Marine Recreational Information Program (Mrip) Coding Manual
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
East Coast of North America Groundfish: Initial Explorations of Biogeography and Species Assemblages
East Coast of North America Strategic Assessment Project Partitioning the Total Mortality DFO r~I'j~ffm~niii~rlieqUe 10020258 of Atlantic Cod Stocks Project East Coast of North America Groundfish: Initial Explorations of Biogeography and Species Assemblages o Department of Fisheries and Oceans, Canada and National Oceanic and Atmospheric Administration, USA SH 213.5 August 1996 .E17 1996 c.2 About the East Coast of North America Strategic Assessment Project The East Coast of North America Strategic Assessment Project (ECNASAP) was initiated in the USA by NOAA's Strategic Environmental Assessments (SEA) Division to develop information and analytical resources for sup porting integrated management of large portions of the region's coastal ocean. The ECNASAP Pilot Project consists of inshore and offshore case studies, and is a cooperative effort among several U.S. and Canadian agencies. Digital map and data products are being developed in the Offshore Case Study for groundfish, seabirds, temperature, salinity, and sediments. This report summarizes the initial results for the groundfish component. About Partitioning the Total Mortality of Atlantic Cod Stocks Project In 1995, Canada's Department of Fisheries and Oceans (DFO) initiated a series of research projects to address high priority issues for the Atlantic and Pacific coasts. The Cod Mortality Project is a component of this effort; its objective is to assess the main causes for the decline of cod resources since the mid-1980s. A subproject is to examine long-term changes in groundfish assemblages on a biogeographic scale, and to determine whether or not these changes coincided with changes in ocean climate. -
Variation in Marine Threespine Stickleback (Gasterosteus Aculeatus) and Its Implications for Adaptive Divergence
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2017 Contemporary ancestor? Variation in marine threespine stickleback (Gasterosteus aculeatus) and its implications for adaptive divergence Morris, Matthew Morris, M. (2017). Contemporary ancestor? Variation in marine threespine stickleback (Gasterosteus aculeatus) and its implications for adaptive divergence (Unpublished doctoral thesis). University of Calgary, Calgary, AB. doi:10.11575/PRISM/25434 http://hdl.handle.net/11023/3910 doctoral thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Contemporary ancestor? Variation in marine threespine stickleback (Gasterosteus aculeatus) and its implications for adaptive divergence by Matthew Richard John Morris A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY GRADUATE PROGRAM IN BIOLOGICAL SCIENCES CALGARY, ALBERTA JUNE, 2017 © Matthew Richard John Morris 2017 Abstract Standing genetic variation (SGV) can affect the incidence and pace of adaptation and parallel evolution. The role of SGV versus de novo mutation can be tested in ancestral-derived comparisons when the “contemporary ancestor” is extant. Assumptions about SGV in these contemporary ancestors require formal testing. The threespine stickleback is an icon of adaptive divergence, with multiple freshwater forms having evolved in parallel from a presumably panmictic, evolutionarily static marine population – in part from SGV at Ectodysplasin. -
Dedication Donald Perrin De Sylva
Dedication The Proceedings of the First International Symposium on Mangroves as Fish Habitat are dedicated to the memory of University of Miami Professors Samuel C. Snedaker and Donald Perrin de Sylva. Samuel C. Snedaker Donald Perrin de Sylva (1938–2005) (1929–2004) Professor Samuel Curry Snedaker Our longtime collaborator and dear passed away on March 21, 2005 in friend, University of Miami Professor Yakima, Washington, after an eminent Donald P. de Sylva, passed away in career on the faculty of the University Brooksville, Florida on January 28, of Florida and the University of Miami. 2004. Over the course of his diverse A world authority on mangrove eco- and productive career, he worked systems, he authored numerous books closely with mangrove expert and and publications on topics as diverse colleague Professor Samuel Snedaker as tropical ecology, global climate on relationships between mangrove change, and wetlands and fish communities. Don pollutants made major scientific contributions in marine to this area of research close to home organisms in south and sedi- Florida ments. One and as far of his most afield as enduring Southeast contributions Asia. He to marine sci- was the ences was the world’s publication leading authority on one of the most in 1974 of ecologically important inhabitants of “The ecology coastal mangrove habitats—the great of mangroves” (coauthored with Ariel barracuda. His 1963 book Systematics Lugo), a paper that set the high stan- and Life History of the Great Barracuda dard by which contemporary mangrove continues to be an essential reference ecology continues to be measured. for those interested in the taxonomy, Sam’s studies laid the scientific bases biology, and ecology of this species. -
