Girls College, Model town, Ludhiana, India. Introduction: Spirulina platensis is non toxic blue green algae which is filamentous cyanobacteria taken by the human as dietary supplement and use it as a food. Spirulina platensis is a biomass which is dried form of Arthrospira platensis .This blue green algae is the primary diet in humans, animals and aquatic life. Spirulina platensis is easily digested due to absence of cell wall .This blue green algae is an important diet in humans and in animals. In humans it is used as a source of protein and vitamin without causes any harmful effect. It is rich in phenolic acids, tocopherol and y-linolenic acids [1]. Spirulina platensis is most commonly available and widely used genus which has been extensively studied in different fields specially food and medicine [2]. Spirulina platensis was originally discovered in ponds and lakes. Spirulina platensis has been proven to boost the immune system, bolster the energy and reduce the risk of many cancers and infection. The nutritional quantity of the Blue-green algae Spirulina platensis has been evaluated on the basis of its chemical and amino acid composition and feeding trails with rats [3]. Due to high content of highly valuable proteins, indispensable amino acids, vitamins, beta carotene and other pigments, mineral substances, indispensable fatty acids and polysaccharides, Spirulina platensis has been found suitable for use as bioactive additives [4]. -
Production, Purification, and Study of the Amino Acid Composition of Microalgae Proteins
molecules Article Production, Purification, and Study of the Amino Acid Composition of Microalgae Proteins Anna Andreeva 1, Ekaterina Budenkova 1, Olga Babich 1 , Stanislav Sukhikh 1,2, Elena Ulrikh 3, Svetlana Ivanova 4,5,* , Alexander Prosekov 6 and Vyacheslav Dolganyuk 1,2 1 Institute of Living Systems, Immanuel Kant Baltic Federal University, 236016 Kaliningrad, Russia; [email protected] (A.A.); [email protected] (E.B.); [email protected] (O.B.); [email protected] (S.S.); [email protected] (V.D.) 2 Department of Bionanotechnology, Kemerovo State University, 650043 Kemerovo, Russia 3 Kuzbass State Agricultural Academy, 650056 Kemerovo, Russia; [email protected] 4 Natural Nutraceutical Biotesting Laboratory, Kemerovo State University, 650043 Kemerovo, Russia 5 Department of General Mathematics and Informatics, Kemerovo State University, 650043 Kemerovo, Russia 6 Laboratory of Biocatalysis, Kemerovo State University, 650043 Kemerovo, Russia; [email protected] * Correspondence: [email protected]; Tel.: +7-384-239-6832 Abstract: Microalgae are known to be rich in protein. In this study, we aim to investigate methods of producing and purifying proteins of 98 microalgae including Chlorella vulgaris, Arthrospira platensis, Nostoc sp., Dunaliella salina, and Pleurochrysis carterae (Baltic Sea). Therefore, we studied their amino acid composition and developed a two-stage protein concentrate purification method from the microalgae biomass. After an additional stage of purification, the mass fraction of protein substances with a molecular weight greater than 50 kDa in the protein concentrate isolated from the biomass of the microalga Dunaliella salina increased by 2.58 times as compared with the mass fraction before Citation: Andreeva, A.; Budenkova, filtration.