Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_000067205Cyc: Bordetella petrii DSM 12804 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari an amino an amino an amino an amino an amino an amino an amino an amino an amino acid acid acid acid acid acid acid acid acid molybdate glutathione phosphate phosphate spermidine an amino an amino an amino molybdate molybdate ammonium benzoate benzoate phosphate phosphate phosphate phosphate putrescine acid acid acid predicted predicted predicted predicted predicted predicted predicted predicted predicted predicted predicted predicted ABC ABC ABC ABC ABC ABC ABC ABC ABC ABC ABC ABC RS20125 RS15820 RS18345 RS17890 RS26835 transporter transporter transporter transporter transporter RS24045 RS09900 RS09515 transporter RS03665 RS13385 transporter RS07010 RS20170 transporter transporter transporter transporter RS24670 RS24550 transporter of an of an of an of an of an of molybdate of glutathione of an of an of an of an of phosphate amino acid amino acid amino acid amino acid amino acid amino acid amino acid amino acid amino acid spermidine phosphate molybdate molybdate ammonium benzoate benzoate an amino an amino phosphate phosphate phosphate phosphate an amino putrescine acid acid acid glutathione molybdate an amino an amino an amino an amino phosphate an amino an amino an amino an amino an amino acid acid acid acid acid acid acid acid acid

Amino Acid Degradation Hormone Biosynthesis Aminoacyl-tRNA Charging gln Macromolecule Modification tRNA-uridine 2-thiolation glutaminyl-tRNA Carbohydrate Degradation 6 γ N -(3-methylbut- a mature peptidoglycan UDP-N-acetyl-α-D- a [DNA]-3'- a 5'-phospho- UDP-N-acetyl- L-alanyl-γ-D- L-alanyl- -D- UDP-N-acetyl- a [protein]-L- a [protein]-L- a [protein]-L- biosynthesis via transamidation and selenation (bacteria) + L(or D)-O- an L-glutamyl- an L-asparaginyl- L-valine degradation I a sulfurated NAD meso- α glutamyl-meso- α a lipid II glutamate-O 5 N-acetyl- Polyprenyl Biosynthesis 2-en-1-yl)- (meso-diaminopimelate muramoyl-L-alanyl- hydroxyl -D-muramoyl-L- glutamyl-meso-2,6- UDP-N-acetyl- -D-muramoyl- Gln β-isoaspartate glu ala Asn methionine indole-3-acetate Amine and Polyamine Biosynthesis L-isoleucine degradation I L-leucine degradation I L-tyrosine degradation I L-tryptophan degradation to L-histidine degradation I [sulfur carrier] [DNA] diaminopimelate phosphoserine [tRNA ] L-citrulline [tRNA ] glycogen degradation II adenosine 37 containing) γ-D-glutamyl-meso- UDP-N-acetyl- diaminopimelate α γ protein-L- -methyl-ester peptide- biosynthesis 2-amino-3-carboxymuconate D-alanyl-D-alanine alanyl-D-glutamate diaminopimeloyl- -D-muramate L-alanyl- -D- bifunctional Asp-tRNA(Asn) glu cys in tRNA 2,6-diaminopimelate α-D-muramate isoaspartate O- methionine di-trans,poly-cis IV (bacteria) val semialdehyde D-alanine glutamyl-meso-2,6- penicillin- phosphoserine /Glu-tRNA(Gln) ectoine biosynthesis DNA methyltransferase: (S)-S-oxide octaprenyl (indole-3-yl) spermidine putrescine ile leu tyr his a glycogen lytic murein UDP-N- diaminopimeloyl- binding phosphatase/ chemotaxis glutamate-- acetylornithine -undecaprenyl IscS subfamily tRNA (N6-isopentenyl ligase bifunctional UDP- amidotransferase aminoacyl- diphosphate biosynthesis I biosynthesis III aspartate/ trp D-alanyl-D-alanine BPET_RS02445 cysteine ligase: deacetylase: reductase phosphate biosynthesis acetonitrilenitrile cysteine branched-chain branched-chain transglycosylase: bifunctional UDP- D: ligD N-acetylmuramoyl- UDP-N- acetylmuramate:L- protein homoserine GatCAB subunit A: response tRNA biosynthesis asp tyrosine/aromatic tryptophan 2,3- adenosine(37)-C2)- protein-L- BPET_RS01975 argE MsrA: msrA (2E,6E)-farnesyl desulfurase: amino acid branched-chain amino acid BPET_RS09485 N-acetylmuramoyl- L-alanyl-D- acetylmuramate:L- alanyl-gamma-D- 2: mrdA phosphotransferase BPET_RS07165 regulator protein- hydrolase: IPP hydratase: aminotransferase: methylthiotransferase NAD- diphosphate (2E,6E)-farnesyl SAM arg transaminase: amino acid transaminase: dioxygenase: urocanate [+ 5 isozymes] L-alanyl-D- glutamate--2, 6- alanyl-gamma-D- glutamyl- meso- penicillin- ThrH: thrH isoaspartate(D- glutamate glutamate-- acetylornithine arfB peptide- an L-glutamyl- IPP (indol-3-yl)nthB nthA aspartate kinase: BPET_RS14065 3-(4- BPET_RS14085 MiaB: miaB dependent D-alanyl-D-alanine Asp-tRNA(Asn) Gln diphosphate an [L-cysteine transaminase: BPET_RS04645 kynA α glutamyl- meso- diaminopimelate aspartate) O- methylesterase: cysteine ligase: deacetylase: methionine [tRNA ] BPET_RS17500 arginase: BPET_RS04645 hydroxyphenyl) N-Formyl-L- an -limit dextrin glutamate--2, 6- DNA ligase diaminopimelate binding carboxypeptidase/ phosphoserine /Glu-tRNA(Gln) aminoacyl- acetamide desulfurase]-S- BPET_RS04645 succinate diaminopimelate ligase: mpl methyltransferase: BPET_RS10685 BPET_RS23825 argE (S)-S-oxide di-trans,poly-cis- L-aspartyl- rocF branched-chain branched-chain pyruvate kynurenine a mature peptidoglycan a mature peptidoglycan diaminopimelate LigA: ligA ligase MurE/UDP- protein D-alanyl-D-alanine- phosphatase amidotransferase: tRNA Asp-tRNA(Asn) amidase: sulfanyl-L-cysteine 4-alpha- dehydrogenase, ligase: mpl BPET_RS12875 reductase decaprenylcistransferase: octaprenyl- 4-phosphate L-ornithine amino acid branched-chain amino acid arylformamidase: L-proline degradation I with (L-alanyl-γ-D- strand (non- ligase MurE/UDP- N-acetylmuramoyl- 2: mrdA endopeptidase: dacB SerB: serB gatB gatA gatC a protein L-β- hydrolase: /Glu-tRNA(Gln) diphosphate BPET_RS11310 4-hydroxyphenylpyruvate glucanotransferase: hydrophobic an L-glutaminyl- MsrA: msrA gln uppS aminotransferase: amino acid aminotransferase: kynB 4-imidazolone- glutamyl-meso-2,6- reducing terminus) N-acetylmuramoyl- tripeptide--D- UDP-N-acetyl- D-alanyl-D-alanine serine isoaspartate a [protein]-α- γ pth a protein-L- amidotransferase [+ 6 isozymes] aspartate- dioxygenase: hppD malQ membrane anchor Gln MeOH -L-glutamyl- synthase: putrescine dAdoMet aminotransferase: BPET_RS08740 5-propanoate diaminopimeloyl-D- tripeptide--D- [DNA] NMN alanyl-D-alanine UDP-N-acetylmuramoyl- α-D-muramoyl- carboxypeptidase/ [tRNA ] α-methyl ester L-glutamate acetate L-citrulline GatCAB subunit A: semialdehyde arginine/lysine/ BPET_RS08740 4-methyl-2- a debranched protein: sdhD a N- D-alanine methionine- di-trans,octa-cis BPET_RS21420 a [TusA sulfur- BPET_RS08740 pro alanine) tetrapeptide alanyl-D-alanine AMP ligase MurF: murF L-alanyl-γ-D- L-alanyl-γ-D- D-alanyl-D-alanine- Asp-tRNA(Asn) BPET_RS07165 (indol-3-yl)acetate dehydrogenase: ornithine 3-methyl-2- oxopentanoate homogentisate L-kynurenine α-limit dextrin D-ala acetylglucosamine- (S)-S-oxide -undecaprenyl 6 ligase MurF: murF glutamyl-meso-2,6- Asn /Glu-tRNA(Gln) octaprenyl spermidine decarboxylase: carrier protein]-S- oxobutanoate (3S)-3-methyl-2- trifunctional N -(3-methylbut- glutamyl-meso-2,6- endopeptidase: dacB -N-acetylmuramyl- asn tRNA Asp-tRNA(Asn) diphosphate asd homogentisate an unsulfurated diaminopimelate amidotransferase diphosphate synthase: BPET_RS20755 sulfanyl-L-cysteine oxopentanoate transcriptional 5'-deoxyadenosine 2-en-1-yl)-2- met UDP-N-acetyl- diaminopimeloyl- (tetrapeptide) /Glu-tRNA(Gln) undecaprenyl- L-aspartate 4- 1,2-dioxygenase: [sulfur carrier] GatCAB subunit A: synthase: BPET_RS16275 regulator/proline N-formimino- (methylsulfanyl) UDP-N-acetyl-α-D- α-D-muramoyl- D-alanine UDP-N- pyrophosphoryl- amidotransferase: diphosphate semialdehyde putrescine 3-methylbutanoyl- 37 BPET_RS07165 BPET_RS23660 BPET_RS20390 dehydrogenase/L- L-glutamate α adenosine L-alanyl-γ-D- undecaprenol gatB gatA gatC phosphatase: spermidine -D- muramoyl-L-alanyl- D-ala acetylmuramoyl- diaminobutyrate- CoA 4-maleyl- 3-hydroxy- glutamate gamma- D-glucopyranose in tRNA γ γ [+ 8 isozymes] a 5-phosphooxy- synthase: a [TusD sulfur- isobutanoyl-CoA (2S)-2- formimidoylglutamase: glucopyranose -D-glutamyl-meso- glutamyl-meso-2,6- L-alanyl- -D- BPET_RS17540 all-trans- -2-oxoglutarate isovaleryl-CoA acetoacetate L-kynurenine semialdehyde L-glutamyl- di-trans,octa-cis BPET_RS16615 carrier protein]-S- methylbutanoyl- BPET_RS12605 1-phosphate 2,6-diaminopimeloyl- diaminopimelate glutamyl-meso-2,6- ammonium octaprenyl transaminase: ectB dehydrogenase: dehydrogenase: Gln -undecaprenyl sulfanyl-L-cysteine CoA maleylacetoacetate D-alanyl-D-alanine diaminopimeloyl- [tRNA ] diphosphate kynureninase: phosphate L-2,4- BPET_RS00295 isomerase: maiA (S)-1-pyrroline-putA phosphomannomutase/ D-alanine spermidine kynU glu Asp-tRNA(Asn) diaminobutanoate isovaleryl-CoA maleylacetoacetate 5-carboxylate phosphoglucomutase: methylacrylyl-CoA dehydrogenase: BPET_RS20415 /Glu-tRNA(Gln) a [TusE sulfur isomerase: maiA 3-hydroxyanthranilate an O 4 - α α diaminobutyrate (E)-2- ditrans,octacis- a peptidoglycan with a single a peptidoglycan dimer (meso a [protein]- ditrans,octacis- Nα,Nε-diacetyl-lysyl- a [bis(guanylyl a 6-(N-acetyl- - queuosine at N-acetyl- - 4-methyl-3- amidotransferase BPET_RS09935 4-fumaryl- NADPH NAD + an L-aspartyl- N-formyl- an L-cysteinyl- acetyltransferase: cadaverine 34 carrier protein]-S methylcrotonoyl- undecaprenyldiphospho- (L-alanyl-γ-D-glutamyl- -diaminopimelate containing) methylthymine undecaprenyldiphospho- molybdopterin) cys a type IV prepilin D-glucosaminyl)- glu position 34 met D-muramoyl- oxoadipate- a uridine in tRNA enoyl-CoA D-glucopyranose stranded DNA L-cysteine D-alanyl-D-alanine [tRNA Asn ] [tRNA Cys ] GatCAB subunit A: 3-methylcrotonyl- acetoacetate L-glutamate Asp ectA biosynthesis -sulfanylcysteine hydratase: CoA 6-phosphate N-acetyl-(N-acetyl-β-D- L-lysyl-D-alanyl-D- in DNA N-acetyl-(N- cofactor 1-phosphatidyl- of a tRNA bifunctional L-alanine(1-) enol-lactone BPET_RS07165 CoA L-glutamate-5- Asp-tRNA(Asn) 3-oxoadipate (2S)-4-acetamido- BPET_RS01660 enoyl-CoA fumarylacetoacetase: L-citrulline degradation glucosaminyl)muramoyl- alanine) pentapeptide acetylglucosaminyl) chaperone]- 1D-myo-inositol glutamate N- semialdehyde exodeoxyribonuclease penicillin-binding penicillin- /Glu-tRNA(Gln) enol- Asp-tRNA(Asn) lys tRNA 2- hydratase: methylcrotonoyl- fahA 2-amino-3- L-alanyl-γ-D-glutamyl-L- methylated-DNA-- muramoyl-L-alanyl-γ- L-cysteine NAD(P)(+) 2-aminobutanoate [+ 3 isozymes] protein 2: mrdA binding prepilin amidotransferase N-formylglutamate tRNA glutamyl- acetyltransferase/ 1,6-anhydro-N- aminoacyl- lactonase: lys RS06755 lys /Glu-tRNA(Gln) thiouridine(34) BPET_RS01660 CoA carboxylase: carboxymuconate- lysyl-D-alanyl-D-alanine VII large subunit: [protein]-cysteine S- D-isoglutaminyl-N-(β- transhydrogenase ectoine arginine/lysine/ (S)-3-hydroxy- trifunctional