Article The Fungicide Chlorothalonil Changes the Amphibian Skin Microbiome: A Potential Factor Disrupting a Host Disease-Protective Trait Randall R. Jiménez 1,2,* , Gilbert Alvarado 3,4, Clemens Ruepert 5 , Erick Ballestero 6 and Simone Sommer 1 1 Institute of Evolutionary Ecology and Conservation Genomics, University of Ulm, 89069 Ulm, Germany;
[email protected] 2 Center for Conservation Genomics, Smithsonian National Zoological Park and Conservation Biology Institute, Washington, DC 20008, USA 3 Laboratory of Comparative Wildlife Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo 05508-060, Brazil;
[email protected] 4 Laboratory of Experimental and Comparative Pathology (LAPECOM), Biology School, University of Costa Rica, San José 2060, Costa Rica 5 Instituto Regional de Estudios en Sustancias Toxicas (IRET), Universidad Nacional, Heredia 3000, Costa Rica;
[email protected] 6 Escuela de Ciencias Biológicas, Universidad Nacional, Heredia 3000, Costa Rica;
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[email protected] Abstract: The skin microbiome is an important part of amphibian immune defenses and protects against pathogens such as the chytrid fungus Batrachochytrium dendrobatidis (Bd), which causes the skin disease chytridiomycosis. Alteration of the microbiome by anthropogenic factors, like pesticides, Citation: Jiménez, R.R.; Alvarado, G.; can impact this protective trait, disrupting its functionality. Chlorothalonil is a widely used fungicide Ruepert, C.; Ballestero, E.; Sommer, S. that has been recognized as having an impact on amphibians, but so far, no studies have investigated The Fungicide Chlorothalonil its effects on amphibian microbial communities. In the present study, we used the amphibian Changes the Amphibian Skin Lithobates vibicarius from the montane forest of Costa Rica, which now appears to persist despite Microbiome: A Potential Factor ongoing Bd-exposure, as an experimental model organism.