Microsatellite Genetic Differentiation Between Two Populations of European Catfish (Silurus Glanis) in Iran
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Journal of Survey in Fisheries Sciences 7(2) 123-132 2021 Microsatellite genetic differentiation between two populations of European catfish (Silurus glanis) in Iran Behmanesh Sh.1; Amiri A.2; Yarmohammadi M.3; Golshan M.4* Received: April 2020 Accepted: October 2020 Abstract In the present study the population genetic structure of European catfish in the Anzali Lagoon and Aras Lake were examined using microsatellite markers. Sixty fin clip samples of Silurus glanis from two regions were collected and for genetic analysis 6 microsatellite loci were used to assess the population genetic structure of S. glanis. There were significant differences based on average number of alleles per locus and heterozygosity between two populations (p<0.01). The observed heterozygosity (Ho) for each population (He) per locus was from 0.297 to 0.733 in Aras lake and Anzali lagoon samples, respectively.The Analysis of molecular variance (AMOVA) indicated that the proportion of the genetic variation attributed to differences among populations of the S. glanis was highly significant for both FST and RST (FST = 0.165, RST = 0.38, p<0.001). Excess or lacks of heterozygosity was observed but most of used microsatellite loci in selected areas were at Hardy-Weinberg equilibrium. Our finding showed the two populations are genetically separated, therefore fisheries management and restocking program of this species especially in Anzali Lagoon is recommended. Keywords: European Catfish, Genetic population, microsatellite markers Downloaded from sifisheriessciences.com at 11:34 +0330 on Thursday September 30th 2021 [ DOI: 10.18331/SFS2021.7.2.10 ] 1-Inland Waters Aquaculture Research Center, Iranian Fisheries Science Research Institute, Agricultural Research Education and Extension Organization (AREEO), Bandare Anzali, Iran 2- Department of Biology, Faculty of Fisheries Sciences Science, Ahvaz branch, Islamic Azad University, Ahvaz, Iran 3-International Sturgeon Research Institute, Agricultural Research Education and Extension Organization (AREEO), Rasht, Iran 4-Iranian Fisheries Science Research Institute, Agricultural Research, Education and Extension Organization, Tehran, Iran *Corresponding author's Email: [email protected] 124 Behmanesh et al., Microsatellite genetic differentiation between two populations of European … Introduction Although, allozyme (Triantafyllidis et Diversity plays important roles in al., 1999a) and mitochondrial DNA populations due to provide necessary (mtDNA) (Triantafyllidis et al., 1999b; spectrum of genotypes for adaptive Krieg et al., 2000) were examined to response to change environmental study population genetic of S. glanis, conditions (Webster et al., 2018). neither of them were able to reveal high Heterozygous individuals usually are levels of genetic variability to separate superior to less heterozygous wild and hatchery populations. Krieg et individuals in characteristics such as al. (1999) reported population growth, fertility, and disease resistance differentiation among different species (Beardmore et al., 1997). of Siluridae family using microsatellite Microsatellites are known as a simple markers. Triantafyllidis et al. (2002) sequence repeats (SSRs), simple showed that the genetic diversity was sequence length polymorphisms much higher than previous allozyme (SSLPs), or short tandem repeats and mtDNA studied on this species by (STR), are regions of DNA that exhibit using 10 microsatellite markers in short repetitive sequence motifs. These different areas. Quan et al. (2006) motifs are often composed of 1-6 base examined population structure and pair repeat sequences. Microsatellites genetic variation of northern sheatfish have been used as genetic markers to (S. soldatovi) in wild and farmed assess population genetic structure, populations using microsatellite broodstock identify for management in markers. Results showed that Ho and He hatcheries, evolutionary biology, and other heterozygosity parameters conservation biology and genetic were not different between populations. mapping (Triantafyllidist et al., 2002). Bahrami Kamangar et al. (2015) European catfish has global distribution investigated the genetic diversity and as a native or an introduced species genetic structure of four populations of (Cucherousset et al., 2018). Silurus Silurus glanis by microsatellite DNA glanis is well known as an economic markers. species and an important for S. glanis is one of the native species aquaculture industry (Rees et al., 2017). of Iran where mainly distributed in There are large number of studies have Anzali Lagoon and Aras Lake, north been conducted on reproductive cycles, and northwest of Iran. Due to genome manipulation