Streptomyces and Dermatophilus
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Human and Animal Dermatophilosis. an Unusual Case Report and Review of the Literature
ORIGINAL ARTICLES Human and animal dermatophilosis. An unusual case report and review of the literature Cinthia Dickson1, María Rosa I. de Elías-Costa2 ABSTRACT Dermatophilosis is an acute, subacute or chronic skin disease affecting a wide range of species of Keywords: animals and man. It is caused by a Gram (+) bacteria of the order of the Actinomycetales named Dermatophilus congolensis. Presenting as an acute, subacute or chronic dermatosis affecting Dermatophilus primarily cattle, but a wide variety of domestic and wild animals, and humans, as well. It is congolensis, distributed worldwide but more prevalent in the humid tropical and subtropic areas. It is essential dermatophilosis. to emphasize the importance of this disease in livestock industry and leather production. The disease is reviewed and an unusual case is reported (Dermatol Argent 2010;16(5):349-353). Date Received: 27/7/2010 | Date Accepted: 27/05/2011 Introduction The disease was first described in 1910 by Van Saceghem1 in the Belgian Congo as "contagious derma- titis" (dermatose contagieuse) in cattle. In 1926 the term nodular disease estreptotricosis or lumpy wool disease to refer to the disorder observed in sheep, a name that was later abandoned to avoid etiological confusion.2 Since then, there have been numerous reports on a wide range of animals, including terres- trial and aquatic mammals and repiles as well. The most affected animals are cows, sheep and horses, but it is also observed in goats and pigs. The disease is rarely found in dogs and cats.3 In humans very few cases have been reported.4-9 The disease has worldwide distribution but is prevalent in tropical and subtropical regions with high levels of humidity. -
Kaistella Soli Sp. Nov., Isolated from Oil-Contaminated Soil
A001 Kaistella soli sp. nov., Isolated from Oil-contaminated Soil Dhiraj Kumar Chaudhary1, Ram Hari Dahal2, Dong-Uk Kim3, and Yongseok Hong1* 1Department of Environmental Engineering, Korea University Sejong Campus, 2Department of Microbiology, School of Medicine, Kyungpook National University, 3Department of Biological Science, College of Science and Engineering, Sangji University A light yellow-colored, rod-shaped bacterial strain DKR-2T was isolated from oil-contaminated experimental soil. The strain was Gram-stain-negative, catalase and oxidase positive, and grew at temperature 10–35°C, at pH 6.0– 9.0, and at 0–1.5% (w/v) NaCl concentration. The phylogenetic analysis and 16S rRNA gene sequence analysis suggested that the strain DKR-2T was affiliated to the genus Kaistella, with the closest species being Kaistella haifensis H38T (97.6% sequence similarity). The chemotaxonomic profiles revealed the presence of phosphatidylethanolamine as the principal polar lipids;iso-C15:0, antiso-C15:0, and summed feature 9 (iso-C17:1 9c and/or C16:0 10-methyl) as the main fatty acids; and menaquinone-6 as a major menaquinone. The DNA G + C content was 39.5%. In addition, the average nucleotide identity (ANIu) and in silico DNA–DNA hybridization (dDDH) relatedness values between strain DKR-2T and phylogenically closest members were below the threshold values for species delineation. The polyphasic taxonomic features illustrated in this study clearly implied that strain DKR-2T represents a novel species in the genus Kaistella, for which the name Kaistella soli sp. nov. is proposed with the type strain DKR-2T (= KACC 22070T = NBRC 114725T). [This study was supported by Creative Challenge Research Foundation Support Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF- 2020R1I1A1A01071920).] A002 Chitinibacter bivalviorum sp. -
Improved Taxonomy of the Genus Streptomyces
