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New Applications of Cyclobutadiene Cycloadditions: Diversity and Target Oriented Synthesis
New Applications of Cyclobutadiene Cycloadditions: Diversity and Target Oriented Synthesis Author: Jason Joseph Marineau Persistent link: http://hdl.handle.net/2345/1741 This work is posted on eScholarship@BC, Boston College University Libraries. Boston College Electronic Thesis or Dissertation, 2010 Copyright is held by the author, with all rights reserved, unless otherwise noted. Boston College The Graduate School of Arts and Sciences Department of Chemistry NEW APPLICATIONS OF CYCLOBUTADIENE CYCLOADDITIONS: DIVERSITY AND TARGET ORIENTED SYNTHESIS a dissertation by JASON JOSEPH MARINEAU submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy December 2010 © Copyright by JASON JOSEPH MARINEAU 2010 New Applications of Cyclobutadiene Cycloadditions: Diversity and Target Oriented Synthesis Jason J. Marineau Thesis Advisor: Professor Marc. L. Snapper Abstract Cyclobutadiene cycloadditions provide rapid access to rigid polycyclic systems with high strain energy and unusual molecular geometries. Further functionalization of these systems allows entry into unexplored chemical space. A tricarbonylcyclobutadiene iron complex on solid support enables exploration of these cycloadditions in a parallel format amenable to diversity oriented synthesis. Modeling of the cycloaddition transition states with density functional calculations provides a theoretical basis for analysis of the regioselectivity observed in generation of these substituted bicyclo[2.2.0]hexene derivatives. The high strain energy accessible in cyclobutadiene cycloadducts and their derivatives renders them useful synthons for access to medium-ring natural products through ring expansion. Torilin, a guaiane sesquiterpene isolated from extracts of the fruits of Torilis japonica, exhibits a range of biological activities including testosterone 5 -reductase inhibition, hKv1.5 channel blocking, hepatoprotective, anti-inflammatory and anti-cancer effects. -
CHEMISTRY 412/512 MIDTERM # 1 – Answer Key February 14, 2007 1
CHEMISTRY 412/512 MIDTERM # 1 – answer key February 14, 2007 1. (8 pts) Acyl cations ( RCO ) are key intermediates in Friedel – Crafts acylation reactions. They are stabilized by the presence of oxygen and this can be demonstrated through either resonance or MO analysis. a. Consider the formyl cation, shown below. Show how it is stabilized, using appropriate resonance structures. HCO formyl cation HCO HCO Acyl cations are stabilized by conjugation of one of the lone pairs at the oxygen center. b. Construct the orbital mixing diagram for the formyl cation, starting with group orbitals for CH and O-atom. Consider only first order mixing. Place the appropriate number of valence electrons and demonstrate how QMOT explains the stabilization of the cation. O HC The mixing diagram clearly shows the formation of TWO equivalent π-bonds, which is analogous to the resonance structure on the right, i.e. there is significant contribution by the O-atom. 2. (6 pts) Antiaromatic molecules avoid antiaromaticity by structural distortion. For example, cyclobutadiene is not square (and antiaromatic) but rectangular. Show, using π-group orbital analysis, that such distortion would indeed be stabilizing. square rectangular Solution: Instability of square cyclobutadiene is due to the presence of two degenerate, half-filled π-molecular orbitals (π2 and π3). In the rectangular form, qualitatively, the MOs remain the same, but the strength of some bonding/antibonding interactions is affected and it causes the degeneracy to be lifted. Focus on π2 and π3. Upon stretching, the antibonding interaction in π2 is reduced, while the same geometric distortion leads to reduction of the bonding interaction in π3. -
An Indicator of Triplet State Baird-Aromaticity