Fao/Government Cooperative Programme Scientific Basis
FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) Lesser Antilles Pelagic Ecosystem Project (GCP/RLA/140/JPN) Bridgetown, Barbados FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 This technical report is one of a series of reports prepared during the course of the project identified on the title page. The conclusions and recommendations given in the report are those considered appropriate at the time of its preparation. They may be modified in the light of further knowledge gained at subsequent stages of the project. The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report November 2009 Contents 1. Introduction 1 1.1 Background 1 1.2 Scope 1 1.3 Project Study Area 2 2. Methodology 4 2.1 Background and Approach 4 2.2 Demarcation of the Aquifer Study Area 4 2.3 Field Investigation of Proposed Bore Hole Sites 5 2.4 Overview of Ecological Values Descriptions 5 2.5 PER Guidelines 5 2.6 Desktop and Database Assessments 7 3. Database Searches and Survey Results 11 3.1 Information Sources 11 3.2 Species of National Environmental Significance 11 3.3 Queensland Species of Conservation Significance 18 3.4 Pest Species 22 3.5 Vegetation Communities 24 3.6 Regional Ecosystem Types and Integrity 28 3.7 Aquatic Values 31 3.8 World Heritage Values 53 3.9 Results of Field Investigation of Proposed Bore Hole Sites 54 4. References 61 Table Index Table 1: Summary of NES Matters Protected under Part 3 of the EPBC Act 5 Table 2 Summary of World Heritage Values within/adjacent Aquifer Area of Influence 6 Table 3: Species of NES Identified as Occurring within the Study Area 11 Table 4: Summary of Regional Ecosystems and Groundwater Dependencies 26 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report Table 5: Freshwater Fish Species in the Mulgrave River 36 Table 6: Estuarine Fish Species in the Mulgrave River 50 Table 7: Description of potential borehole field in Aloomba as of 20th August, 2009. 55 Figure Index Figure 1: Regional Ecosystem Conservation Status and Protected Species Observation 21 Figure 2: Vegetation Communities and Groundwater Dependencies 30 Figure 3: Locations of Study Sites 54 Appendices A Database Searches 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report 1. -
Contrasting Tempos of Sex Chromosome Degeneration In
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.17.300236; this version posted September 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Contrasting tempos of sex chromosome 2 degeneration in sticklebacks 3 4 5 Jason M. Sardell1*, Matthew P. Josephson2, Anne C. Dalziel3, 6 Catherine L. Peichel2, and Mark Kirkpatrick1 7 8 1 Department of Integrative Biology, University of Texas at Austin, Austin, TX 78712 9 2 Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland 10 3 Department of Biology, Saint Mary’s University, Halifax, NS, Canada B3H 3C3 11 * Corresponding author: [email protected] 12 13 RUNNING TITLE: Blackspotted stickleback sex chromosomes 14 KEY WORDS: Sex chromosomes, stickleback, Gasterosteus, neo-Y chromosome, 15 recombination, fish 16 17 Revised version submitted 16 July 2020; original version submitted 3 April 2020 18 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.17.300236; this version posted September 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 19 20 Abstract 21 The steps of sex chromosome evolution are often thought to follow a predictable pattern and tempo, but 22 few studies have examined how the outcomes of this process differ between closely related species with 23 homologous sex chromosomes. -
Appendix B Wells Harbor Ecology (Materials from the Wells NERR)
APPENDICES Appendix B Wells Harbor Ecology (materials from the Wells NERR) CHAPTER 8 Vegetation Caitlin Mullan Crain lants are primary producers that use photosynthesis ter). In this chapter, we will describe what these vegeta- to convert light energy into carbon. Plants thus form tive communities look like, special plant adaptations for Pthe base of all food webs and provide essential nutrition living in coastal habitats, and important services these to animals. In coastal “biogenic” habitats, the vegetation vegetative communities perform. We will then review also engineers the environment, and actually creates important research conducted in or affiliated with Wells the habitat on which other organisms depend. This is NERR on the various vegetative community types, giving particularly apparent in coastal marshes where the plants a unique view of what is known about coastal vegetative themselves, by trapping sediments and binding the communities of southern