and biology of overfishing and poor fisheries Downloaded from sifisheriessciences.com at 11:34 +0330 on Thursday September 30th 2021 [ DOI: 10.18331/SFS2021.7.2.10 ] gametes of S. glanis (Legendre et al., management, the capture production 1996; Smitherman et al., 1996; has been declined over the last decades. Varkonyi et al., 1998; Brzuska and Thus, the present study aimed to assess Adamek, 1999; Bolliet et al., 2001; genetic diversity of Iranian populations Kumar et al., 2017; Zibiene and Zibas, of S. glanis in Anzali Lagoon and Aras 2019; Linhart et al., 2020) but study of Lake regions using microsatellite DNA population genetic structure is rare. markers. Journal of Survey in Fisheries Sciences 7(2) 2021 125 Materials and methods some modifies in regents and annealing Sample collections and DNA extraction temperature. Six microsatellite loci for Sixty individuals of S. glanis were S. glanis were used and all of the loci obtained from two selected sites, Anzali have been described by Krieg et al. Lagoon (37°28′22″N 49°27′44″E) and (1999). Detailed information of these Aras Lake (39°05′28″N 45°24′08″E) microsatellite loci such reference, through trap and fin clips were taken forward and reverse primers, fragment and placed in 100% ethanol size and annealing temperature was immediately. Total DNA was extracted described in Table 1. The PCR from each individual using standard amplification was performed in a final SDS proteinase-K digestion; phenol: volume of 25 µL, containing 100 ng chloroform: isoamylalcohol extraction template DNA, 10 mM forward and and ethanol precipitation as described in reverse primers, 200 µm of dNTPs, 0.5 Hillis et al. (1996). The quality and u/µL of taq DNA polymerase (Cinagen, quantity of extracted DNA and Iran), 50 mM MgCl2, 10X PCR buffer Polymerase chain reaction (PCR) was and distilled water using BIOER examined by 1% agarose gel thermal cycler (XP cycler gradient, 96 electrophoresis and nanodrop plus, Bioer, China) under the following spectrophotometery (ND 1000, USA) conditions: initial denaturation of 4 min respectively. at 94ºC (primary denaturation) followed by 30 cycles of 30 s denaturation at PCR profiles and primer sequences 94ºC, 60 s at the respective annealing The PCR amplifications were done temperature, and 60 s extension at 72ºC, according to Krieg et al. (1999) with finishing with 10 min at 72oC as the elongation period. Table 1: Information of 6 polymorphic microsatellite loci used in the present study. Annealing Locus Primer (5’-3’) Size (bp) Reference temp. (ºC) F-CCACTTATGCACCTGAAGG Sgl33INRA R-GGCCAATTAAACAGGTACAG 150-200 58 F-CCAATTTACCTCAGACTACTTCTG Sgl5fINRA R-GCACGTGCAAAGTCCTG 125-210 55 F-CTTTGGTGAGTCAGAAACACG Sgl695INRA R-GCACTACTGGTAGATGCT 180-250 56 Krieg et al. (1999) F-CTGCTCAATCAAAGTTGGTTC Downloaded from sifisheriessciences.com at 11:34 +0330 on Thursday September 30th 2021 [ DOI: 10.18331/SFS2021.7.2.10 ] Sgl7159INRA R-CAAACTAAGTTCAGCCAGGC 220-300 55 F-GTGAATGTGCTTTAAGGGC Sgl7eINRA R-GTTCATGGTGTCACTGCG 200-300 59 F-GGCTGTATGTTAAGTTATTTTCAG Sgl7fINRA 220-300 60 R-CTGAGCAGTGGCCAGAATG 126 Behmanesh et al., Microsatellite genetic differentiation between two populations of European … Gel electrophoresis and statistical (Cleaver Scientific Ltd, UK). Gel run analyses was carried out at 120 V until the The PCR products were separated by loading buffer reached the bottom of electrophoresis through 6% (w/v) the plate. After electrophoresis, the gel polyacrylamide gel (29:1 acrylamide: was stained with a silver nitrate bis acrylamide; 1x TBE buffer) using a protocol (Fig. 1). Cleaver gel electrophoresis system Figure 1: Polyacrylamide electrophoresis patterns of Silurus glanis in the locus Sg133INRA. Microsatellite alleles were identified by examine the partition of variance their size in base pairs (Peakall and between and within two populations. Smouse, 2006). Allele lengths were estimated by comparison with a 100 bp Results DNA marker ladder (Fermentas GmbH, PCR amplification Germany). Measures of genetic Eight microsatellite loci were diversity were determined for each successfully amplified where two sets population including, number of alleles (Sgl310INRA and Sgl325INRA) per locus, observed heterozygosity (Ho), showed monomorphic bands in two expected heterozygosity (He) and populations and six sets produced deviations from Hardy-Weinberg polymorphic bands (Table 2). Locus equilibrium (HWE) between pairwise Sgl5fINRA in samples of Anzali loci. The genetic distance between Lagoon showed highest number of populations of two areas was estimated alleles (12) and locus Sgl7eINRA in using the Nei’s standard genetic samples of Aras Lake presented the distance index (Nei, 1972). The lowest (4) (Table 2). pairwise differentiation between populations of the two areas was also Genetic variations of microsatellite loci Downloaded from