UNIVERSITEIT GENT Faculteit Wetenschappen Vakgroep Biochemie, Fysiologie & Microbiologie Laboratorium voor Microbiologie Improved taxonomy of the genus Streptomyces Benjamin LANOOT Scriptie voorgelegd tot het behalen van de graad van Doctor in de Wetenschappen (Biochemie) Promotor: Prof. Dr. ir. J. Swings Co-promotor: Dr. M. Vancanneyt Academiejaar 2004-2005 FACULTY OF SCIENCES ____________________________________________________________ DEPARTMENT OF BIOCHEMISTRY, PHYSIOLOGY AND MICROBIOLOGY UNIVERSITEIT LABORATORY OF MICROBIOLOGY GENT IMPROVED TAXONOMY OF THE GENUS STREPTOMYCES DISSERTATION Submitted in fulfilment of the requirements for the degree of Doctor (Ph D) in Sciences, Biochemistry December 2004 Benjamin LANOOT Promotor: Prof. Dr. ir. J. SWINGS Co-promotor: Dr. M. VANCANNEYT 1: Aerial mycelium of a Streptomyces sp. © Michel Cavatta, Academy de Lyon, France 1 2 2: Streptomyces coelicolor colonies © John Innes Centre 3: Blue haloes surrounding Streptomyces coelicolor colonies are secreted 3 4 actinorhodin (an antibiotic) © John Innes Centre 4: Antibiotic droplet secreted by Streptomyces coelicolor © John Innes Centre PhD thesis, Faculty of Sciences, Ghent University, Ghent, Belgium. Publicly defended in Ghent, December 9th, 2004. Examination Commission PROF. DR. J. VAN BEEUMEN (ACTING CHAIRMAN) Faculty of Sciences, University of Ghent PROF. DR. IR. J. SWINGS (PROMOTOR) Faculty of Sciences, University of Ghent DR. M. VANCANNEYT (CO-PROMOTOR) Faculty of Sciences, University of Ghent PROF. DR. M. GOODFELLOW Department of Agricultural & Environmental Science University of Newcastle, UK PROF. Z. LIU Institute of Microbiology Chinese Academy of Sciences, Beijing, P.R. China DR. D. LABEDA United States Department of Agriculture National Center for Agricultural Utilization Research Peoria, IL, USA PROF. DR. R.M. KROPPENSTEDT Deutsche Sammlung von Mikroorganismen & Zellkulturen (DSMZ) Braunschweig, Germany DR. -
The BK Bioreactor a Mobile Research Library for the Unseen the Bionetwork
The BK BioReactor A Mobile Research Library for the Unseen THE BioNETWORK Microbiology of the Gowanus Canal Nucleus - The BK BioReactor N: Bio’reac’tor; an engineered device or system that supports a biologically active environment, esp. Nodes - Smart Docks to synthesize useful substances or to break down harmful ones. Nodes - Analog Docks The Gowanus Canal is scheduled to undergo dredging and sub-aquatic capping as part of the Horizontal Surfaces - Event Spaces USEPA Superfund Cleanup plan beginning in 2016. Alternatively microbiologists are drawing Vertical Surfaces - Projection Walls attention to polluted urban environments as they discover new communities of microorganisms capable of biologically processing pollutants. In reaction to the announcements to cap the canal, the study team commenced a microbiome analysis of sediment samples to ensure the taxonomy and potentially unique cellular functions of microbial communities in the Gowanus Canal are catalogued and studied before dredging operations eliminate access. The BK BioReactor is an infrastructural BioNetwork designed to support and propel these investigations into the future and generate an active space for the community to inquire, investigate and project findings back to the community. Akin to the canoes in which our D.I.Y. investigations occurred and central to the BK BioReactor is a roving watercraft, which is capable of docking at The BK BioReactor specific locations along the canal for sampling events and to showcase research findings through the activation of vestigial spaces. As an open platform to support individual study, community - Mobile Watercraft Original Sampling Site engagement, and synthetic biology, the mobile research station aspires to embody the public library - Research Library - Roll-Out Program Venue MAPPING MODES Sewers of the future. -
Ep 2434019 A1
(19) & (11) EP 2 434 019 A1 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 28.03.2012 Bulletin 2012/13 C12N 15/82 (2006.01) C07K 14/395 (2006.01) C12N 5/10 (2006.01) G01N 33/50 (2006.01) (2006.01) (2006.01) (21) Application number: 11160902.0 C07K 16/14 A01H 5/00 C07K 14/39 (2006.01) (22) Date of filing: 21.07.2004 (84) Designated Contracting States: • Kamlage, Beate AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 12161, Berlin (DE) HU IE IT LI LU MC NL PL PT RO SE SI SK TR • Taman-Chardonnens, Agnes A. 1611, DS Bovenkarspel (NL) (30) Priority: 01.08.2003 EP 03016672 • Shirley, Amber 15.04.2004 PCT/US2004/011887 Durham, NC 27703 (US) • Wang, Xi-Qing (62) Document number(s) of the earlier application(s) in Chapel Hill, NC 27516 (US) accordance with Art. 76 EPC: • Sarria-Millan, Rodrigo 04741185.5 / 1 654 368 West Lafayette, IN 47906 (US) • McKersie, Bryan D (27) Previously filed application: Cary, NC 27519 (US) 21.07.2004 PCT/EP2004/008136 • Chen, Ruoying Duluth, GA 30096 (US) (71) Applicant: BASF Plant Science GmbH 67056 Ludwigshafen (DE) (74) Representative: Heistracher, Elisabeth BASF SE (72) Inventors: Global Intellectual Property • Plesch, Gunnar GVX - C 6 14482, Potsdam (DE) Carl-Bosch-Strasse 38 • Puzio, Piotr 67056 Ludwigshafen (DE) 9030, Mariakerke (Gent) (BE) • Blau, Astrid Remarks: 14532, Stahnsdorf (DE) This application was filed on 01-04-2011 as a • Looser, Ralf divisional application to the application mentioned 13158, Berlin (DE) under INID code 62. -