Maine. sediment with their roots, create the peat base and above- ground structure that defines the salt marsh. The plants OASTAL EGETATION thus function as foundation species, dominant C V organisms that modify the physical environ- Macroalgae ment and create habitat for numerous dependent Algae, commonly known as seaweeds, are a group of organisms. Other vegetation types in coastal non-vascular plants that depend on water for nutrient systems function in similar ways, particularly acquisition, physical support, and seagrass beds or dune plants. Vegetation is reproduction. Algae are therefore therefore important for numerous reasons restricted to living in environ- including transforming energy to food ments that are at least occasionally sources, increasing biodiversity, and inundated by water. -
An Annotated Bibliography of Diet Studies of Fish of the Southeast United States and Gray’S Reef National Marine Sanctuary
Marine Sanctuaries Conservation Series MSD-05-2 An annotated bibliography of diet studies of fish of the southeast United States and Gray’s Reef National Marine Sanctuary U.S. Department of Commerce February 2005 National Oceanic and Atmospheric Administration National Ocean Service Office of Ocean and Coastal Resource Management Marine Sanctuaries Division About the Marine Sanctuaries Conservation Series The National Oceanic and Atmospheric Administration’s Marine Sanctuary Division (MSD) administers the National Marine Sanctuary Program. Its mission is to identify, designate, protect and manage the ecological, recreational, research, educational, historical, and aesthetic resources and qualities of nationally significant coastal and marine areas. The existing marine sanctuaries differ widely in their natural and historical resources and include nearshore and open ocean areas ranging in size from less than one to over 5,000 square miles. Protected habitats include rocky coasts, kelp forests, coral reefs, sea grass beds, estuarine habitats, hard and soft bottom habitats, segments of whale migration routes, and shipwrecks. Because of considerable differences in settings, resources, and threats, each marine sanctuary has a tailored management plan. Conservation, education, research, monitoring and enforcement programs vary accordingly. The integration of these programs is fundamental to marine protected area management. The Marine Sanctuaries Conservation Series reflects and supports this integration by providing a forum for publication and discussion of the complex issues currently facing the National Marine Sanctuary Program. Topics of published reports vary substantially and may include descriptions of educational programs, discussions on resource management issues, and results of scientific research and monitoring projects. The series facilitates integration of natural sciences, socioeconomic and cultural sciences, education, and policy development to accomplish the diverse needs of NOAA’s resource protection mandate. -
Across-Shelf Larval, Postlarval, and Juvenile Fish Collected at Offshore Oil and Gas Platforms and a Coastal Rock Jetty West of the Mississippi River Delta
OCS Study MMS 2001-077 Coastal Marine Institute Across-Shelf Larval, Postlarval, and Juvenile Fish Collected at Offshore Oil and Gas Platforms and a Coastal Rock Jetty West of the Mississippi River Delta U .S . Department of the Interior AnK Cooperative Agreement Minerals 11Aanagement Service Coastal Marine Institute Adw Gulf of Mexico OCS Region Louisiana State University IR OCS Study MMS 2001-077 Coastal Marine Institute Across-Shelf Larval, Postlarval, and Juvenile Fish Collected at Offshore Oil and Gas Platforms and a Coastal Rock Jetty West of the Mississippi River Delta Authors Frank J. Hernandez, Jr. Richard F. Shaw Joseph S . Cope James G . Ditty Mark C. Benfield Talat Farooqi September 2001 Prepared under MMS Contract 14-35-0001-30660-19926 by Coastal Fisheries Institute Louisiana State University Baton Rouge, Louisiana 70803 Published by U .S. Department of the Interior Cooperative Agreement Minerals Management Service Coastal Marine Institute Gulf of Mexico OCS Region Louisiana State University DISCLAIMER This report was prepared under contract between the Minerals Management Service (MMS) and the Coastal Fisheries Institute (CFI), Louisiana State University (LSU). This report has been technically reviewed by the MMS and it has been approved for publication. Approval does not signify that the contents necessarily reflect the views and policies of LSU or the MMS, nor does mention of trades names or commercial products constitute endorsement or recommendation for use. It is, however, exempt from review and compliance with the MMS editorial standard. REPORT AVAILABILITY Extra copies of the report may be obtained from the Public Information Office (Mail Stop 5034) at the following address : U.S . -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night.