inorganics Article The Silacyclobutene Ring: An Indicator of Triplet State Baird-Aromaticity Rabia Ayub 1,2, Kjell Jorner 1,2 ID and Henrik Ottosson 1,2,* 1 Department of Chemistry—BMC, Uppsala University, Box 576, SE-751 23 Uppsala, Sweden; [email protected] (R.A.); [email protected] (K.J.) 2 Department of Chemistry-Ångström Laboratory Uppsala University, Box 523, SE-751 20 Uppsala, Sweden * Correspondence: [email protected]; Tel.: +46-18-4717476 Received: 23 October 2017; Accepted: 11 December 2017; Published: 15 December 2017 Abstract: Baird’s rule tells that the electron counts for aromaticity and antiaromaticity in the first ππ* triplet and singlet excited states (T1 and S1) are opposite to those in the ground state (S0). Our hypothesis is that a silacyclobutene (SCB) ring fused with a [4n]annulene will remain closed in the T1 state so as to retain T1 aromaticity of the annulene while it will ring-open when fused to a [4n + 2]annulene in order to alleviate T1 antiaromaticity. This feature should allow the SCB ring to function as an indicator for triplet state aromaticity. Quantum chemical calculations of energy and (anti)aromaticity changes along the reaction paths in the T1 state support our hypothesis. The SCB ring should indicate T1 aromaticity of [4n]annulenes by being photoinert except when fused to cyclobutadiene, where it ring-opens due to ring-strain relief. Keywords: Baird’s rule; computational chemistry; excited state aromaticity; Photostability 1. Introduction Baird showed in 1972 that the rules for aromaticity and antiaromaticity of annulenes are reversed in the lowest ππ* triplet state (T1) when compared to Hückel’s rule for the electronic ground state (S0)[1–3]. -
Annex XV Report
Annex XV report PROPOSAL FOR IDENTIFICATION OF A SUBSTANCE OF VERY HIGH CONCERN ON THE BASIS OF THE CRITERIA SET OUT IN REACH ARTICLE 57 Substance Name(s): 1,6,7,8,9,14,15,16,17,17,18,18- Dodecachloropentacyclo[12.2.1.16,9.02,13.05,10]octadeca-7,15-diene (“Dechlorane Plus”TM) [covering any of its individual anti- and syn-isomers or any combination thereof] EC Number(s): 236-948-9; -; - CAS Number(s): 13560-89-9; 135821-74-8; 135821-03-3 Submitted by: United Kingdom Date: 29 August 2017 ANNEX XV – IDENTIFICATION OF DECHLORANE PLUS AS SVHC CONTENTS PROPOSAL FOR IDENTIFICATION OF A SUBSTANCE OF VERY HIGH CONCERN ON THE BASIS OF THE CRITERIA SET OUT IN REACH ARTICLE 57..........................................................................................IV PART I ...............................................................................................................................................1 JUSTIFICATION ..................................................................................................................................1 1. IDENTITY OF THE SUBSTANCE AND PHYSICAL AND CHEMICAL PROPERTIES ...................................2 1.1 Name and other identifiers of the substance................................................................................2 1.2 Composition of the substance ........................................................................................................2 1.3 Identity and composition of degradation products/metabolites relevant for the SVHC assessment ....................................................................................................................................3 -
Cycloalkanes, Cycloalkenes, and Cycloalkynes
CYCLOALKANES, CYCLOALKENES, AND CYCLOALKYNES any important hydrocarbons, known as cycloalkanes, contain rings of carbon atoms linked together by single bonds. The simple cycloalkanes of formula (CH,), make up a particularly important homologous series in which the chemical properties change in a much more dramatic way with increasing n than do those of the acyclic hydrocarbons CH,(CH,),,-,H. The cyclo- alkanes with small rings (n = 3-6) are of special interest in exhibiting chemical properties intermediate between those of alkanes and alkenes. In this chapter we will show how this behavior can be explained in terms of angle strain and steric hindrance, concepts that have been introduced previously and will be used with increasing frequency as we proceed further. We also discuss the conformations of cycloalkanes, especially cyclo- hexane, in detail because of their importance to the chemistry of many kinds of naturally occurring organic compounds. Some attention also will be paid to polycyclic compounds, substances with more than one ring, and to cyclo- alkenes and cycloalkynes. 