Genomic and Phylogenomic Insights Into the Family Streptomycetaceae Lead to Proposal of Charcoactinosporaceae Fam. Nov. and 8 No
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Genomic and phylogenomic insights into the family Streptomycetaceae 2 lead to proposal of Charcoactinosporaceae fam. nov. and 8 novel genera 3 with emended descriptions of Streptomyces calvus 4 Munusamy Madhaiyan1, †, * Venkatakrishnan Sivaraj Saravanan2, † Wah-Seng See-Too3, † 5 1Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 6 Singapore 117604; 2Department of Microbiology, Indira Gandhi College of Arts and Science, 7 Kathirkamam 605009, Pondicherry, India; 3Division of Genetics and Molecular Biology, 8 Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, 9 Malaysia 10 *Corresponding author: Temasek Life Sciences Laboratory, 1 Research Link, National 11 University of Singapore, Singapore 117604; E-mail: [email protected] 12 †All these authors have contributed equally to this work 13 Abstract 14 Streptomycetaceae is one of the oldest families within phylum Actinobacteria and it is large and 15 diverse in terms of number of described taxa. The members of the family are known for their 16 ability to produce medically important secondary metabolites and antibiotics. In this study, 17 strains showing low 16S rRNA gene similarity (<97.3 %) with other members of 18 Streptomycetaceae were identified and subjected to phylogenomic analysis using 33 orthologous 19 gene clusters (OGC) for accurate taxonomic reassignment resulted in identification of eight 20 distinct and deeply branching clades, further average amino acid identity (AAI) analysis showed 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.08.193797; this version posted July 8, 2020. -
Cultivation-Based Quantification and Identification of Bacteria at Two
microorganisms Communication Cultivation-Based Quantification and Identification of Bacteria at Two Hygienic Key Sides of Domestic Washing Machines Susanne Jacksch 1,2 , Huzefa Zohra 1, Mirko Weide 3, Sylvia Schnell 2 and Markus Egert 1,* 1 Faculty of Medical and Life Sciences, Institute of Precision Medicine, Microbiology and Hygiene Group, Furtwangen University, 78054 Villingen-Schwenningen, Germany; [email protected] (S.J.); [email protected] (H.Z.) 2 Research Centre for BioSystems, Land Use, and Nutrition (IFZ), Institute of Applied Microbiology, Justus-Liebig-University Giessen, 35392 Giessen, Germany; [email protected] 3 International Research & Development–Laundry & Home Care, Henkel AG & Co. KGaA, 40191 Düsseldorf, Germany; [email protected] * Correspondence: [email protected]; Tel.: +49-(7720)-307-4554; Fax: +49-(7720)-307-4207 Abstract: Detergent drawer and door seal represent important sites for microbial life in domes- tic washing machines. Interestingly, quantitative data on the microbial contamination of these sites is scarce. Here, 10 domestic washing machines were swab-sampled for subsequent bacte- rial cultivation at four different sampling sites: detergent drawer and detergent drawer chamber, as well as the top and bottom part of the rubber door seal. The average bacterial load over all washing machines and sites was 2.1 ± 1.0 × 104 CFU cm−2 (average number of colony forming units ± standard error of the mean (SEM)). The top part of the door seal showed the lowest contami- 1 −2 nation (11.1 ± 9.2 × 10 CFU cm ), probably due to less humidity. Out of 212 isolates, 178 (84%) were identified on the genus level, and 118 (56%) on the species level using matrix-assisted laser Citation: Jacksch, S.; Zohra, H.; desorption/ionization (MALDI) Biotyping, resulting in 29 genera and 40 identified species across all Weide, M.; Schnell, S.; Egert, M. -
Inter-Domain Horizontal Gene Transfer of Nickel-Binding Superoxide Dismutase 2 Kevin M
