Re-Evaluating the Phylogeny of Sipuncula Through Transcriptomics ⇑ Sarah Lemer A, ,1, Gisele Y
Molecular Phylogenetics and Evolution 83 (2015) 174–183 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Re-evaluating the phylogeny of Sipuncula through transcriptomics ⇑ Sarah Lemer a, ,1, Gisele Y. Kawauchi a,b,1, Sónia C.S. Andrade a,c, Vanessa L. González a,d, Michael J. Boyle e, Gonzalo Giribet a a Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA b CEBIMar, Universidade de São Paulo, Praia do Cabelo Gordo, São Sebastião, São Paulo, Brazil c Departamento de Zootecnia, ESALQ-USP, Piracicaba, São Paulo, Brazil d Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA e Smithsonian Tropical Research Institute (STRI), Naos Marine Laboratories, Panama 0843/03092, Panama article info abstract Article history: Sipunculans (also known as peanut worms) are an ancient group of exclusively marine worms with a Received 21 July 2014 global distribution and a fossil record that dates back to the Early Cambrian. The systematics of sipuncu- Revised 17 October 2014 lans, now considered a distinct subclade of Annelida, has been studied for decades using morphological Accepted 23 October 2014 and molecular characters, and has reached the limits of Sanger-based approaches. Here, we reevaluate Available online 30 October 2014 their family-level phylogeny by comparative transcriptomic analysis of eight species representing all known families within Sipuncula. Two data matrices with alternative gene occupancy levels (large matrix Keywords: with 675 genes and 62% missing data; reduced matrix with 141 genes and 23% missing data) were ana- Annelida lysed using concatenation and gene-tree methods, yielding congruent results and resolving each internal Peanut worms Phylogenomics node with maximum support.
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