12-1 NOMENCLATURE AND PHYSICAL PROPERTIES OF CYCLOALKANES The IUPAC system for naming cycloalkanes and cycloalkenes was presented in some detail in Sections 3-2 and 3-3, and you may wish to review that ma- terial before proceeding further. Additional procedures are required for naming 446 12 Cycloalkanes, Cycloalkenes, and Cycloalkynes Table 12-1 Physical Properties of Alkanes and Cycloalkanes Density, Compounds Bp, "C Mp, "C diO,g ml-' propane cyclopropane butane cyclobutane pentane cyclopentane hexane cyclohexane heptane cycloheptane octane cyclooctane nonane cyclononane "At -40". bUnder pressure. polycyclic compounds, which have rings with common carbons, and these will be discussed later in this chapter. -
Using SMILES Strings for the Description of Chemical Connectivity in the Crystallography Open Database
Quirós et al. J Cheminform (2018) 10:23 https://doi.org/10.1186/s13321-018-0279-6 RESEARCH ARTICLE Open Access Using SMILES strings for the description of chemical connectivity in the Crystallography Open Database Miguel Quirós1* , Saulius Gražulis2,3 , Saulė Girdzijauskaitė3, Andrius Merkys2 and Antanas Vaitkus2 Abstract Computer descriptions of chemical molecular connectivity are necessary for searching chemical databases and for predicting chemical properties from molecular structure. In this article, the ongoing work to describe the chemical connectivity of entries contained in the Crystallography Open Database (COD) in SMILES format is reported. This col- lection of SMILES is publicly available for chemical (substructure) search or for any other purpose on an open-access basis, as is the COD itself. The conventions that have been followed for the representation of compounds that do not ft into the valence bond theory are outlined for the most frequently found cases. The procedure for getting the SMILES out of the CIF fles starts with checking whether the atoms in the asymmetric unit are a chemically accept- able image of the compound. When they are not (molecule in a symmetry element, disorder, polymeric species,etc.), the previously published cif_molecule program is used to get such image in many cases. The program package Open Babel is then applied to get SMILES strings from the CIF fles (either those directly taken from the COD or those produced by cif_molecule when applicable). The results are then checked and/or fxed by a human editor, in a computer-aided task that at present still consumes a great deal of human time. -
Estimation of Thermophysical Properties of Athabasca Vacuum Residue Using a Single Molecule Representation 7 1.3
TABLE OF CONTENTS Page 1. INTRODUCTION 1 1.1. Motivation 1 1.2. Background 2 1.2.1. Athabasca Vacuum Residue and its molecular structure 3 1.2.2. Estimation of thermophysical properties of Athabasca Vacuum Residue using a single molecule representation 7 1.3. Research Objectives 8 2. LITERATURE REVIEW 9 2.1. Phase Equilibrium 10 2.1.1. Basic equations of phase equilibrium 12 2.2. Cubic Equations of State (EOS) 13 2.2.1. Peng-Robinson Equation of State 14 2.3. Group Contribution Concept 15 2.4. Group Contribution Based Equations of State 16 2.4.1. Characteristics of the GC Method 17 2.4.2. Estimation of parameter b 19 2.4.3. Estimation of temperature dependent parameter a 19 2.4.4. Estimation of the shape parameter m 20 2.4.5. Estimation of the parameter a at the boiling point temperature a(Tb) 23 2.4.6. Estimation of the temperature dependent parameter c 24 2.4.7. Estimation of boiling point temperature using the group contribution concept 26 2.4.8. Performance and limitations of the GC Method 29 2.4.9. Simplification of the GC method applicable to mixtures (Crampon et al., 2003) 30 2.5. Application of the GC Method to mixtures 33 2.6. Phase Equilibrium Calculations 35 2.6.1. Equilibrium calculations for single compounds 35 1 2.6.2. Stability Criteria 37 2.6.3. The Tangent Plane Criterion 38 2.6.4. Numerical Solutions in Equilibrium Calculations 40 3. METHODOLOGY 48 3.1. Scope of Project 48 3.2. -
Cyclobutadiene