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.12.426412; this version posted January 13, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Inter-domain Horizontal Gene Transfer of Nickel-binding Superoxide Dismutase 2 Kevin M. Sutherland1,*, Lewis M. Ward1, Chloé-Rose Colombero1, David T. Johnston1 3 4 1Department of Earth and Planetary Science, Harvard University, Cambridge, MA 02138 5 *Correspondence to KMS: [email protected] 6 7 Abstract 8 The ability of aerobic microorganisms to regulate internal and external concentrations of the 9 reactive oxygen species (ROS) superoxide directly influences the health and viability of cells. 10 Superoxide dismutases (SODs) are the primary regulatory enzymes that are used by 11 microorganisms to degrade superoxide. SOD is not one, but three separate, non-homologous 12 enzymes that perform the same function. Thus, the evolutionary history of genes encoding for 13 different SOD enzymes is one of convergent evolution, which reflects environmental selection 14 brought about by an oxygenated atmosphere, changes in metal availability, and opportunistic 15 horizontal gene transfer (HGT). In this study we examine the phylogenetic history of the protein 16 sequence encoding for the nickel-binding metalloform of the SOD enzyme (SodN). A comparison 17 of organismal and SodN protein phylogenetic trees reveals several instances of HGT, including 18 multiple inter-domain transfers of the sodN gene from the bacterial domain to the archaeal domain. -
TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl Für Mikrobielle Ökologie Analyse Der Bakteriellen Biodiversität Von Boviner Rohmil
TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl für Mikrobielle Ökologie Analyse der bakteriellen Biodiversität von boviner Rohmilch mittels kultureller und kulturunabhängiger Verfahren Franziska Thekla Breitenwieser Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzender: Prof. Dr. Ulrich Kulozik Prüfer der Dissertation: 1. Prof. Dr. Siegfried Scherer 2. Prof. Dr. Rudi F. Vogel Die Dissertation wurde am 23.03.2018 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 04.07.2018 angenommen. Inhaltsverzeichnis INHALTSVERZEICHNIS INHALTSVERZEICHNIS ..................................................................................................... I ZUSAMMENFASSUNG ...................................................................................................... V SUMMARY ....................................................................................................................... VII ABBILDUNGSVERZEICHNIS ......................................................................................... IX TABELLENVERZEICHNIS .............................................................................................. XI ABKÜRZUNGSVERZEICHNIS ..................................................................................... XIII 1. -
Systematic Research on Actinomycetes Selected According
Systematic Research on Actinomycetes Selected according to Biological Activities Dissertation Submitted in fulfillment of the requirements for the award of the Doctor (Ph.D.) degree of the Math.-Nat. Fakultät of the Christian-Albrechts-Universität in Kiel By MSci. - Biol. Yi Jiang Leibniz-Institut für Meereswissenschaften, IFM-GEOMAR, Marine Mikrobiologie, Düsternbrooker Weg 20, D-24105 Kiel, Germany Supervised by Prof. Dr. Johannes F. Imhoff Kiel 2009 Referent: Prof. Dr. Johannes F. Imhoff Korreferent: ______________________ Tag der mündlichen Prüfung: Kiel, ____________ Zum Druck genehmigt: Kiel, _____________ Summary Content Chapter 1 Introduction 1 Chapter 2 Habitats, Isolation and Identification 24 Chapter 3 Streptomyces hainanensis sp. nov., a new member of the genus Streptomyces 38 Chapter 4 Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae 52 Chapter 5 A new member of the family Micromonosporaceae, Planosporangium flavogriseum gen nov., sp. nov. 67 Chapter 6 Promicromonospora flava sp. nov., isolated from sediment of the Baltic Sea 87 Chapter 7 Discussion 99 Appendix a Resume, Publication list and Patent 115 Appendix b Medium list 122 Appendix c Abbreviations 126 Appendix d Poster (2007 VAAM, Germany) 127 Appendix e List of research strains 128 Acknowledgements 134 Erklärung 136 Summary Actinomycetes (Actinobacteria) are the group of bacteria producing most of the bioactive metabolites. Approx. 100 out of 150 antibiotics used in human therapy and agriculture are produced by actinomycetes. Finding novel leader compounds from actinomycetes is still one of the promising approaches to develop new pharmaceuticals. The aim of this study was to find new species and genera of actinomycetes as the basis for the discovery of new leader compounds for pharmaceuticals. -