D-alanyl-D-alanine protein peptidase: GatCAB subunit A: GlcNAc-PI de- amidohydrolase: Q(34) synthetase amino-acid acetylmuramyl- tRNA pcaD amidotransferase: synthase [+ 3 isozymes] BPET_RS05850 fumarate 6-semialdehyde L-citrulline Aldehyde Degradation BPET_RS13490 methyltransferase: D-asparaginyl)-L-lysyl- (Re/Si-specific): synthase: ornithine isobutanoyl-CoA transcriptional carboxypeptidase/ 2: mrdA IscS subfamily BPET_RS17160 BPET_RS07165 N-acetylase: BPET_RS13825 GluQRS: acetyltransferase L-alanine hydrolase: MnmA: mnmA (2S,3S)-3- [+ 2 isozymes] ornithine exodeoxyribonuclease BPET_RS02205 D-alanyl-D-alanine BPET_RS13830 3-oxoadipate gatB gatA gatC ectC decarboxylase: regulator/proline monofunctional cysteine prepilin BPET_RS02660 N-formylglutamate BPET_RS00185 ArgJ: argJ amidase arfB 3-hydroxyisobutyryl- hydroxy-2- carbamoyltransferase: VII small subunit: D-alanyl-D-alanine- D-alanyl-D-alanine BPET_RS13835 Asp-tRNA(Asn) enol- predicted BPET_RS20755 3-methylglutaconyl- dehydrogenase/L- methylglyoxal degradation I biosynthetic methylated-DNA-- desulfurase: peptidase: deformylase: hutG AmpD: ampD a 2-thiouridine 34 CoA hydrolase: methylbutanoyl- argF BPET_RS15505 endopeptidase: dacB carboxypeptidase/ BPET_RS13840 /Glu-tRNA(Gln) amino-acid N- aminoacyl- lactonase: ABC an L-glutaminyl- ectoine cadaverine CoA glutamate gamma- carbamoyl [protein]-cysteine S- BPET_RS14065 BPET_RS02670 α ectoine ectoine in tRNA BPET_RS12685 CoA L-serine degradation peptidoglycan monofunctional amidotransferase: 6-( -D- glutamyl- acetyltransferase: tRNA pcaD transporter [tRNA Gln ] semialdehyde phosphate methyltransferase: D-alanyl-D-alanine- Re/Si-specific acetate 4-methyl-3- (S)-3-hydroxy- methylglyoxal transglycosylase: a peptidoglycan with biosynthetic gatB gatA gatC glucosaminyl)- queuosine at argA N-acetyl-D- hydrolase: of ectoine tRNA uridine-5- dehydrogenase: a single-stranded BPET_RS23530 endopeptidase: dacB NAD(P)(+) an L-asparaginyl- formate N-acetyl-L- oxoadipate isobutanoate glutamine- lactoylglutathione mtgA a ribonucleoside D,D cross-links (meso- peptidoglycan a [bis(guanylyl 1-phosphatidyl- glu position 34 ala muramate pth carboxymethylaminomethyl(34) D-ala transhydrogenase Asn putA oligodeoxyribonucleotide a cleaved type [tRNA ] Asp methionine tRNA charging 3-hydroxyisobutyrate ser hydrolyzing lyase: gloA 5'-monophosphate diaminopimelate containing) transglycosylase: ala molybdopterin) a peptide 1D-myo-inositol of a tRNA biotin RS08715 biotin synthesis enzyme MnmG: mnmG α ε subunit alpha: IV prepilin 2-methylacetoacetyl- HMG-CoA threonine/serine carbamoyl- a peptidoglycan with di-trans,octa-cis a [protein]-S- mtgA N ,N -diacetyl- cofactor tRNA uridine-5- dehydrogenase: glu glyoxalase/bleomycin a thymine in DNA D-ala BPET_RS21170 CoA dehydratase: (L-alanyl-γ-D-glutamyl- -undecaprenyl methyl-L-cysteine lysyl-D-alanine chaperone]-S- Cys carboxymethylaminomethyl(34) mmsB hydroxymethylglutaryl- phosphate resistance/dioxygenase cys a tRNA gln Gln a tRNA Ala ala sulfanyl-L-cysteine a tRNA (S)-methylmalonate- CoA lyase: BPET_RS24720 synthase: family protein: L-lysyl-D-alanyl-D- diphosphate a peptidoglycan di-trans,octa-cis Arg glu Tyr Pro Trp Val Leu Cys Met Met Phe Gly synthesis GTPase MnmE: mnmE arg a tRNA glu a tRNA tyr a tRNA pro a tRNA trp a tRNA val a tRNA leu a tRNA cys a tRNA elongator tRNA met initiator tRNA met phe a tRNA gly a tRNA acetyl-CoA C- carB carA alanine) pentapeptide -undecaprenyl + predicted ser His Lys Ile Thr asp Asn semialdehyde BPET_RS14095 L-serine BPET_RS20765 dimer (E. faeciums) NADH NADP ser a tRNA his a tRNA lys a tRNA ile a tRNA thr a tRNA tRNA asp asn tRNA a 5-carboxymethylaminomethyl- acyltransferase: ABC efflux ammonia-lyase: (R)-S-lactoylglutathione diphosphate glutamine--tRNA ligase/ alanyl-tRNA synthetase: 2-thiouridine 34 in tRNA BPET_RS00285 [+ 3 isozymes] carbamate thiol transporter thiol methylmalonate- 2-aminoprop-BPET_RS15815 arginine--tRNA ligase: glutamate--tRNA tyrosine--tRNA ligase: proline--tRNA ligase: YqeY domain fusion BPET_RS06790 tryptophan--tRNA valine--tRNA ligase: leucine--tRNA ligase: cysteine--tRNA ligase: methionine--tRNA methionine--tRNA phenylalanine--tRNA ligase: glycine--tRNA ligase: [+ 2 isozymes] L-methionine degradation hydroxyacylglutathione of a thiol semialdehyde acetoacetate an O 6 - BPET_RS00345 ligase: BPET_RS02950 BPET_RS03060 BPET_RS03325 protein: BPET_RS04515 alanine--tRNA ligase: alaS serine--tRNA ligase: serS ligase: BPET_RS09350 BPET_RS10225 histidine--tRNA ligase: hisS lysine--tRNA ligase: lysS isoleucine--tRNA ligase: ileS threonine--tRNA ligase: thrS BPET_RS16845 BPET_RS17520 ligase: metG ligase: metG aspartate--tRNA ligase: aspS BPET_RS13350 pheS BPET_RS03930 glyQ 2-enoate I (to L-homocysteine) an inactive a peptidoglycan a [protein]- ditrans,octacis- a peptidoglycan a [protein]- a [protein] N- phosphoenol (S)-1-pyrroline- group hydrolase: gloB a reduced a peptidoglycan FAD a [glutamine- MoO - carbonic acid an L-cysteinyl- L-canavanine dehydrogenase: ribonucleoside SAM dimer (E. faeciums) methylguanine undecaprenyldiphospho- dimer (S. aureus) terminal-formyl- 2 ala UDP-N-acetyl- (S)-3-amino-2- L-cysteine L-threonine ATP ATP dGDP pyruvate 5-carboxylate ATP [tRNA Pro ] 2+ 2+ BPET_RS09025 L-tryptophan flavodoxin in DNA synthetase]- molybdopterin Co Co a 5-aminomethyl-2- acetyl-CoA propanoyl-CoA met (R)-lactate triphosphate N-acetyl-(N- L-methionine trifunctional α-D-muramate biotin 2+ RS24235 2+ 34 methylpropanoate L-tyrosine cofactor Ni Ni an L-arginyl-[tRNA Arg ] an L-glutamyl-[tRNA Glu ] an L-tyrosyl-[tRNA Tyr ] an L-prolyl-[tRNA Pro ] an L-glutaminyl-[tRNA Gln ] an L-alanyl-[tRNA Ala ] an L-seryl-[tRNA ser ] an L-tryptophanyl-[tRNA Trp ] an L-valyl-[tRNA Val ] an L-histidyl-[tRNA His ] an L-lysyl-[tRNA Lys ] an L-isoleucyl-[tRNA Ile ] an L-threonyl-[tRNA Thr ] an L-leucyl-[tRNA Leu ] an L-cysteinyl-[tRNA Cys ] an L-methionyl-[elongator tRNA Met ] an L-methionyl-[initiator tRNA Met ] an L-aspartyl-[tRNA asp ] an L-phenylalanyl-[tRNA Phe ] a glycyl-[tRNA Gly ] an L-asparaginyl-[tRNA Asn ] thiouridine in tRNA degradation I CO reductase acetylglucosaminyl) transcriptional methionine 2 1,6-anhydro-N- penicillin-binding penicillin- (via anthranilate) FAD:protein FMN regulator/proline carbonic arginase: 5-methylaminomethyl- hydrogencarbonate 2-iminopropanoate adenosyltransferase: acetylmuramyl- protein 2: mrdA bifunctional muramoyl-L-alanyl- binding peptide UDP-N- Cys- Degradation/ γ transferase: molybdenum cofactor dehydrogenase/L- anhydrase: rocF 2-thiouridine-forming BPET_RS24200 anaerobic L-alanine DNA-binding -D-isoglutaminyl- protein bifunctional [glutamate- deformylase: pyruvate acetylmuramate-- biotin--[acetyl- tRNA(Pro) trp Utilization/ D-alanyl-D-alanine β BPET_RS16090 guanylyltransferase glutamate gamma- BPET_RS25280 lipid A RS15765 lipid A methyltransferase: SAM ribonucleoside- amidase transcriptional N-( -D-asparaginyl) 2: mrdA -ammonia ligase]- BPET_RS03890 kinase: pyk L-alanine ligase: CoA-carboxylase] deacylase: L-arginine degradation tryptophan 2,3- Assimilation - Other carboxypeptidase/ FAD:protein FMN MobA: mobA semialdehyde carbonic mnmD L-glutamine pyruvate triphosphate AmpD: ampD regulator/O6- -L-lysyl-D-alanine adenylyl-L-tyrosine peptide BPET_RS03520 ligase: ybaK VII (arginase 3 pathway) dioxygenase: L-asparagine acrylonitrile D-alanyl-D-alanine- D-alanyl-D-alanine transferase: anhydrase: Cofactor, Carrier, and Vitamin Biosynthesis degradation II reductase methylguanine-DNA phosphorylase/ dehydrogenase: BPET_RS24340 urea a 5-methylaminomethyl- kynA degradation I endopeptidase: dacB carboxypeptidase/ deformylase: L-canaline gln RS12620 gln 34 N-Formyl-L- pyruvate degradation I BPET_RS22055 adenylyl putA BPET_RS22995 a cyclic a cyclic 2-thiouridine in tRNA L-glutamine activating protein: methyltransferase [glutamate-- BPET_RS23935 RS21360 arg ditrans,octacis- a peptidoglycan monofunctional D-alanyl-D-alanine- pyruvate UDP-N-acetyl- kynurenine Ada: ada ammonia-ligase] molybdenum Pro peptide peptide [2Fe-2S] iron-sulfur tRNA 2- degradation I gln BPET_RS15645 undecaprenyldiphospho- biosynthetic dGTP α-D-muramoyl- biotinyl-5'- cys a tRNA ubiquinol-8 biosynthesis glutathione-peroxide glutathione- superpathway of thiamine diphosphate biosynthesis I lipoate biosynthesis asn acrylonitrile pentapeptide a peptidoglycan tetramer endopeptidase: dacB cofactor glu superpathway of tetrahydrofolate biosynthesis dipyrromethane thiamine diphosphate salvage II glutamate arylformamidase: SAH [+ 2 isozymes] a [protein]-FMN- adenylyltransferase: adenylate cluster biosynthesis (early decarboxylation) redox reactions glutaredoxin and incorporation I selenouridine(34) nitrile N-acetyl-(N- with a D,D cross-link D-ala peptidoglycan L-alanine CO H O cofactor biosynthesis L-threonine glnE an N-terminal L- 2 2 predicted synthase gln synthase kynB asparaginase: hydratase: an active acetylglucosaminyl)muramate transglycosylase: AMP formate all-trans- redox reactions 4-amino-2-methyl-5- Secondary Metabolite Biosynthesis arginase: rocF (Enterococcus faecium) a peptidoglycan methionyl-[protein] ABC an anion an apo-[hydroxymethylbilane cys MnmH: mnmH Asp-tRNA(Asn) subunit alpha: L-aspartate adenosylhomocysteinase: BPET_RS25170 5'-deoxyadenosine a flavodoxin met ribonucleoside a [protein]-S- mtgA gln gln an anion RS22825 L-cysteine desulfurase octaprenyl GSSG pyrimidinemethanol an octanoyl-[acp] nthB nthA a guanine in DNA with D,D cross- D-ala transporter 4-hydroxybenzoate GTP synthase]-L-cysteine glutathione a 5-methylaminomethyl- BPET_RS00765 L-kynurenine asp semiquinone methyl-L-cysteine a [glutamine /Glu-tRNA(Gln) degradation I BPET_RS24115 acrylamide triphosphate link (S. aureus) of L-glutamine diphosphate bifunctional lipoyl(octanoyl) methylerythritol phosphate pathway I 2-(S-geranyl) urea glu synthetase]-O IscS subfamily IscS subfamily epoxysqualene amidotransferase L-ornithine reductase a peptidoglycan di-trans,octa-cis hydroxymethylpyrimidine transferase myo-inositol thiouridine 34 in tRNA amidase: 4 -(5'-adenylyl) cysteine GTP cysteine GatCAB subunit A: kynureninase: -undecaprenyl + + fluoride RS16060 fluoride 4-hydroxybenzoate glutathione- a [hydroxymethylbilane LipB: lipB biosynthesis asp L-homocysteine dimer (E. faecium H RS13495 H cyclohydrolase a reduced desulfurase: kinase/ a [lipoyl-carrier protein] D-glyceraldehyde biosynthesis tRNA 2- BPET_RS07165 BPET_RS11310 -L-tyrosine desulfurase: octaprenyltransferase: disulfide synthase] ES intermediate pyruvate ornithine kynU aspartate/ , tetrapeptide) diphosphate 2 glutaredoxin phosphomethylpyrimidine 6 3-phosphate