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Published in "Angewandte Chemie International Edition 45(40): 6616 - 6619, 20 provided by RERO DOC Digital Library which should be cited to refer to this work. Cyclobutadiene: The Antiaromatic Paradigm? Thomas Bally* Keywords: In memory of Satoru Masamune antiaromaticity · cyclobutadiene · thermochemistry (1928–2003) There is probably no other single widely accepted (and hardly disputed) London proposed in 1937 a very appeal- molecule that has fascinated experimen- that benzene, with its six cyclically ing model that accounts for these effects tal and theoretical chemists so consis- delocalized p electrons, represents the in terms of ring currents that are in- tently over the past 40 years as has paradigm of aromaticity. In view of the duced by the external magnetic field in cyclobutadiene (CBD). On average, famous Hckel 4n/4n + 2 electron rule, the system of cyclically delocalized 16 publications which deal, in one form one is tempted to rush to the conclusion p electrons.[5] or another, with the parent compound that CBD, with its four cyclically delo- There has been a vigorous debate in p C4H4 and 40 which deal with cyclo- calized electrons, is therefore the recent years about whether and to what butdienes in general have appeared in paradigm of antiaromaticity. extent these ring currents contribute to every year of this time span, and there However, this conclusion is not as the deshielding or shielding of protons are probably many more on derivatives straightforward as it might seem, be- attached to aromatic or antiaromatic and metal complexes. -
2.5 Cycloalkanes and Skeletal Structures 67
02_BRCLoudon_pgs4-4.qxd 11/26/08 8:36 AM Page 67 2.5 CYCLOALKANES AND SKELETAL STRUCTURES 67 Likewise, the hydrogens bonded to each type of carbon are called primary, secondary, or ter- tiary hydrogens, respectively. primary hydrogens CH3 CH3 H3C CH2 CH2 "CH "C CH3 L L L LL L "CH primary hydrogens secondary hydrogens 3 tertiary hydrogen PROBLEMS 2.10 In the structure of 4-isopropyl-2,4,5-trimethylheptane (Problem 2.9) (a) Identify the primary, secondary, tertiary, and quaternary carbons. (b) Identify the primary, secondary, and tertiary hydrogens. (c) Circle one example of each of the following groups: a methyl group; an ethyl group; an isopropyl group; a sec-butyl group; an isobutyl group. 2.11 Identify the ethyl groups and the methyl groups in the structure of 4-sec-butyl-5-ethyl-3- methyloctane, the compound discussed in Study Problem 2.5. Note that these groups are not necessarily confined to those specifically mentioned in the name. 2.5 CYCLOALKANES AND SKELETAL STRUCTURES Some alkane contain carbon chains in closed loops, or rings; these are called cycloalkanes. Cycloalkanes are named by adding the prefix cyclo to the name of the alkane. Thus, the six- membered cycloalkane is called cyclohexane. CH2 H C CH 2 M % 2 H2""C CH2 %CHM2 cyclohexane The names and some physical properties of the simple cycloalkanes are given in Table 2.3. The general formula for an alkane containing a single ring has two fewer hydrogens than that of the open-chain alkane with the same number of carbon atoms. -
The Relation Between Ring Currents and Aromatic Stabilization Energies for Assessing the Degree of Aromaticity
The Relation Between Ring Currents and Aromatic Stabilization Energies for Assessing the Degree of Aromaticity Chandan Kumar,y Heike Fliegl,∗,y and Dage Sundholm∗,z yCentre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O.Box 1033, N-1315 Blindern, Norway zDepartment of Chemistry, University of Helsinki, P.O. Box 55 (A. I. Virtanens Plats 1), FIN-00014, Finland E-mail: heike.fl[email protected]; [email protected].fi 1 Abstract Magnetically induced ring-current strength susceptibilities and nucleus independent chemical shifts (NICS) have been studied for 15 single-ring aromatic, antiaromatic and nonaromatic molecules. The current densities have been calculated at the density func- tional theory (DFT), Hartree-Fock (HF), and second-order Møller-Plesset perturbation theory (MP2) levels using the gauge-including magnetically induced current method (GIMIC). The ring-current strength susceptibilities have been obtained by numerical