Deanship of Graduate Studies Al-Quds University Phylogenetic
Deanship of Graduate Studies Al-Quds University Phylogenetic Typing of Streptomyces Species Using Multilocus PCR Analysis Mohammad Ahmad Al-Qadi M.Sc. Thesis Jerusalem-Palestine 1434Hijri/2013 Phylogenetic Typing of Streptomyces Species Using Multilocus PCR Analysis Prepared By: Mohammad Ahmad Al-Qadi B.Sc. Arab American University, Palestine Supervisor: Dr. Sameer A. Barghouthi A thesis submitted in partial fulfillment of requirements for the degree of Master of Medical Laboratory Sciences / Microbiology and Immunology Track, Department of Medical Laboratory Sciences, Faculty of Health Professions, Al-Quds University. 1434Hijri/2013 Al-Quds University Deanship of Graduate Studies Department of Medical Laboratory Sciences Thesis Approval Phylogenetic Typing of Streptomyces Species Using Multilocus PCR Analysis Prepared By: Mohammad Ahmad Al-Qadi Registration No. 20913084 Supervisor: Dr. Sameer A. Barghouthi Master Thesis submitted and accepted, Date: 06/01/2013 The names and signatures of the examining committee members are as follows: 1- Head of committee: Dr. Sameer A. Barghouthi 2- Internal Examiner: Dr. Ibrahim Abbasi 3- External Examiner: Dr. Walid Basha Jerusalem-Palestine 1434/2013 Dedication: I dedicate my work to those dearest to me, my dear mother who faced a great deal of time and difficulties for the sake of my success and wellbeing, my kind father whose advice have guided my path through difficult times, my lovely sisters who supported my efforts, my late brother with whom I had the best companionship, my supportive uncle Ali who helped me in my duties, my loving wife whose affection and efforts made this possible. Mohammad Ahmad Al-Qadi Declaration I certify that this thesis submitted for the degree of master, is the result of my own research, except where otherwise acknowledged, and that this study (or any part of the same) has not been submitted for a higher degree to any other university or institution. -
Diversity and Geographic Distribution of Soil Streptomycetes With
Hamid et al. BMC Microbiology (2020) 20:33 https://doi.org/10.1186/s12866-020-1717-y RESEARCH ARTICLE Open Access Diversity and geographic distribution of soil streptomycetes with antagonistic potential against actinomycetoma-causing Streptomyces sudanensis in Sudan and South Sudan Mohamed E. Hamid1,2,3, Thomas Reitz1,4, Martin R. P. Joseph2, Kerstin Hommel1, Adil Mahgoub3, Mogahid M. Elhassan5, François Buscot1,4 and Mika Tarkka1,4* Abstract Background: Production of antibiotics to inhibit competitors affects soil microbial community composition and contributes to disease suppression. In this work, we characterized whether Streptomyces bacteria, prolific antibiotics producers, inhibit a soil borne human pathogenic microorganism, Streptomyces sudanensis. S. sudanensis represents the major causal agent of actinomycetoma – a largely under-studied and dreadful subcutaneous disease of humans in the tropics and subtropics. The objective of this study was to evaluate the in vitro S. sudanensis inhibitory potential of soil streptomycetes isolated from different sites in Sudan, including areas with frequent (mycetoma belt) and rare actinomycetoma cases of illness. Results: Using selective media, 173 Streptomyces isolates were recovered from 17 sites representing three ecoregions and different vegetation and ecological subdivisions in Sudan. In total, 115 strains of the 173 (66.5%) displayed antagonism against S. sudanensis with different levels of inhibition. Strains isolated from the South Saharan steppe and woodlands ecoregion (Northern Sudan) exhibited higher inhibitory potential than those strains isolated from the East Sudanian savanna ecoregion located in the south and southeastern Sudan, or the strains isolated from the Sahelian Acacia savanna ecoregion located in central and western Sudan. According to 16S rRNA gene sequence analysis, isolates were predominantly related to Streptomyces werraensis, S.