selenouridine(34) [+ 6 isozymes] BPET_RS14065 ubiA I FolE2: BPET_RS14065 N -octanoyl-L-lysine (2E,6E)-farnesyl D-glucopyranose [+ 8 isozymes] cyclodeaminase: reductase: gorA hydroxymethylbilane an [L-cysteine kinase: thiD synthase tyrosine/aromatic BPET_RS15490 lipoyl diphosphate 6-phosphate glu BPET_RS03785 anthranilate an S-sulfanyl-[L- [+ 2 isozymes] glutaredoxin squalene aminotransferase: acrylate di-trans,octa-cis 3 a [glutamine UDP-N-acetyl- + + 7,8- synthase: hemC desulfurase]-S- 1-deoxy-D- MnmH: mnmH UDP-N-acetyl- ditrans,octacis- an N -methyladenine a mature phosphoenol + + Na RS07960 Na synthase: lipA a heme(III)-bound menadione NADH H + a uracil in DNA D-glycerate a DNA segment NADH cyanate H RS21175 H cysteine desulfurase] 4-hydroxy-3- 3: grxC a [ThiS sulfur- HMP-P synthase a 5-methylaminomethyl- BPET_RS14085 -undecaprenyl α-D-muramoyl- a CcmAB complex undecaprenyldiphospho- peptidoglycan synthetase]-O α-D-glucosamine ser a tRNA sec dihydroneopterin a [hydroxymethylbilane sulfanyl-L-cysteine xylulose-5- pro dGTP in DNA (n) pyruvate ATP roseoflavin a [lipoyl-carrier CcmCDE complex 4 dADP octaprenylbenzoate a protein with carrier protein] HpnC: 2-(Se-phospho) oxaloacetate phosphatephospho-N- L-alanyl-γ-D- N-acetyl-(N- (meso-DAP -(5'-adenylyl) UDP-N- glyoxylate/ recombinase scaffold 3'-triphosphate synthase] ES intermediate IscS subfamily 6 phosphate Ins(3)P 5'-phosphate 3 phosphomethylpyrimidine protein]-N -[(R)- 4-hydroxy-3- reduced L- hpnC selenouridine 34 in tRNA acetylmuramoyl- glutamyl-meso-2,6- acetylglucosaminyl) containing) -L-tyrosine acetylglucosamine hydroxypyruvate RecA: recA protein for glutathione cysteine kinase: BPET_RS02805 synthase: dxs NAD(+) a short a short polyprenylbenzoate hydroxymethylbilane cysteine residues dihydrolipoyl]-L-lysine tRNA 2- pentapeptide- NADH-quinone γ DNA-3- uracil-DNA 2-epimerase (non- reductase A: cyanase: F0F1 ATP iron-sulfur desulfurase: presqualene inositol diaminopimeloyl- cytochrome c muramoyl-L-alanyl- -D- DDE-type serine- + + chain RS22945 chain synthase: hemC bifunctional 5-(2-hydroxyethyl) C1 Compound Utilization and Assimilation oxidoreductase: methyladenine glycosylase: diphosphatase: H H cluster decarboxylase: ubiD BPET_RS14065 1-deoxy-D-xylulose diphosphate monophosphatase: selenouridine(34) transferase: D-alanyl-D-alanine deoxyguanosinetriphosphate biogenesis heme- isoglutaminyl-L-lysyl- hydrolyzing): wecB BPET_RS15675 integrase/ bifunctional cynS synthase fatty acid fatty acid flavin biosynthesis I (bacteria and plants) 7,8- D-glyceraldehyde hydroxymethylpyrimidine -4-methylthiazole BPET_RS08545 glycosylase I: lytic murein bifunctional [glutamate- BPET_RS08660 pyruvate nudC -tRNA assembly: iscU a [hydroxymethylbilane a [ThiI sulfur- a carboxy- 5-phosphate synthase BPET_RS17275 synthase BPET_RS03500 triphosphohydrolase: transporting (glycyl) -D-alanyl-D-alanine UDP-N- glyoxylate/ transposase/ riboflavin kinase/ 2-octaprenylphenol dihydroneopterin 3-phosphate kinase/ Fatty Acid and Lipid Degradation formaldehyde oxidation BPET_RS08550 nuoE 5 BPET_RS03710 transglycosylase: -ammonia ligase]- kinase: pyk ligase: an S-sulfanyl-[cysteine synthase] ES intermediate carrier protein]- adenylated- HpnD: hpnD MnmH: mnmH formate oxidation to CO BPET_RS24835 uracil-DNA acetylglucosamine recombinase: FAD synthetase: 3'-phosphate 4 1-deoxy-D-xylulose- [+ 2 isozymes] formaldehyde oxidation 2 ATPase BPET_RS09485 adenylyl-L-tyrosine hydroxypyruvate β serS chorismate 1-deoxy-D- S-sulfanyl- phosphomethylpyrimidine presqualene a 5-methylaminomethyl- VII (THF pathway) nuoF BPET_RS08565 DNA-3- glycosylase: reduced - nitrite nitrite desulfurase]-[disordered- [ThiS sulfur- lipoate salvage I II (glutathione-dependent) CcmA: ccmA 2-epimerase (non- reductase A: BPET_RS19070 BPET_RS14255 ammonium CO sulfite RS02035 sulfite RS25305 GTP hydroxymethylbilane AIR xylulose-5- kinase: thiD 5-phosphate diphosphate 2-selenouridine 34 oleate β-oxidation nuoH nuoI monofunctional [+ 5 isozymes] phosphorylase/ BPET_RS24055 a DNA segment nicotinamide D- 2 formate formate form scaffold tyr L-cysteine carrier protein] 4-methyl-5-(2- myo-inositol β methyladenine hydrolyzing): wecB BPET_RS24665 AMP aminodeoxychorismate/ synthase: hemC phosphate reductoisomerase: in tRNA fatty acid -oxidation I (generic) formaldehyde formate BPET_RS08580 nuoK biosynthetic [glutamate-- UDP-N-acetyl-α- pyruvate in reverse ribonucleotide protein] complex phosphooxyethyl) presqualene formaldehyde triphosphate glycosylase I: dATP roseoflavin an L-seryl- 3-(all-trans anthranilate synthase phosphomethylpyrimidine HMP-PP (R)-lipoate BPET_RS12780 formate dehydrogenase undecaprenyldiphospho- UMP 2'-deoxyguanosine BPET_RS08595 nuoN peptidoglycan a mature GlcNAc-1,6- ammonia-ligase] hydroxypyruvate orientation [cysteine desulfurase]-S- bifunctional D-erythro-7,8- a holo-[hydroxymethylbilane synthase: thiazole protein S-nitrosylation oleate a heme(III)-bound BPET_RS23535 D-mannosamine [tRNA sec ] synthase ThiC: thiC diphosphate a (3Z)-alk-3- transglycosylase: adenylyltransferase: an apyrimidinic uracil adenine 2+ 2+ sulfanylcysteine:[acceptor -octaprenyl) 3,4-dihydroxy- component II: synthase] dxs lipoate--protein and denitrosylation subunit alpha: fdhF N-acetylmuramoyl-L- a CcmABCD complex peptidoglycan anhMurNAc- Zn RS24245 Zn an oxidized dihydroneopterin MEP synthase enoyl-CoA a 5,10- γ CcmE protein (n) glnE site in DNA dinucleotide protein]-cysteine benzene-1,2-diol 2-butanone- BPET_RS01590 a thiocarboxylated- ligase A: acyl-CoA formate dehydrogenase alanyl- -D-glutamyl-meso mtgA (meso-DAP L-Ala-γ-D-Glu- c-type O HMP-P 1-deoxy-D- thiamine HpnD: hpnD a [protein]- S-(hydroxymethyl) 2 dihydroneopterin BPET_RS26370 methylenetetrahydrofolate -2,6-diaminopimeloyl- + an apurinic site cytochrome sulfurtransferase: bifunctional 2- 4-phosphate aminodeoxychorismate [ThiS sulfur- synthetase: ∆ 3 2 subunit gamma: NAD menadiol 3-methyladenine containing) DAP-D-Ala cytochrome xylulose 5- 2-iminoacetate phosphate [(R)- 2-C-methyl-D- L-cysteine -cis-∆ -trans- glutathione a reduced polyprenyl-6- aldolase: folB squalene bifunctional BPET_RS23580 D-alanyl-D-alanine di-trans,octa-cis within DNA a [glutamine- c oxidase BPET_RS14065 synthase/GTP synthase component phosphomethylpyrimidine phosphate carrier protein] synthase: lipoyl]adenylate BPET_RS00215 enoyl-CoA a peptidoglycan Zn 2+ RS14560 Zn 2+ c-type H O a [cysteine desulfurase]- erythritol 4-phosphate synthase methylenetetrahydrofolate S-(hydroxymethyl) 2 hydroxyphenol cyclohydrolase II: 6-(hydroxymethyl) I: BPET_RS04405 kinase: BPET_RS02805 CO dimer (S. aureus) -undecaprenyl synthetase]- an oxidized BPET_RS02800 lipoate--protein cytidylyltransferase: HpnC: oleoyl-CoA isomerase: glutathione 2 ADP cytochrome S-sulfanyl-[disordered- methylase/3- BPET_RS20085 -7,8-dihydropterin thiazole synthase: dehydrogenase/ diphosphate L-tyrosine c-type O 4-amino-4- bifunctional ligase A: BPET_RS08625 BPET_RS15000 dehydrogenase/ 2 form scaffold demethylubiquinol 3- 2,5-diamino-6- BPET_RS02455 hpnC a [protein] 3- methenyltetrahydrofolate 2-amino-4-hydroxy-6- deoxychorismate hydroxymethylpyrimidine BPET_RS26370 4-(cytidine 5'- acyl-CoA cytochrome RS11940 protein] complex thiamine nitrosothio- cyclohydrolase FolD: folD class III alcohol a sugar RS13065 a sugar a reduced O-methyltransferase (5-phospho-D- hydroxymethyldihydropteridine kinase/ a [lipoyl-carrier diphospho)-2-C- squalene a (2E)-2- IscS subfamily 2-[(2R,5Z)- phosphate dehydrogenase: dehydrogenase: c-type H O UbiG: ubiG ribosylamino) 6 L-alanine 2 diphosphokinase: BPET_RS04150 superpathway of thiamine diphosphate biosynthesis II enoyl-CoA a 5,10- N-acetyl-muramoyl-(L- a DNA containing lipid II (meso (R)-4-hydroxy- cysteine phosphomethylpyrimidine protein]-N -[(R methyl-D-erythritol BPET_RS04300 α an N-terminal + + cytochrome 2-methoxy- pyrimidin- 2-carboxy-4- thiamine- NAD de novo biosynthesis BPET_RS00775 UDP-N-acetyl- -D-muramoyl- D-alanyl-D-alanine an L-phenylalanyl- H O oxaloacetate an N-modified a nucleoside 1-butanesulfonate FMN NAD(P)H H D-glycerate FMN NADH H nitrite arsenite RS05205 arsenite (7,8-dihydropterin- 4-(cytidine 5'- methenyltetrahydrofolate diphosphate 2 alanyl-γ-D-glutamyl-L- an apurinic/ diaminopimelate 4-methyl-2- a protein desulfurase: kinase: thiD )-lipoyl]-L-lysine [+ 27 isozymes] γ arginyl-[protein] Phe ITP RNA 6-(all-trans- 4(3H)-one methylthiazol-5(2H phosphate I (from aspartate) enoyl-CoA enoyl-CoA L-alanyl- -D-glutamyl-L-lysine [tRNA ] aminoacyl-[tRNA] triphosphate ATP 6-yl)methyl diphospho) bifunctional S-formylglutathione lysyl-D-alanyl-D-alanine) apyrimidinic site containing) glyoxylate/ RNA oxoglutarate respiratory a sugar RS11630 a sugar BPET_RS14065 octaprenyl)phenol 4-aminobenzoate a [ThiS sulfur- )-ylidene]ethyl superpathway of pyridoxal 5'-phosphate biosynthesis and salvage kinase: thiL (2E,9Z)- hydratase: hydratase: a 2,3,4- 4-carboxy-4- ATP- an S-sulfanyl-[cysteine bifunctional diphosphate cys HMP-PP -2-C-methyl- (3S)-2,3- hydroxypyruvate nitrate reductase: D-ribulose octadecenoyl-CoA acyl-CoA BPET_RS01660 BPET_RS17305 saturated (3R)-3- methylenetetrahydrofolate FMNH2-dependent NADPH- NADPH- hydroxy-2- dependent desulfurase]-S- diaminohydroxyphosphoribosylaminopyrimidine carrier protein] phosphate thiamine asp a [protein]- a 2,3,4-saturated bifunctional UDP-N- leucyl/ RdgB/HAM1 family non- reductase A: BPET_RS25250 5-phosphate D-erythrose D-erythritol epoxy-2,3- acyl-CoA hydroxyacyl-CoA dehydrogenase/ S-formylglutathione penicillin-binding endonuclease monofunctional aminoacyl- DNA-directed oxoadipate protease arsenite RS23075 arsenite sulfanyl-[disordered- deaminase/5-amino-6-(5-phosphoribosylamino) dihydropteroate IscS subfamily S-nitrosoglutathione enoyl-CoA dehydrogenase: [+ 3 isozymes] acetylmuramoyl-L- alkanesulfonate dependent dependent 4-phosphate diphosphate L-aspartate lipoate biosynthesis kinase: ispE dihydrosqualene L-cysteine fatty acid synthetase: methenyltetrahydrofolate hydrolase: fghA phenylalanyl- canonical purine NTP biosynthetic phosphoenolpyruvate RNA polymerase BPET_RS24665 polynucleotide narH narI bifunctional cysteine thiamine BPET_RS05645 protein 2: mrdA III: nth tRNA monooxygenase: FMN FMN aldolase/ subunit Peptide RS15590 Peptide form scaffold 2-methoxy-6-all uracil reductase RibD: ribD synthase: folP oxidase: nadB 2-phospho-4-(cytidine hydratase: a 2,3,4- alanyl-D-glutamate-- tRNA--protein pyrophosphatase: rdgB carboxykinase (GTP) subunit omega: adenylyltransferase and incorporation II S-(hydroxymethyl) BPET_RS00215 a 2,3,4-saturated[+ 27 isozymes] cyclohydrolase FolD: folD D-alanyl-D-alanine