integration of the current density flowing around the molecular ring. The calculated ring-current strength susceptibilities are almost independent of the level of theory. The relative degree of aromaticity deduced from the magnetic properties has been compared with the ones deduced from hydrogenation enthalpies that are considered to be propor- tional to aromatic stabilization energies (ASE). For the studied single-ring molecules, GIMIC, NICS and ASE calculations yield similar trends. The study shows that there is a linear correlation between the magnetic and energetic criteria of aromaticity. The largest uncertainty originates from the accuracy of the energy data, because they are much more dependent on the employed computational level than the calculated mag- netic properties. Thus, ring-current strength susceptibilities can be used for assessing the degree of aromaticity. -
Highly Unsaturated Binuclear Butadiene Iron Carbonyls: Quintet Spin States, Perpendicular Structures, Agostic Hydrogen Atoms, and Iron-Iron Multiple Bonds
Int. J. Mol. Sci. 2011, 12, 2216-2231; doi:10.3390/ijms12042216 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 http://www.mdpi.com/journal/ijms Article Highly Unsaturated Binuclear Butadiene Iron Carbonyls: Quintet Spin States, Perpendicular Structures, Agostic Hydrogen Atoms, and Iron-Iron Multiple Bonds Yi Zeng 1, Shijian Wang 1, Hao Feng 1,*, Yaoming Xie 2 and R. Bruce King 2,* 1 School of Physics and Chemistry, Research Center for Advanced Computation, Xihua University, Chengdu, China; E-Mails: [email protected] (Y.Z.); [email protected] (S.W.) 2 Department of Chemistry and Center for Computational Chemistry; University of Georgia, Athens, GA 30602, USA; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (H.F.); [email protected] (R.B.K.); Tel.: +86-28-87727663 (H.F.); +1-706-542-1901 (R.B.K.); Fax: +1-706-542-9454 (R.B.K.). Received: 22 February 2011; in revised form: 8 March 2011 / Accepted: 14 March 2011 / Published: 30 March 2011 Abstract: The highly unsaturated binuclear butadiene iron carbonyls (C4H6)2Fe2(CO)n (n = 2, 1) have been examined using density functional theory. For (C4H6)2Fe2(CO)n (n = 2, 1), both coaxial and perpendicular structures are found. The global minima of (C4H6)2Fe2(CO)n (n = 2, 1) are the perpendicular structures 2Q-1 and 1Q-1, respectively, with 17- and 15-electron configurations for the iron atoms leading to quintet spin states. The Fe=Fe distance of 2.361 Å (M06-L) in the (C4H6)2Fe2(CO)2 structure 2Q-1 suggests a formal double bond. -
Fluorinated Butatrienes
Fluorinated Butatrienes Dissertation zur Erlangung des akademischen Grades des Doktors der Naturwissenschaften (Dr. rer. nat.) eingereicht im Fachbereich Biologie, Chemie, Pharmazie der Freien Universität Berlin vorgelegt von Dipl.-Chem. Christian Ehm aus Berlin Berlin, April 2010 1. Gutachter: Prof. Dr. Dieter Lentz 2. Gutachter: Prof. Dr. Beate Paulus Disputation am 28.6.2010 I Acknowledgements It would not have been possible to write this doctoral thesis without the help and support of the kind people around me, to only some of whom it is possible to give particular mention here. First and foremost I would like to thank my principal supervisor, Professor Dieter Lentz, for the opportunity of doing research in his group. Without his continuous support and encouragement this thesis would not be in the present state. I highly appreciate that Professor Beate Paulus has agreed to be co-referee of my thesis. I would like to cordially thank Lada for her love and patience as well as her interest in my research. Special thanks to my family for their continuous support and love. I would like to thank Mike Roland, Sten Dathe and Sven Wünsche for their friendship and the fun we have had every Sunday evening. Special thanks to Sebastian Freitag, Boris Bolsinger and Frederic Heinrich for their friendship. They deserve much gratefulness for keeping me on the right way. I would like to thank all my colleagues at the Institut für Chemie und Biochemie, Abteilung Anorganische Chemie. In particular I want to thank all members of the Lentz group, Thomas Hügle, Moritz Kühnel, Dr. Floris Akkerman, Dr.