bifunctional DNA- peptidoglycan hydrolase: ssuD reductase: glyoxylate/ reductase: oxaloacetate respiratory HslV: hslV protein] complex trans-octaprenyl- 3,4-dihydroxy- 5-amino-6-(5- desulfurase: phosphate 2-iminosuccinate 5'-diphospho)-2-C- BPET_RS22110 saturated (3S)-3- formate 2, 6-diaminopimelate transferase: : BPET_RS14770 PcnB: pcnB [cysteine desulfurase]-S- a carboxy- glutathione fatty acyl CoA an N 10 - inorganic transglycosylase: arfB BPET_RS11385 hydroxypyruvate decarboxylase: nitrate reductase: an oxidized 2-butanone- phospho-D- 7,8- BPET_RS14065 synthase: [+ 3 isozymes] hydroxyacyl-CoA3-hydroxyacyl-CoA ligase MurE/UDP- BPET_RS04705 carboxypeptidase/ formamidopyrimidine ssuE ssuE a peptide sulfanylcysteine:[acceptor 1,4-benzoquinol octanoate methyl-D-erythritol dehydrogenase/ formyltetrahydrofolate diphosphatase: ppa mtgA [+ 3 isozymes] reductase A: narI narH c-type O 4-phosphate ribosylamino)uracil dihydropteroate an [L-cysteine adenylated- BPET_RS02800 4-phospho- quinolinate dehydrogenase: D-alanyl-D-alanine- glycosylase/ aminoacyl- ligK 2 bifunctional lipoate--protein 2-C-methyl-D- (S)-3-hydroxy-(9Z) N-acetylmuramoyl- Peptide RS19665 Peptide protein]-cysteine synthase/GTP bifunctional desulfurase]-S- [ThiS sulfur- class III alcohol BPET_RS15000 endopeptidase: dacB DNA-(apurinic 1-butanal sulfite BPET_RS15675 BPET_RS19420 cytochrome RS16305 demethylmenaquinone bifunctional D-glyceraldehyde D-erythronate synthase erythritol 2,4- -octadecenoyl-CoA formyltetrahydrofolate tripeptide--D-alanyl-D- phosphoenolpyruvate tRNA RNA pyruvate a reduced sulfurtransferase: ligase A: dehydrogenase: L-phenylalanyl-L- + + cyclohydrolase II: diaminohydroxyphosphoribosylaminopyrimidine sulfanyl-L-cysteine carrier protein] Phe or apyrimidinic lipid II (meso di-trans,octa-cis IDP FMNH NAD(P) hydroxypyruvate FMNH NAD nitrate thiamine NadA: nadA coenzyme A 3-hydroxyacyl-CoA deformylase: purU alanine ligase MurF: murF + hydrolase: 2 2 c-type H O BPET_RS14065 methyltransferase/2- tetrahydrofolate 3-phosphate BPET_RS26370 cyclodiphosphate BPET_RS00775 3-hydroxyacyl-CoA arginyl-[protein] a tRNA H RNA 2 BPET_RS20085 deaminase/5-amino-6-(5-phosphoribosylamino) a [lipoyl-carrier protein] phosphate site) lyase: mutM diaminopimelate -undecaprenyl pth cytochromean oxidized a [cysteine methoxy-6-polyprenyl- synthase/ phosphate synthase: preQ biosynthesis dehydrogenase: N-acetyl-muramoyl-(L- uracil reductase RibD: ribD IscS subfamily 1-deoxy-D- quinolinate 6 0 dehydrogenase: diphosphate c-type O desulfurase]-(S- N -octanoyl-L-lysine S-(hydroxysulfenamide) BPET_RS17045 formate alanyl-γ-D-glutamyl- D-ala containing) sulfate RS14880 sulfate 2 1,4-benzoquinol 3,4-dihydroxy- dihydrofolate xylulose-5- thiamine- BPET_RS08630 BPET_RS17045 UDP-N-acetyl-α-D-muramoyl-L-alanyl- sulfanyl) -[disordered- 5-amino-6-(5- cysteine gly (3R)-3-hydroxy-2-oxo- glutathione cytochrome 2 methylase UbiE: ubiE 2-butanone- synthase: folC lipoyl a 2,3,4-saturated acetyl-CoA C- a 2,3,4-saturated γ L-lysyl-D-alanine) a reduced RS16440 phospho-D- desulfurase: phosphate phosphate 4 phosphooxybutanoate 2-C-methyl-D-erythritol- 3-hydroxyacyl-CoA -D-glutamyl-L-lysyl-D-alanyl-D-alanine a 3'-terminal a 5'-phospho- an N-modified an uncharged form scaffold 6-methoxy-3- 4-phosphate synthase: lipA fatty acyl CoA acyltransferase: 3-oxoacyl-CoA c-type H O ribitylamino)uracil 7,8-dihydrofolate BPET_RS14065 synthase: kinase: thiL 2,4-cyclodiphosphate GTP dehydrogenase: unsaturated sugar [DNA] tRNA 2 protein] complex 3-phosphoserine/ amino acid an oxidized methyl-2-all- synthase: a [lipoyl-carrier BPET_RS00285 cytochrome monoglutamate dxs thiamine phosphohydroxythreonine GTP BPET_RS15000 predicted c-type O trans-octaprenyl- BPET_RS00120 adenosylcobalamin NaMN protein]-N 6 -[(R)- flavodoxin- [+ 2 isozymes] 2 a thiocarboxylated- 1-deoxy-D- diphosphate cyclohydrolase ABC 1,4-benzoquinol salvage from cobalamin transaminase: serC dependent tRNA processing hydroxylamine 3-oxo-(9Z)- sulfate sulfate cytochrome RS16445 1-deoxy-L- AIR [ThiS sulfur- xylulose 5- dihydrolipoyl]-L-lysine I FolE2: a ring-opened 7- a reduced GlcNAc-1,6- a 2'- L-alanyl-γ-D- (24R,25R)- an N-terminal- an N-terminal- (E)-4-hydroxy-3- transporter a reduced 2-iminoacetate 4-phosphooxy- nicotinate (E)-4-hydroxy- octadecenoyl-CoA an N-terminal an L-phenylalanyl- a [protein]- a DNA methyl (S)-2- lysine within a [cysteine desulfurase]- 2-octaprenyl-3- glycero-tetrulose carrier protein] phosphate 7,8- BPET_RS15490 methylguanine ubiquinone-6 electron-transfer anhMurNAc-L-Ala- deoxyribonucleoside (R)-lipoate 3α,7α,12α,24- L-methionyl-L- L-methionyl- methylbut-2-en- γ-L-glutamyl- gly nitrate c-type H O ARP L-lysyl-[protein] Phe L-cysteine phosphotriester [DNA] glu glutamyl-meso-2,6- gcv protein H of sulfate 2 methyl-6-methoxy- 4-phosphate cob(I)alamin L-threonine (nicotinamide) 3-methylbut- dihydroneopterin a polycistronic acetyl-CoA C- [tRNA ] adenine aminobutanoate GTP cytochromean oxidized [scaffold protein- a 7,8-dihydrofolate phosphomethylpyrimidine D-glyceraldehyde in DNA flavoprotein γ-D-Glu-DAP-D-Ala PRPP 5'-triphosphate diaminopimeloyl- tetrahydroxy-5β- alanyl-[protein] glycyl-[protein] 1-yl diphosphate D-alanine respiratory pyruvate nucleotide 2-enyl- 3'-triphosphate tRNA precursor acyltransferase: flavodoxin- c-type O (2Fe-2S)] complex 1,4-benzoquinol synthase ThiC: thiC thiazole synthase: 4-hydroxythreonine- 3-phosphate acetyl-CoA D-alanine cholestanoyl 3-alpha,7-CoA nitrate reductase: ribonucleoside sulfate RS19705 sulfate 2 adenylyltransferase: diphosphate BPET_RS17320 dependent cytochrome hydroxylase: 6,7-dimethyl-8- dihydrofolate BPET_RS02455 4-phosphate 6-carboxytetrahydropterin leucyl/ electron transfer methylated-DNA-- lipoate--protein alpha, 12-alpha- narI narH triphosphate a reduced RS16450 nadD synthase: ispG ammonium bifunctional DNA- 1,6-anhydro-N- group II glutamate-- type I methionyl type I methionyl (E)-4-hydroxy- glutathione BPET_RS20470 ribityllumazine cob(II)alamin reductase: HMP-P dehydrogenase synthase QueD: queD [+ 2 isozymes] phenylalanyl- flavoprotein- [protein]-cysteine S- adenine ligase A: trihydroxy-5-beta- BPET_RS19420 reductase: c-type H O 1-deoxy-D- formamidopyrimidine acetylmuramyl- intron reverse cysteine ligase: aminopeptidase: aminopeptidase: 3-methylbut- synthase: 2 synthase: 2-[(2R,5Z)- (E)-4-hydroxy-3- Aromatic Compound Degradation methyltransferase: peptidase S66: BPET_RS26370 BPET_RS20485 PdxA: pdxA xylulose-5- nicotinate adenine tRNA--protein ubiquinone phosphoribosyltransferase: cholest-24-enoyl- BPET_RS15635 cytochromean oxidized a [co-chaperone]- 3-demethylubiquinol-8 cob(I)yrinic acid phosphomethylpyrimidine 2-carboxy-4- methylbut-2-en- 6-carboxy-5,6,7,8- (7Z)-hexadecenoyl-CoA glycosylase/ L-alanine transcriptase/ BPET_RS01975 map map 2-enyl- gshB respiratory BPET_RS20080 4-hydroxythreonine- dinucleotide a tRNA precursor transferase: oxidoreductase: BPET_RS02205 BPET_RS02305 BPET_RS12960 CoA hydratase: sulfate RS03595 sulfate c-type O [scaffold protein- a,c-diamide kinase: BPET_RS02805 phosphate tetrahydropterin a tRNA precursor DNA-(apurinic amidase maturase: ltrA diphosphate nitrate reductase: dGTP 2 a tetrahydrofolate methylthiazol-5(2H 1-yl diphosphate glutamate-- a [glycine-cleavage (24E)-3α,7α,12α- cytochrome bifunctional 2- 4-phosphate synthase: NAD+ synthase: NAD+ synthase: with a 5' with a 5' acyl-CoA phenylacetate β BPET_RS04705 BPET_RS09085 methylated-DNA-- BPET_RS06185 RS16455 (2Fe-2S)] complex adenosyltransferase: 7-carboxy-7- aromatic compounds degradation via -ketoadipate 3-phenylpropanoate and 3-(3- or apyrimidinic AmpD: ampD [+ 6 isozymes] 6 synthase: ispG BPET_RS25250 a reduced 6,7-dimethyl-8-(1- bifunctional )-ylidene]ethyl dehydrogenase: degradation I (aerobic) benzoyl-CoA cysteine ligase: complex H protein] N trihydroxy- an N-terminal L- an N-terminal 2-C-methyl-D- SSQ1 polyprenyl-6- dehydrogenase dxs BPET_RS14535 BPET_RS14535 extension and extension and a site) lyase: mutM [protein]-cysteine S- L-alanyl-γ-D- norophthalmate narH narI c-type H O D-ribityl)lumazine BPET_RS24290 hydroxymethylpyrimidine phosphate deazaguanine degradation I (aerobic) superpathway of hydroxyphenyl)propanoate BPET_RS23825 5β-cholest- met alanyl-[protein] met glycyl-[protein] erythritol-2,4- 2 PdxA: pdxA 4-hydroxy- a long 3' trailer short 3' extension BPET_RS04300 an oxidized methyltransferase: glutamyl-meso- -[(R)-lipoyl]-L-lysine nitrite nitrite an oxidized chaperone: hydroxyphenol cob(II)alamin- synthase: queE salicylate degradation L-phenylalanyl- + β γ D-ala cytochrome kinase/ + catechol degradation to 2-hydroxypentadienoate Phe H ubiquinol-6 N-acetyl- -D- L-alanyl- -D- AMP 24-enoyl-CoA cyclodiphosphate nitrite riboflavin 3-amino-1- 1-deoxy-D- NAD 3-methylbut- ribonuclease [+ 27 isozymes] coenzyme A phenylacetate a tRNA electron-transfer BPET_RS23530 diaminopimelate RS25245 c-type O hscA methylase/3- [corrinoid phosphomethylpyrimidine 7-carboxy-7- benzoyl-CoA a [DNA]- 2,6-diamino-4- L-lysyl-[protein] glucosamine-1,6- glutamyl-meso-2,6- [DNA] 2 a [chaperone-ATP]- synthase: NAD salvage pathway I (PNC VI cycle) hydroxyacetone xylulose 5- 2-enyl P protein 3-phenylpropanoate a 5'-phospho- flavoprotein γ-L-glutamyl-(S)- nitrate cytochrome RS20575 demethylubiquinol 3- adenosyltranferase] adenosylcobinamide-GDP kinase: thiD deazaguanine (2E,7Z)- benzoyl- salicylate protocatechuate nucleotide- hydroxy-5-(N-methyl) 4-oxo-2-pentenal anhydro-N-acetyl- diaminopimeloyl- nitrate a reduced [co-chaperone]- BPET_RS03085 2-(2-carboxy-4- pyridoxine 1-phosphate phosphate coenzyme A biosynthesis 4-hydroxy- diphosphate ribonuclease component: catechol 1,2- [DNA] 2-aminobutanoate O-methyltransferase salvage from cobinamide I hexadecenoyl-CoA phenylacetate- CoA 2,3- 3'-phosphate formamidopyrimidine β-D-muramate D-alanine a [protein]-S- nitrate RS19395 nitrate c-type H O [scaffold protein- methylthiazol-5- I (prokaryotic) 3-methylbut- reductase: 7-cyano-7- PH: rph BPET_RS25370 6-hydroxynicotinate dioxygenase: catA protocatechuate [DNA] an oxidized 2 UbiG: ubiG riboflavin HMP-PP NAD + pyridoxamine enoyl-CoA -CoA ligase epoxidase: 3-phenylpropionate/ methyl-L-cysteine cytochrome (2Fe-2S)] complex yl)ethyl phosphate pyridoxine 5'- 2-enyl ispH deazaguanine a tRNA precursor 3-monooxygenase: 3,4-dioxygenase: c-type O cob(II)inamide pyridoxine/ (R)-4'- hydratase: family protein: boxA boxB cis,cis-muconate cinnamic acid 2 cob(I)alamin- phosphate diphosphate synthase a tRNA with a short 2,3-epoxy-2,3- ubiquinol-8 bifunctional cob(I)yrinic acid pyridoxine/ BPET_RS06730 pcaG pcaH cytochrome pyridoxal/ phosphopantothenate BPET_RS22110 BPET_RS05655 dioxygenase 3-(3- 2+ 2+ RS20640 [corrinoid synthase: reductase: QueC: queC precursor with 3' extension dihydrobenzoyl- a 7,8-dihydro- a carboxy- a 1-acyl-2- 2030 (24E)-3α,7α- a peptide with Ca RS11455 Ca a reduced SSQ1 riboflavin kinase/ a,c-diamide thiamine pyridoxal/ bifunctional muconate an N-formyl-L- adenine adenosyltranferase] pyridoxamine ispH a 5' extension [+ 3 isozymes] phenylacetate-- CoA catechol 3-carboxy-cis,cis-muconate subunit beta: hydroxyphenyl) a lipid II a peptidoglycan a 5-L-glutamyl- (E)-glutaconate acetyl-CoA H O β β-citryl-L- 3-methylgentisate nitrate c-type H O chaperone FAD synthetase: phosphate BPET_RS16525 pyridoxamine phosphopantothenoylcysteine IPP cycloisomerase: 8-oxoguanine an amino acid adenylated- cys methionylaminoacyl- arachidonoyl- in 23S rRNA 2 dihydroxy-5 - L-threo-3-phenylserine an N-terminal 2 cob(I)yrinic acid adenosyltransferase: NAD+ synthase: kinase: pdxK preQ CoA ligase: paaF 2,3-epoxybenzoyl- BPET_RS18975 propanoate [peptide] GTP dITP glutamine ATP ancytochrome oxidized ATPase: hscA synthase: decarboxylase/ 0 ribonuclease (S)-3-hydroxy-(7Z) in DNA [ThiS sulfur- tRNA sn-glycerol 23S rRNA cholest-24-enoyl-CoA L-methionine gentisate 1,2- respiratory BPET_RS14255 a,c-diamide [corrinoid BPET_RS24290 BPET_RS14535 kinase: pdxK CoA dihydrolase: catechol 1,2- BPET_RS07085 3-carboxy- 3-alpha,7- c-type cytochrome- O BPET_RS02800 phosphopantothenate-- ribonuclease: PH: rph -hexadecenoyl-CoA carrier protein] 3-phosphate CTP (adenine(2030)-N(6) RdgB/HAM1 family non- dioxygenase: nitrate reductase: ribonucleoside 2 adenosyltranferase]- NAD+ synthase: NAD(+) pyridoxal BPET_RS18135 muconate cis,cis-muconate 3-(5,6- monofunctional alpha, 12-alpha- Ca 2+ RS04605 Ca 2+ cytochrome a [chaperone- NADP FMN adenosyltransferase: pyridoxine pyridoxamine BPET_RS25370 3-hydroxyacyl-CoA dioxygenase: catA CoA synthetase: canonical purine NTP gtdA narI narH triphosphate a reduced c oxidase, an [2Fe-2S] BPET_RS14535 (R)-4'- cysteine ligase CoaBC: coaBC phenylacetyl-CoA cis-3,4- dihydroxycyclohexa- bifunctional DNA- biosynthetic gamma- peptide )-methyltransferase trihydroxy-5-beta- low-specificity type I methionyl ADP]-[disordered- biosynthesis BPET_RS24290 cob(II)inamide diphosphatase: nudC 5'-phosphate 5'-phosphate cycloisomerase: cycloisomerase: BPET_RS18680 elongation pyrophosphatase: rdgB N-formylglutamate reductase: c-type cbb3-type H O thiamine phosphopantothenoyl- dehydrogenase: glutamyltransferase: phosphatidate RlmJ: rlmJ L-threonine aminopeptidase: gentisate 1,2- BPET_RS19420 2 cluster protein adenosylcob(III) dehydroadipyl- cis,cis-muconate BPET_RS16990 BPET_RS19345 1,3-dien-1-yl) formamidopyrimidine peptidoglycan IscS subfamily deformylase: factor 4: lepA cholest-24-enoyl- form scaffold bifunctional pyridoxine/ BPET_RS15000 phenylacetate- glutaconate CoA- nucleotide deformylase: hutG BPET_RS15635 cytochrome phosphate L-cysteine CoA semialdehyde propanoate glycosylase/ transglycosylase: BPET_RS16620 cysteine BPET_RS03890 cytidylyltransferase: 23S rRNA CoA hydratase: aldolase: ltaE map dioxygenase: respiratory protein] complex NAD + riboflavin kinase/ alamin-[corrinoid pyridoxamine pyridoxamine DMAPP (2-carboxy-2,5-dihydro- transferase: [+ 6 isozymes] nicotinate adenine dinucleotide NMN pyridoxal/ 3-hydroxyacyl-CoA CoA oxygenase/ 3,4-dehydroadipyl- muconate (+)-muconolactone BPET_RS12785 (adenine(2030)-N(6) pyrophosphohydrolase: gtdA nitrate reductase: dATP chloride RS13480 chloride FAD synthetase: adenosyltranferase] thiamine- bifunctional an uncharged 5-oxofuran-2-yl)-acetate DNA-(apurinic mtgA [+ 2 isozymes] desulfurase: peptide (24R,25R)-3α,7BPET_RS06185α,24- (2E)-2-methyl- non- NAD kinase: [corrinoid 5'-phosphate 5'-phosphate pyridoxamine dehydrogenase: reductase: cycloisomerase: BPET_RS18685 )-methyltransferase BPET_RS22610 cob(I)yrinic acid phosphate phosphopantothenoylcysteine tRNA CoA semialdehyde 2,3-dihydroxy-2,3- or apyrimidinic BPET_RS14065 deformylase: trihydroxy-5β- 4,6-dioxohept- BPET_RS25250 chaperonin BPET_RS07860 BPET_RS14255 adenosyltranferase]- oxidase: pdxH oxidase: pdxH kinase: pdxK paaA paaB H + citrate kinase: thiL decarboxylase/ BPET_RS17045 dehydrogenase: BPET_RS07085 dihydrophenylpropionate site) lyase: mutM α a CDP-1-acyl- RlmJ: phosphate dIMP benzaldehyde gln narH narI + a,c-diamide muconolactone Delta- carboxymuconolactone di-trans,octa-cis an -(5-L- BPET_RS23935 GDP cholestanoyl CoA gly met a peptide 2-enedioate molecular NADP cob(I)inamide paaC paaJ paaK a peptidoglycan BPET_RS11235 FAD nicotinate (nicotinamide) phosphopantothenate-- 3-oxo-(7Z)- BPET_RS18150 muconate dehydrogenase: bphB 2-arachidonoyl- 6 nitrite chaperone adenosyltransferase: cob(I)yrinic acid thiamine 2-(1,2-epoxy-1,2- isomerase: catC decarboxylase: -undecaprenyl glutamyl)- a peptide a thiocarboxylated- acetate (E)-glutaconyl-CoA an N - chloride RS16830 chloride cysteine ligase CoaBC: coaBC cis-3,4- nucleotide hexadecenoyl-CoA cycloisomerase: [ThiS sulfur- glycerol 2030 ATPase: hscA BPET_RS24290 a,c-diamide diphosphate PLP dihydrophenyl) muconolactone Delta- BPET_RS17365 a [DNA]- a 5'-phospho- 7,8-dihydro- diphosphate amino acid AMP ala methyladenine dehydroadipyl- BPET_RS16990 4-oxo-2-pentenal a L-methionylaminoacyl- an [Fe-S cluster adenosyltransferase: adenylyltransferase: acetyl-CoA C- [+ 3 isozymes] 2,3-DHP nucleotide- carrier protein] formate in 23S rRNA adenosylcobalamin 4'-phosphopantetheine lipoprotein posttranslational modification acetyl-CoA CoA isomerase: catC [DNA] 8-oxoguanine tRNA biosynthesis nadD acyltransferase: 3'-phosphate Mg 2+ 2+ BPET_RS24290 2-(1,2-epoxy-1,2- (+)-muconolactone RS01610 Mg chaperone]-ATP BPET_RS17320 2+ 2+ bis(guanylyl molybdopterin) cofactor sulfurylation pantetheine- a [prolipoprotein]- dihydrophenyl) (4,5-dihydro-5- Co Co adenosylcobinamide phosphate muconolactone Delta- oxofuran-2-yl)-acetate L-cysteine [+ 2 isozymes] acetyl-CoA diphenyl ethers γ UDP-N-acetyl- (2S)- an N-terminal- a peptide with a (1->4)- phosphopantothenate biosynthesis I quinoxaline-2- L-alanyl- -D-glutamyl-L- + β folate transformations III (E. coli) NaMN nicotinamide adenylyltransferase: trans-2,3- isomerase: catC (2Z,4E)-2- degradation 34 MoO - a (6S)-5- acetoacetate succinyl-CoA ammonium NAD H O a [protein] Ser/Thr -citryl-L- 4-methylgentisate a cytidine 34 α prolipoprotein isomerase: paaB 3-oxoadipate enol- a 5,10-gly a uridine aryl-carrier protein 2 glu 2 α-D-muramoyl- D-glt methylsuccinyl- L-methionyl-L- an N-terminal lys -D-glucan (5Z)-tetradecenoyl-CoA carboxyl adenylate GTP lysyl-D-alanyl-D-alanine acetyl-CoA XTP 2+ 2+ cys coaD dehydroadipyl-coA hydroxy-6- molybdopterin glutamate gentisate 1,2- in tRNA Ile2 1,4-alpha- Co Co lipoate salvage II nicotinate molybdopterin biosynthesis diacylglyceryl 2-(1,2-epoxy-1,2- muconolactone Delta- lactonase: pcaD catechol degradation III methylenetetrahydrofolate in tRNA molybdopterin formyltetrahydrofolate L-alanine CoA serine/threonine seryl-[protein] L-alanine RS17215 glutathione 3-methyl-2-oxobutanoate enoyl-CoA oxonona-2,4- diphenyl ether cofactor RdgB/HAM1 family non- dioxygenase: glucan Mg 2+ Mg 2+ biotin biosynthesis from a tetrahydrofolate phosphoribosyltransferase: 3'-dephospho- transferase: acyl-CoA dihydrophenyl) isomerase: catC 3-oxoadipate enol- (ortho-cleavage pathway) protein kinase: IscS subfamily a [lipoyl-carrier biosynthesis hydratase: diene-1,9-dioate penicillin-binding 3-oxoacid CoA- nitrite reductase canonical purine NTP branching 8-amino-7-oxononanoate I adenosyl-cobinamide BPET_RS10310 CoA BPET_RS03385 dehydrogenase: (4,5-dihydro-5- lactonase: pcaD BPET_RS21570 type I methionyl gtdA 6 3-methyl-2-oxobutanoate acetyl-CoA diphenyl ether tRNA uridine-5- acyl carrier bifunctional UDP-N- 3-oxoadipyl- tRNA cysteine protein]-N -[(R phosphate BPET_RS01660 catechol molybdenum cofactor protein 2: mrdA transferase small subunit pyrophosphatase: rdgB N-formylglutamate aminopeptidase protein nicotinate GTP dephospho- a [prolipoprotein]- BPET_RS05645 isomerase: oxofuran-2-yl)-acetate carboxymethylaminomethyl(34) protein: acpP tetrahydrofolate acetylmuramoyl- CoA HPr kinase/ aminopeptidase: gentisate 1,2- lysidine(34) (8S)-8-amino-7- )-lipoyl]-L-lysine hydroxymethyltransferase: 2,3-dioxygenase: NirD: nirD deformylase: hutG N: pepN 2+ 2+ desulfurase: cys glu methionine ATP CoA kinase: S-1,2-diacyl-sn- [+ 3 isozymes] 3-oxoadipate catechol 1,2- guanylyltransferase D-alanyl-D-alanine subunit A: nucleotide dioxygenase: GlgB: glgB Mg RS03585 Mg phosphoribosyltransferase: cys panB [+ 27 isozymes] BPET_RS04130 3-oxoadipate enol- BPET_RS18985 synthesis enzyme MnmG: mnmG [+ 2 isozymes] synthase/ L-alanine--D- thiolase: phosphorylase: map synthetase a (1,6)-α-D- oxononanoate BPET_RS14065 synthase: metH (3S)- dioxygenase: catA MobA: mobA carboxypeptidase/ BPET_RS07210 nitrite reductase: pyrophosphohydrolase: adenosylmethionine- pncB GTP 3',8-cyclase BPET_RS02675 glyceryl-L-cysteine (2E,5Z)- lactonase: pcaD (1S,2S)-3- dihydrofolate glutamate ligase: pcaF BPET_RS02230 gtdA TilS: tilS an [L-cysteine bis(guanylyl 2-oxepin-2(3H)- hydroxyadipyl- 3-oxoacid CoA- (2Z)-2- tRNA uridine-5- D-alanyl-D-alanine- [+ 4 isozymes] BPET_RS18480 (2E)-3-methyl- glucosyl-(1,4) -8-amino-7- (R)-lipoate dihydrofolate molybdopterin- MoaA: moaA 2-dehydropantoate cis,cis-muconate synthase: folC BPET_RS03505 a [protein] (L-serine/L- BPET_RS22610 desulfurase]-S- molybdopterin) glutamate-- adenosylcobinamide- IscS subfamily coenzyme A tetradecenoyl-CoA ylideneacetyl-CoA CoA 3-oxoadipate enol- transferase subunit hydroxypenta- succinate phenoxycyclohexa- carboxymethylaminomethyl(34) a quinoxaline-2- an N-terminal 4,6-dioxohept- -α-glucan oxononanoate synthase lipoprotein bis(guanylyl endopeptidase: dacB threonine) phosphate XMP citrate glu ala a peptide a metal a metal reductase: GTP 3',8-cyclase lactonase: pcaD 3,5-diene-1,2-diol met 34 sulfanyl-L-cysteine cofactor lipoate--protein cysteine ligase: GDP glycine cleavage cysteine signal 3-hydroxyacyl-CoA A: BPET_RS07210 muconate 2,4-dienoate synthesis GTPase MnmE: mnmE carboxyl-[aryl- 4-methyl-3- L-seryl-[protein] 2-enedioate a lysidine RS02100 transaminase: adenylyltransferase 2-dehydropantoate ∆ 3 ∆ 2 AMP molybdopterin) cation cation BPET_RS20485serine nicotinate MoaA: moaA -cis- -trans- enoyl-CoA cis-2,3- Ile2 IscS subfamily formate ligase A: BPET_RS01975 system protein desulfurase: MoeB: moeB peptidase: dehydrogenase: 3-oxoadipate [+ 4 isozymes] cycloisomerase: carrier protein] a (6S)-5- acetoacetyl-CoA succinate nitrite UDP-N-acetyl- oxoadipyl-CoA in tRNA BPET_RS00055 a 7,8-dihydrofolate hydroxymethyltransferase:a 5-methyltetrahydrofolate (8S)-3',8-cyclo-7,8- 2-reductase: panE enoyl-CoA hydratase: dihydrobiphenyl- cofactor L-alanyl-γ-D-glutamyl- (7R,8S)- cysteine dehydrogenase BPET_RS26370 glutamate-- GcvH: gcvH BPET_RS14065 BPET_RS15000 BPET_RS07085 34 formyltetrahydrofolate α-D-muramoyl-L- a carboxy-adenylated dihydroguanosine lspA 3-oxo-5,6- 3-oxoadipyl-CoA a 5-carboxymethylaminomethyluridine D-ala diaminononanoate desulfurase: accessory BPET_RS03070 β-alanine isomerase: BPET_RS01660 3-oxoacid CoA- 2,3-diol a 7,8-dihydrofolate L-lysyl-D-alanine alanyl-D-glutamate [(R)- cysteine ligase: [+ 2 isozymes] an [L-cysteine desulfurase]- [small subunit of 5'-triphosphate (R)-pantoate didehydrosuberyl- 3-hydroxyacyl-CoA muconate in tRNA a metal a metal BPET_RS14065 sulfurtransferase thymidylate molybdenum cofactor biosynthesis an (S-diacyl-sn- BPET_RS15000 [+ 3 isozymes] transferase subunit dehydrogenase: RS05960 dethiobiotin lipoyl]adenylate BPET_RS23825 a (6S)-5-formyltetrahydrofolate S-sulfanyl-L-cysteine molybdopterin synthase] cyclic pyranopterin a lipoprotein CoA semialdehyde dehydrogenase: 3-oxoadipyl-CoA cycloisomerase: nicotinate degradation I cation cation a [bis(guanylyl FdhD: fdhD synthase: bifunctional glyceryl)-L-cysteinyl- A: BPET_RS07210 bphB synthase: bioD lipoate--protein signal peptide BPET_RS17045 BPET_RS16990 molybdopterin) [bis-MGD BPET_RS20480 methylenetetrahydrofolate monophosphate pantoate--beta-alanine (3E,5Z)-tetradeca- (S)-3-hydroxy-(5Z) thiolase: pcaF DNA with adenine:7,8- an unstable γ-L-glutamyl- 5-formyltetrahydrofolate molybdate [apolipoprotein] [+ 4 isozymes] diphenyl a purine base 3-phenyl-2- (R)-2- a [ThiI sulfur-carrier (4S)-4-hydroxy-2- ligase A: synthase nicotinate a proteinogenic leukotriene-C4 acetyl-CoA a 3-oxoacid succinyl-CoA an alkylated DNA dihydro-8- a RNA-DNA hybrid an isocitrate citrate Ap4A RecA filament- cofactor cofactor dehydrogenase/ cyclo-ligase: ligase: BPET_RS02650 3,5-dienoyl-CoA -tetradecenoyl-CoA 3-oxoadipyl-CoA (+)-muconolactone ether 2,3-diol lesion in DNA oxopropanoate tyr hydroxyglutarate cys oxoheptanedioate L-allo-threonine a protein dethiobiotin BPET_RS26370 L-cysteine methylenetetrahydrofolate MoaC: moaC apolipoprotein N- succinyl-CoA amino acid protein]-L-cysteine ITP dehydrogenase a metal a metal chaperone]-S- chaperone]- methenyltetrahydrofolate predicted ABC acyl-CoA 3-hydroxyacyl-CoA 3-oxo-5,6- 3-oxoadipyl-CoA oxoguanine mismatch symmetrical DNA complex RS12995 a [glycine- glutathione BPET_RS24080 a thiocarboxylated molybdopterin acyltransferase: lnt RdgB/HAM1 family non- bifunctional ATP- DNA cation cation sulfanyl-L-cysteine bis-MGD S-adenosyl-L-methionine salvage II reductase [NAD(P)H]: metF cyclohydrolase FolD: folD NAD thioesterase: didehydrosuberyl- 3-oxoadipyl- muconolactone Delta- bis(5'-nucleosyl)- biotin cleavage complex synthase: [small subunit of cyclic pyranopterin phosphate (R)-pantothenate transporter an N-acyl-(S-diacyl- dehydrogenase: 4-hydroxy-2- isocitrate citrate lyase dependent repair a 5,10-methylenetetrahydrofolate a 5,10-methenyltetrahydrofolate phosphorylation and a peptide CoA CoA isomerase: catC bifunctional DNA- aspartate/ CoA synthetase: 3-oxoacid CoA- DNA-3- ribonuclease canonical purine NTP synthase 6 of molybdate: BPET_RS08855 BPET_RS17045 6-hydroxynicotinate gamma- A/G-specific low-specificity tetraphosphatase: Clp protease protein H protein] N -[(R gshB molybdopterin synthase] molybdopterin sn-glyceryl)-L- 3-oxoadipyl-CoA (2Z,4E)-2- formamidopyrimidine BPET_RS18680 IscS subfamily transferase: methyladenine HI: rnhA oxoheptanedioate pyrophosphatase: rdgB dehydrogenase subunit beta: BioB: bioB formate transhydrogenation modA modB 3-oxo-5,6- thiolase: muconolactone Delta- tyrosine/aromatic L-threonine BPET_RS02830 )-lipoyl]-L-lysine SAH type III pantothenate adenylyltransferase: cysteinyl-[lipoprotein] [+ 5 isozymes] 3-hydroxyacyl-CoA thiolase: pcaF glutamyltransferase: cysteine glycosylase: adenine aldolase: hpaI kinase/ BPET_RS11850 ATP-binding RecO: a metal a metal dehydrogenase bifunctional + dehydrosuberyl- pcaF 6-hydroxynicotinate hydroxy-6-oxo- glycosylase/ aminotransferase: glutaconate CoA- BPET_RS08325 ribonuclease nucleotide RS12980 glutathione NAD molybdopterin kinase: BPET_RS24345 mog [+ 2 isozymes] (3E,5Z)- dehydrogenase: cinnamate and 3-hydroxycinnamate isomerase: catC BPET_RS16620 desulfurase: glycosylase: aldolase: ltaE phosphatase: subunit recO 9-mercaptodethiobiotin adenosylhomocysteinase: methylenetetrahydrofolate 3-monooxygenase: 6-phenoxyhexa- DNA-(apurinic transferase: BPET_RS08330 BPET_RS09920 HII: rnhB ADP a stabilized cation cation accessory synthase: CoA degradation to 2-hydroxypentadienoate (4,5-dihydro-5- BPET_RS14085 mutY pyrophosphohydrolase: ClpA: clpA dehydrogenase/ NAD kinase: molybdopterin tetradecadienoate BPET_RS15000 succinyl-CoA BPET_RS06730 2,4-dienoate or apyrimidinic [+ 2 isozymes] BPET_RS14065 a phosphorylatedaceK RecA filament- sulfurtransferase BPET_RS24115 BPET_RS18645 (R)-4'-phosphopantothenate molybdate thiolase: pcaF acetyl-CoA succinyl-CoA oxofuran-2-yl)-acetate BPET_RS18685 [+ 4 isozymes] succinate BPET_RS22610 biotin a [lipoyl-carrier folate polyglutamylation BPET_RS07860 adenine dinucleotide 3-oxo-(5Z)- site) lyase: mutM 3-(4- a DNA containing pyruvate isocitrate acetate oxaloacetate [+ 2 isozymes] DNA complex FdhD: fdhD L-homocysteine methenyltetrahydrofolate trans-2,3- cinnamate 2,5- an alkylated semialdehyde IMP acetaldehyde synthase 6 NADP + queuosine biosynthesis I (de novo) tetradecenoyl-CoA 3-oxoadipate enol- a [ThiI sulfur- a nucleoside 5'- gly a metal a metal protein]-N -[(R cyclohydrolase FolD: folD dihydroxypyridine hydroxyphenyl) phe an α-(γ-L-glutamyl) (R)-2- nucleobase an apurinic/ an apurinic site DNA dehydrogenase a peptide RS13005 BioB: bioB molybdopterin dehydroadipyl-coA lactonase: pcaD leukotriene-D4 ala carrier protein]-S- a 2,3,4-saturated monophosphate cation cation sulfo-bis(guanylyl )-lipoyl]-L-lysine 5-methyltetrahydropteroyltriglutamate- guanylyl molybdenum molybdopterin acetyl-CoA C- a [DNA]- pyruvate -L-amino acid hydroxyglutaryl- acetate succinate apyrimidinic site adenine within DNA a tetrahydrofolate an N 10 -formyltetrahydrofolate NAD(P) molybdotransferase enoyl-CoA 3-oxoadipate enol- a 5'-phospho- a modified sulfanyl-L-cysteine 3-oxoacyl-CoA molybdopterin) - homocysteine S- cofactor biosynthesis preQ acyltransferase: 3-phenylpropionate/ 2-pyrone-6- nucleotide- 4-oxo-2-pentenal CoA biotin transhydrogenase menaquinol-7 biosynthesis 0 hydratase: 4-sulfocatechol [DNA] nucleobase cofactor MoO - bis(guanylyl molybdenum MoeA: BPET_RS18655 NADPH-dependent 7- BPET_RS00285 cinnamic acid lactonase: pcaD phenol methyltransferase: metE 2 carboxylate 3'-phosphate serine bifunctional subunit alpha: BPET_RS01660 degradation dioxygenase subunit a metal a metal methionine synthase: metH molybdopterin all-trans- cofactor) biosynthesis molybdopterin cyano-7-deazaguanine [+ 2 isozymes] 3-oxoadipate N-formylmaleamate RS05175 cytidylyl molybdenum hydroxymethyltransferase: tetrahydrofolate BPET_RS13835 [+ 3 isozymes] beta: BPET_RS18975 3-hydroxycinnamate cation cation tetrahydrofolate salvage from thioredoxin cofactor molybdenum cofactor heptaprenyl 1,4-dihydroxy- MoO - molybdotransferase reductase QueF: queF (3Z)-dodec- cofactor sulfurylation BPET_RS03070 Re/Si-specific 2 (3S)- 4-sulfocatechol a [ribosomal a peptidoglycan an N-terminal- an N-terminal- a phosphorylated a double a mismatched 5,10-methenyltetrahydrofolate met synthase/ an N 10 - guanylyltransferase 2-naphthoate molybdopterin MoeA: BPET_RS23635 preQ 3-oxoacid CoA- a sulfurated a proteinogenic an adenosine 37 3-methylmuconolactone pathway diphosphate 1 3-enoyl-CoA hydroxyadipyl- protocatechuate protein S12] ala a pimeloyl-[acp] glutathione hypoglycin A glutathione DMAPP dimer (generic) canavaninosuccinate L-methionyl-L- (3S)-citryl-CoA L-methionyl-L- isocitrate salicyl-CoA dihydrofolate NAD(P)(+) molybdopterin (2E)-3-(5,6-dihydroxycyclohexa- ATP stranded DNA IMP DNA base pair cytidylyl molybdenum formyltetrahydrofolate MobA: mobA cofactor ∆ ∆ transferase subunit [sulfur carrier] 89 amino acid in tRNA a 5,10- transhydrogenase 3, 2-enoyl- CoA 3,4-dioxygenase: benzoate degradation L-aspartate a tRNA precursor threonyl-[protein] muconolactone valyl-[protein] dehydrogenase DNA bifunctional DNA a metal a metal an oxidized methionine a 5,10- synthase: folC tRNA guanosine(34) 1,3-dien-1-yl)prop-2-enoate A: BPET_RS07210 CTP bifunctional RS23305 cofactor (trioxo) methenyltetrahydrofolate bifunctional molybdopterin- MoO -molybdopterin cofactor CoA isomerase: pcaG pcaH I (aerobic) Delta- topoisomerase salicylyl-CoA pyrimidine 5'- mismatch cation cation methylenetetrahydrofolate subunit beta: pntB 2 3-hydroxyacyl-CoA isocitrate bifunctional thioredoxin adenosyltransferase: molybdenum cofactor transglycosylase Tgt: tgt 3-sulfomuconate [+ 4 isozymes] maleamate lytic murein argininosuccinate citryl-CoA lyase: nucleotidase: tetrahydrofolate guanine bis(guanylyl tungstenpterin) BPET_RS15000 dehydrogenase: 8-amino-7- gamma- gamma- tRNA (adenosine(37)-N6) type I methionyl isomerase: catC type I methionyl (ATP- 5-hydroxylase/ repair methylenetetrahydrofolate BPET_RS24200 bifunctional guanylyltransferase a 7-aminomethyl-7- cis-3-(2-carboxyethenyl) 30S ribosomal transglycosylase: lyase: BPET_RS14585 dehydrogenase BPET_RS02165 an [MCD cofactor a tetrahydrofolate synthase/ NADPH dinucleotide (2E)-dodec- BPET_RS15000 benzoate CCA tRNA -dimethylallyltransferase muconolactone hydrolyzing) oxidoreductase: protein demethylmenaquinol-7 MobA: mobA cofactor biosynthesis 34 -3,5-cyclohexadiene-1,2- 3-oxoadipyl-CoA protein S12 oxononanoate glutamyltransferase: glutamyltransferase: BPET_RS09485 aminopeptidase: aminopeptidase: kinase/ dehydrogenase/ tetrahydrofolate dihydrofolate biosynthesis deazaguanosine in tRNA benzoate 1,2- BPET_RS19690 [+ 2 isozymes] 5'/3'- a metal a metal chaperone]-MCD SAM 2-enoyl-CoA 3-hydroxyacyl-CoA synthase: bioF BPET_RS16620 BPET_RS16620 nucleotidyltransferase: MiaA: miaA map Delta- map subunit B: gyrB BPET_RS02755 MutS: mutS methenyltetrahydrofolate thioredoxin- synthase/ diol dehydrogenase: bphB methylthiotransferase [+ 6 isozymes] argininosuccinate phosphatase: a properly IscS subfamily synthase: folC guanylylprotein B: mobB bifunctional tRNA preQ1(34) S- 3-oxoadipyl-CoA dioxygenase BPET_RS24070 isomerase: catC [+ 2 isozymes] gentisyl-CoA nucleotidase cation cation cyclohydrolase FolD: folD disulfide dihydrofolate bis(molybdenum menaquinol-8 biosynthesis enoyl-CoA dehydrogenase: RimO: rimO [+ 2 isozymes] [+ 2 isozymes] aceK matched RS06360 10 10 molybdenum GTP adenosylmethionine small subunit: benB 6 lyase: argH 4-methyl-3-oxoadipate- a negatively SurE: surE cysteine an N - an N - demethylmenaquinone bis(tungstenpterin) hydratase: BPET_RS17045 thiolase: pcaF maleate 3,5-cyclohexadiene- N -(3-methylbut- an isocitrate reductase: synthase: folC cofactor) 4-sulfomuconolactone (8S)-8-amino-7- GlcNAc-1,6- an N-terminal L- enol-lactone acetyl-CoA oxaloacetate an N-terminal supercoiled DNA DNA base pair ala ala desulfurase: formyltetrahydrofolate formyltetrahydrofolate cofactor methyltransferase/2- cofactor ribosyltransferase- 2,3-dihydroxy-trans-cinnamate a tRNA 2-en-1-yl)- a lipid II dehydrogenase inosine trxB molybdenum cofactor BPET_RS22110 1,2-diol-1-carboxylate a [ribosomal oxononanoate acyl-carrier protein α γ anhydro-MurNAc- met threonyl-[protein] met L-valyl-[protein] a 5,10- isomerase QueA: queA an -( -L-glutamyl) 37 BPET_RS14065 phosphoribosylglycinamide methoxy-6-polyprenyl- demethylmenaquinol-8 3-oxoadipyl-CoA succinyl-CoA 5'-deoxyadenosine an unsulfurated L-cysteinylglycine hypoglycin B L-cysteinylglycine containing a adenosine 3+ 3+ guanylyltransferase [+ 3 isozymes] 1,6- met protein S12]-3- -L-amino acid pentapeptide L-canavanine fumarate Fe RS11560 Fe a [cytidylyl molybdenum formyltransferase: menaquinol-9 biosynthesis methylenetetrahydrofolate menaquinol-6 biosynthesis 1,4-benzoquinol bifunctional molybdenum cofactor [sulfur carrier] 3' CCA end in tRNA acyl carrier MobA: mobA an epoxyqueuosine 34 in tRNA (S)-3- 3-oxoadipyl- dihydroxycyclohexa- methylsulfanyl- cofactor chaperone]- BPET_RS14250 methylase UbiE: ubiE demethylmenaquinone guanylyltransferase protein activation a reduced bis(guanylyl hydroxydodecanoyl-CoA CoA 2,4-diene-1- L-aspartate 89 cytidylyl molybdenum demethylmenaquinol-6 methyltransferase/2- MobA: mobA epoxyqueuosine (2Z,4E,7E)-2-hydroxy-6- fumarate thioredoxin demethylmenaquinol-9 molybdopterin) 2-maleylacetate carboxylate a tetrahydrofolate menaquinol-7 3-hydroxyacyl-CoA thiolase: Fe 3+ RS21365 Fe 3+ cofactor (sulfo-dioxo) an apo acyl- bifunctional methoxy-6-polyprenyl- reductase QueH: oxonona-2,4,7-triene-1,9-dioate bifunctional cofactor Fatty Acid and Lipid Biosynthesis dehydrogenase: pcaF dehydrogenase: a 2'- a [ribosomal 4-hydroxy- 1,4-benzoquinol bis(guanylyl BPET_RS09990 maleylacetate a 5,10- 34 an N 10 - a cytosine 32 an [L-cysteine an [amino-group carrier protein]- 4-nitrophenyl 4-nitrophenyl D-sedoheptulose a supercoiled 6-O-trans- a (1->4)- carrier protein demethylmenaquinone demethylmenaquinone BPET_RS07060 a 2-thiouridine an L-methionyl- 2-methylbutanoate carbamoyl a ribonucleoside holo-ACP methylase UbiE: ubiE BPET_RS17045 reductase: desulfurase]-S- C-terminal-γ-(L-glutamate 5- deoxyribonucleoside L-ornithine formate 4-hydroxy-L-threonine 1,7-bisphosphate protein L3]- methoxy-mycolyl- 4-methyl-2- α-D-glucan methyltransferase/2- tungstenpterin) cofactor succinyl-CoA methylenetetrahydrofolate in tRNA [initiator tRNA Met ] formyltetrahydrofolate in tRNA [DNA] triphosphate palmitate butanoate duplex DNA synthase: methyltransferase/2- 34 3-hydroxyacyl-CoA semialdehyde-2-yl)-L-glutamate 5'-triphosphate phosphate L-glutamine UvrD-helicase trehalose 6- oxoglutarate 1,4-alpha- methoxy-6-polyprenyl- menaquinol-8 palmitate biosynthesis a queuosine in tRNA BPET_RS07790 catechol sulfanyl-L-cysteine N-acetyl-gamma- 50S ribosomal methoxy-6-polyprenyl- phosphatidylglycerol cardiolipin biosynthesis I methylsalicylate degradation 4-carboxy-4- glucan predicted BPET_RS16520 1,4-benzoquinol (type II fatty acid synthase) octanoyl-[acyl-carrier dehydrogenase: [+ 2 isozymes] protein L3 domain- phosphate a holo acyl- 1,4-benzoquinol biosynthesis I (plastidic) tRNA uridine-5- acetate- glutamyl-phosphate fructose- trehalose- hydroxy-2- branching ABC methylase UbiE: ubiE protein] biosynthesis BPET_RS15000 (2Z)-2-hydroxypenta-2,4-dienoate fumarate methionyl-tRNA tRNA 2- DNA polymerase ornithine ribonucleoside low-specificity arylesterase: arylesterase: N(5)-glutamine containing urea urea carrier protein methylase UbiE: ubiE a CDP- carboxymethylaminomethyl(34) -CoA reductase: bisphosphate phosphatase: oxoadipate protein transporter (mitochondria, yeast) 3-oxoadipate 4-methylsalicylate formyltransferase: thiocytidine(32) III subunit chi: carbamoyltransferase: triphosphate L-threonine BPET_RS11250 BPET_RS11250 protein: menaquinol-6 an acetoacetyl-[acp] DHAP 5-methylsalicylate ligase: acs BPET_RS02990 aldolase class II: methyltransferase: otsB aldolase/ of urea menaquinol-9 diacylglycerol 3-oxododecanoyl-CoA synthesis enzyme MnmG: mnmG synthetase reductase: BPET_RS14230 trehalose- GlgB: glgB CDP-diacylglycerol-- BPET_RS23930 N-acetyl-gamma- BPET_RS09000 argF aldolase: ltaE BPET_RS18285 a [ribosomalprmB oxaloacetate an acetoacetyl-[acp] glycerol-3- 5-oxo-L-proline metabolism tRNA uridine-5- TtcA: ttcA trans-methoxy- 3-oxoacyl-ACP glycerol-3-phosphate 3- acetyl-CoA C- [+ 9 isozymes] BPET_RS15635 [+ 5 isozymes] a GlgE-glycogen 3-oxoacyl- phosphate 6-hydroxynicotinate 6-hydroxynicotinate carboxymethylaminomethyl(34) (2S)-2- glutamyl-phosphate protein L3]- a single mono-mycolate decarboxylase: 4-nitrophenol palmitate butanoate 5 reductase phosphatidyltransferase: a [protein] with a [protein] with acyltransferase: an N-formyl- reductase: argC 4-nitrophenol N -methyl- ligK ACP dehydrogenase: 3-monooxygenase: 3-monooxygenase: synthesis GTPase MnmE: mnmE 32 an [L-cysteine methylbutanoyl- diphosphate an [amino-group carrier protein]- glycolaldehyde D-erythrose stranded DNA FabG: fabG 1-(3-sn- pgsA an N-terminal an N-terminal BPET_RS17320 L-methionyl- a tetrahydrofolate a 2-thiocytosine AMP a 2'- DHAP reductase BPET_RS23790 BPET_RS06730 BPET_RS06730 desulfurase]- CoA C-terminal-γ-(5-phospho- L-citrulline gly 4-phosphate L-glutamine pyruvate 3-oxoacyl-ACP sn-glycerol phosphatidyl) L-glutamine L-glutamate [initiator tRNA met ] in tRNA [DNA] deoxyribonucleoside FabG: fabG [+ 2 isozymes] L-cysteine L-glutamyl)-L-glutamate 3-phosphate a 5-aminomethyl-2- 5'-triphosphate reductase -sn-glycerol a 7,8-dihydrofolate 3-oxoacyl- decanoyl-CoA 4-methylcatechol thiouridine 34 in tRNA FabG: fabG glycerol-3- 3-phosphate superpathway of L- Amino Acid Biosynthesis ACP L-arginine biosynthesis I (via L-ornithine) L-lysine biosynthesis I glycine biosynthesis II phosphate 1-O- phosphatidylglycerophosphatase L-histidine biosynthesis superpathway of branched chain amino acid biosynthesis L-arginine biosynthesis II (acetyl cycle) glycine a (3R)-3- reductase a [protein] with acyl-CoA isoleucine biosynthesis I acyltransferase A: BPET_RS20065 β α a 2'- biosynthesis IV hydroxybutanoyl-[acp] a (3R)-3-FabG: fabG γ-L-glutamyl dehydrogenase: UDP-N-acetyl-α-D-muramoyl- ADP-L-glycero- - -Kdo-(2->4)- a peptide with guanosine 2251 D-sedoheptulose (2Z,4E)-2- a glucosylated an N-terminal 5- di-trans,octa-cis- 3-aci- 1-methyl-dAMP a reduced c- nitrite an N-acylated- a ribonucleoside meso-tartrate (2E,6E)-farnesyl a [glycine-cleavage PlsY: plsY an L-1- 5-phosphate glutathione BPET_RS04300 L-alanyl-γ-D-glutamyl-L- D-manno-heptose α-Kdo-(2->6)- 2-oxoglutarate deoxyribonucleoside an N-terminal aci-nitroethane 1-phosphate hydroxyhexa- repressor LexA glycogenin 6 hydroxybutanoyl- nitropropanoate [DNA] in 23S rRNA diphosphate oxaloacetate PRPP glu pyruvate asp N-acetylglutamyl-phosphate complex H protein] N - 3-hydroxyacyl- a 1-acyl-sn oxo-L-proline nitrate reduction Inorganic Nutrient Metabolism undecaprenyl phosphate type cytochrome D-amino acid diphosphate 1,4-alpha- thr [acp] phosphatidyl- [+ 27 isozymes] lysyl-D-alanyl-D-alanine lipid IV (E. coli) 5'-triphosphate Xaa-L-proline 23S rRNA ribonucleotide- 2,4-dienedioate tartrate aspartate/ thr ACP dehydratase nitrate reduction V (assimilatory) selenate reduction dimethyl sulfide assimilatory A 4-oxalocrotonate transcriptional presqualene aspartate kinase: aminomethyldihydrolipoyl- 3-hydroxyacyl- -glycerol 3- sn-glycerol I (denitrification) (guanosine(2251) diphosphate dehydrogenase: glucan tyrosine/aromatic ATP acetolactate low-specificity FabZ: fabZ degradation sulfate reduction III nitronate DNA oxidative nitronate fructose- tautomerase: repressor diphosphate bifunctional threonine/serine BPET_RS17500 L-lysine ACP phosphate cardiolipin (2E)-dec-2-enoyl-CoA lipopolysaccharide -2'-O)- reductase: BPET_RS15580 branching aminotransferase: phosphoribosyltransferase synthase: N-acetyl-gamma- L-threonine glycine II (oxidation) phospho-N- demethylase cytochrome DNA polymerase leucyl D-aminoacylase: BPET_RS15860 synthase glutamate N- dehydratase: aminomethyl- 1-acyl-sn-glycerol- synthase nitrate nitrate selenate heptosyltransferase monooxygenase: monooxygenase: bisphosphate LexA: lexA protein BPET_RS08140 bifunctional glutamate glutamyl-phosphate aldolase: ltaE cleavage dehydratase sulfate acetylmuramoyl- CBB3: III subunit chi: aminopeptidase: BPET_RS08000 methyltransferase BPET_RS02920 tartrate HpnD: hpnD BPET_RS14085 regulatory subunit: acetyltransferase/ L-aspartyl-4-phosphate transferring a (2E)-but-2-enoyl-[acp] 3-phosphate enoyl-CoA sulfate I: waaC BPET_RS05740 AlkB: alkB BPET_RS05740 aldolase class II: 4-oxalocrotonate GlgB: glgB BPET_RS24720 reductase: system gly FabZ: fabZ ClsB: clsB 5-oxo-L-proline respiratory dimethyl sulfide pentapeptide- BPET_RS20640 BPET_RS09000 BPET_RS09005 RlmB: rlmB BPET_RS02925 dehydrogenase: cleaved BPET_RS10300 ilvN N-acetyltransferase/ gly hydratase: respiratory sulfate [+ 2 isozymes] 2-O- a 2'- BPET_RS18285 squalene asp amino-acid [+ 2 isozymes] glycine acyltransferase: nitrate reductase: adenylyltransferase [+ 8 isozymes] [+ 8 isozymes] tautomerase: repressor LexA amino-acid BPET_RS02990 protein enoyl-ACP cardiolipin adenylyltransferase transferase: [+ 8 isozymes] 2251 BPET_RS22715 a glycogen ATP acetyltransferase [+ 2 isozymes] aspartate- dehydrogenase: a (2E)-but- BPET_RS22210 5-oxoprolinase BPET_RS22110 nitrate reductase: subunit CysD: cysD heptosyl- methylguanosine deoxyribonucleoside BPET_RS16730 synthase (2Z)-2-aminobut- GcvH: gcvH synthase narI narH BPET_RS03500 2-hydroxy-3- semialdehyde acetyltransferase N-acetyl-gamma- reductase 2-enoyl-[acp] BPET_RS25250 subunit CysD: cysD Kdo -lipid IV formaldehyde succinate a peptide with in 23S rRNA 5'-diphosphate (3E)-2-oxohex- HpnC: hpnC phosphoribosyltransferase: ArgJ: argJ gcvP [+ 2 isozymes] subunit [+ 3 isozymes] BPET_RS19420 sulfate assimilatory 2 A aspartate kinase: 2-enoate (S)-2-acetolactate ArgJ: argJ glutamyl-phosphate FabI: fabI ClsB: clsB dimethyl sulfoxide ADP [unspecified dAMP an oxidized c- nitric oxide a proteinogenic a carboxylate D-erythrose 3-enedioate oxosuccinate BPET_RS00695 dehydrogenase: acetylglutamate a [glycine-cleavage a [glycine-cleavage[+ 2 isozymes] a 1,2-diacyl- PxpB: pxpB narH narI sulfate 3-oxopropanoate nitrite an N-terminal a D-amino acid acetaldehyde nitrite DHAP squalene BPET_RS17500 amino-acid N- [+ 2 isozymes] enoyl-ACP (S)-3- respiratory adenylyltransferase: sulfate reduction IV degradation type cytochrome amino acid reductase: argC 6 6 undecaprenyl-diphospho-N- [DNA] ketol-acid asd amino-acid N- kinase: argB complex H protein] N complex H protein] N reductase sn-glycerol Ptd Gro respiratory adenylyltransferase: UMP L-proline 1-(5-phospho- acetyltransferase: a butanoyl-[acp] 2 5-oxoprolinase: hydroxydecanoyl-CoA BPET_RS09705 products] acetyltransferase: argA 3-phosphate nitrate reductase: adenosine 5'- BPET_RS09705 acetylmuramoyl-L-alanyl-γ-D- L-aspartyl- β-D-ribosyl)-ATP argA reductoisomerase: L-aspartate 4- -dihydrolipoyl-L-lysine -[(R)-lipoyl]-L-lysine FabI: fabI BPET_RS11345 3-hydroxyacyl-CoA nitrate reductase: sulfate glu N-acetyl-L-glutamate N-acetyl-L-glutamate 5-semialdehyde phosphatidate BPET_RS25250 phosphoselenate APS glutamyl-L-lysyl- D-alanyl-D-alanine 4-phosphate ilvC semialdehyde beta-ketoacyl- [+ 5 isozymes] dehydrogenase: narI narH sulfate phosphoribosyl- N-acetyl-L- 2-iminobutanoate cytidylyltransferase: narH narI (2R)-2,3- ACP synthase glu BPET_RS17045 nitrite BPET_RS19420 dimethyl sulfone adenylyltransferase aspartate- ATP 4-hydroxy- acetylornithine phosphoadenylyl- glutamate dihydroxy-3- gln a butanoyl-[acp] BPET_RS12785 subunit CysD: cysD UDP-N-acetyl-α-D- ADP-L-glycero-β- α-D-Kdo-(2->4) 34 N-acetyl-β-D- a peptide with an [amino-group carrier (2S,3S)-2,3- 6-O-cis-methoxy- a protein-L- diphosphatase: transaminase: II: fabF 3-hydroxyacyl-CoA sulfate reductase: di-trans,octa-cis- 1 a [protein]-S- a uridine a [DNA]-3'- a hypoxanthine a ribonucleoside α-amylose semialdehyde methylbutanoate tetrahydrodipicolinate nitrite dimethylsulfone muramoyl-L-alanyl-γ-D- D-manno-heptose α 2-oxoglutarate N -methyladenine protein]-C-terminal-γ- dihydroxy-5- RNA L-tartrate mycolyl-trehalose aminomethyl- L-cysteine biosynthesis I a CDP- fatty acid biosynthesis sulfate - -D-Kdo-(2->6) DL-allothreonine sulfanyl-L-cysteine in tRNA hydroxyl in DNA glucosaminyl-(1 an N-terminal 5'-monophosphate methionine- dehydrogenase: BPET_RS00655 acetylglutamate synthase: bifunctional glutamate BPET_RS00210 dehydrogenase: monooxygenase: BPET_RS09695 undecaprenyl phosphate 1,4-alpha- dihydroxy-acid glutamine-hydrolyzing transferring a 3-oxohexanoyl-[acp] beta- diacylglycerol initiation (type II) selenite adenylyltransferase: glutamyl-L-lysyl-D-alanine -lipid A (E. coli) -> 4)-N-acetyl- L-proline (L-glutamyl)-L-glutamate 5'/3'-nucleotidase oxohexanedioate tartrate 6-phosphate (R)-S-oxide asd 1-(5-phospho-β- kinase: argB BPET_RS21160 N-acetyltransferase/ BPET_RS15000 nitrite reductase: ssuD trehalose- peptide- glucan dehydratase: carbamoyl-phosphate glycine ketoacyl- CDP-diacylglycerol-- BPET_RS09705 sulfite β-D-muramate acetylglutamate SurE: surE dehydrogenase: D-ribosyl)-AMP 2-oxobutanoate [+ 2 isozymes] amino-acid ser BPET_RS18480 lipopolysaccharide DNA oxidative tRNA 2- exodeoxyribonuclease DNA-deoxyinosine phosphatase: methionine branching L-aspartate 4- N-acetylglutamyl- ilvD synthase: carB carA dehydrogenase: 3-oxoacyl-ACP ACP glycerol-3-phosphate 3- acetyl-CoA N 6 -L-threonylcarbamoyladenosine 37 3-oxodecanoyl-CoA nitrite APS phospho-N- serine kinase: argB 2-dehydro-3- ribonuclease BPET_RS15580 (2S,4S)-4- acetyltransferase methanesulfinate heptosyltransferase demethylase thiouridine(34) III: xth glycosylase: prolyl pyrimidine 5'- otsB (R)-S-oxide semialdehyde phosphoribosyl- phosphate L-methionine biosynthesis III gcvP reductase synthase acetyl-CoA assimilatory sulfite PH: rph tartrate protein acetolactate dihydroxy-acid hydroxy-2,3,4,5- phosphatidyltransferase: -modified tRNA biosynthesis ammonium acetylmuramoyl- AlkB: alkB hydroxymethyltransferase: BPET_RS14760 beta-N- aminopeptidase: pip an [amino-group carrier nucleotidase: deoxyglucarate trehalose- reductase AMP carbamoyl phosphate L-ornithine ArgJ: argJ serine II: fabF carboxylase cytochrome reductase (NADPH) I: waaC synthase exodeoxyribonuclease GlgB: glgB homoserine synthase: dehydratase: [+ 6 isozymes] FabG: fabG pgsA acetyl-CoA C- urea cycle pentapeptide- BPET_RS03070 acetylhexosaminidase: protein]-C-terminal- BPET_RS02165 aldolase: garL dehydrogenase: cis-methoxy- cyclohydrolase: N-acetyl- tetrahydrodipicolinate acetyltransferase: CBB3: selenodiglutathione flavoprotein subunit: MnmA: mnmA III: xth MsrB: msrB BPET_RS08140 ilvD 1-(3-sn- carboxyltransferase acyltransferase: transferase: nagZ γ BPET_RS22715 mono-mycolate amylopectin dehydrogenase: gamma-glutamyl- 4-hydroxy- BPET_RS17285 3-oxoacyl-ACP a 3-oxohexanoyl- thr BPET_RS20640 heptosyl- -(5-phospho-L- a ribonucleoside [+ 2 isozymes] hisI N-acetyl-L-ornithine L-homoserine phosphatidyl) subunit beta: BPET_RS17320 type I glutamate BPET_RS15435 an apurinic site a nucleoside 2-hydroxy-3- BPET_RS13910 phosphate ilvN 3-methyl-2- tetrahydrodipicolinate reductase [acp] BPET_RS03500 Kdo -lipid A formaldehyde succinate glutamyl)-L-glutamate RNA a [protein]-L- 1-(5-phospho-β-D-ribosyl)- BPET_RS08845 threonylcarbamoyl- arg ADP 2 34 a 2'- tartronate diphosphate oxosuccinate FabG: fabG -sn-glycerol [+ 2 isozymes] glutamate- synthase methanesulfonate PAPS oxidoreductase: adenine acetaldehyde a [protein]- a 2-thiouridine a [DNA]-3'- within DNA hypoxanthine a peptide pro pyruvate methionine reductase: [+ 2 isozymes] oxobutanoate reductase: dapB homoserine O- O-acetyl-L-serine AMP synthase: nitric oxide gly N-acetyl-D- semialdehyde L-homoserine 5-[(5-phosphoribosylamino) hydrogen sulfide 3-oxoacyl- 3-phosphate malonyl-CoA -ammonia subunit alpha: BPET_RS16095 L-cysteine in tRNA hydroxyl deoxyribonucleoside GlcNAc BPET_RS02990 (S)-2-aceto-2- a (3R)-3- BPET_RS17645 octanoyl-CoA phosphoadenylyl- undecaprenyl-diphospho-N UMP muramate methylideneamino]imidazole- (S)-2,3,4,5- ornithine acetyltransferase: ACP nitric oxide ligase: glnA BPET_RS00765 FMNH2-dependent 5'-monophosphate hydroxybutanoate 2-isopropylmalate branched-chain phosphatidylglycerophosphatase ACP S- glutathioselenol sulfate reductase: hydrogen sulfide -acetylmuramoyl-L-alanyl-γ- homoserine 4-carboxamide N-acetyl- tetrahydrodipicolinate carbamoyltransferase: BPET_RS02085 hydroxyhexanoyl-[acp] reductase threonylcarbamoyl- reductase: alkanesulfonate ketol-acid synthase: leuA amino acid cysteine synthase A: BPET_RS20065 malonyltransferase: acyl-CoA NADP-specific BPET_RS09695 D-glutamyl-L-lysyl- D-alanine kinase: 1-(5-phosphoribosyl)-5- gamma- 2,3,4,5- argF O-acetyl-L- 3-hydroxyacyl- FabG: fabG AMP synthase: BPET_RS20560 monooxygenase: argininosuccinate reductoisomerase: transaminase: CysM: cysM an L-1- fabD dehydrogenase: glutamate BPET_RS15420 [(5- phosphoribosylamino) glutamyl- tetrahydropyridine- hydrogen sulfide ACP dehydratase 3-oxoacyl- (L-threonylcarbamoyl)BPET_RS18250 gln ssuD arginase: ammonium (2S)-2- BPET_RS04645 homoserine phosphatidyl- BPET_RS04300 dehydrogenase: sulfite lyase: methylideneamino]imidazole-4- phosphate ilvC 2,6-dicarboxylate N- nitrous oxide UDP-N-acetyl- undecaprenyldiphospho- a 3-methyl-branched (S)-5-amino-3- (1S,2R)-1- 3-(N-morpholino) a guanine 527 a siderophore- 6-O-trans-keto- a (1->4)- FabZ: fabZ ACP adenylate BPET_RS19690 rocF 2-oxoglutarate 3-methylbutanoate 2-oxoglutarate 1-methyl-dATP acetyl-CoA a peptide with a γ [DNA] D-glucopyranose O-phospho- carboxamide isomerase: hisA isopropylmalate sn-glycerol a malonyl-[acp] [+ 27 isozymes] gdhA sulfite glutamine- α-D-glucosamine N-acetylmuramoyl-L- 2,3,4-saturated oxohexanoate ser C-(indol-3- propanesulfonate -L-glutamyl-(S)- gly mycolyl-trehalose ser α-D-glucan reductase: (R)-2,3-dihydroxy- branched-chain succinyltransferase: cys reductase hydrogen selenide leader sequence in 16S rRNA GTP bound Fe(III) L-homoserine 3-isopropylmalate bifunctional tRNA TAT-dependent argininosuccinate γ fatty acyl-CoA yl)glycerol 2-aminobutanoate 16S rRNA DNA polymerase glucose 1- 6-phosphate 1,4-alpha- argC 3-methylpentanoate amino acid dapD a (2E)-hex-2-enoyl-[acp] FabG: fabG hydrolyzing alanyl- -D-glutamyl-meso threonine/serine phosphoribulosylformimino- ketoacyl-ACP (adenosine(37)-N6)- (2E)-oct-2-enoyl-CoA nitrous-oxide L-arginino- lyase: argH III subunit chi: dehydrogenase: trehalose- glucan threonine N-acetyl-L- dehydratase: aminotransferase: a (3R)-3- carbamoyl- -2,6-diaminopimeloyl- 3-phosphate (guanine(527)-N(7) bifunctional AICAR-phosphate dihydroxy-acid N-succinyl-2-amino- L-citrulline glu L-ornithine phytanoyl-CoA acetate- DNA oxidative 3-keto-5- FMNH2-dependent phosphatase: dehydratase: synthase: BPET_RS08475 synthase III: threonylcarbamoyltransferase reductase: nosZ succinate D-alanyl-D-alanine signal glutathione )-methyltransferase BPET_RS09000 diguanylate cyclase/ BPET_RS01940 ferric reductase: branching glutamate 5- dehydratase: BPET_RS08740 enoyl-ACP hydroxyhexanoyl- enoyl-CoA hydrogen sulfide phosphate -CoA demethylase aminohexanoate alkanesulfonate BPET_RS24720 BPET_RS08480 6-ketopimelate L-homocysteine BPET_RS08915 complex dimerization subunit dioxygenase: tryptophan RsmG: rsmG [+ 2 isozymes] BPET_RS00490 otsB protein BPET_RS13905 semialdehyde ilvD Aromatic Compound Biosynthesis reductase [acp] hydratase: N synthase: peptidase synthase: an N 7 - a 2'- phosphodiesterase: glucose 1- trehalose- imidazole succinyldiaminopimelate stearate biosynthesis type 1 TsaB/ribosomal protein 2 undecaprenyldiphospho- BPET_RS22845 ligase: acs AlkB: alkB cleavage protein: synthase: trpB monooxygenase: L-serine GlgB: glgB acetylornithine [+ 2 isozymes] argininosuccinate argininosuccinate I: lepB 527 BPET_RS06895 dehydrogenase: FabI: fabI 3-hydroxyacyl- an acetoacetyl-[acp] BPET_RS22110 two-component alkanesulfonate monooxygenase carB carA BPET_RS19865 ssuD gshB methylguanine deoxyribonucleoside trans-keto- thr glycerol dihydroxy-acid val transaminase: II (bacteria and plants) alanine acetyltransferase synthase: argG muramoylpentapeptide beta-N- BPET_RS08840 ammonia-lyase: transaminase: synthase: argG 5-methyltetrahydropteroyltriglutamate- L-ornithine degradation chorismate biosynthesis I ACP [+ 3 isozymes] in 16S rRNA 5'-monophosphate diguanylate cyclase: BPET_RS04495 mono-mycolate starch phosphate dehydratase: 2-isopropylmaleate BPET_RS14180 methionine RimI: BPET_RS08655 carbamoyl acetylglucosaminyltransferase: a 2-hydroxy-3-methyl- BPET_RS15815 BPET_RS00210 - homocysteine S- I (L-proline biosynthesis) dipicolinate biosynthesis a hexanoyl-[acp] dehydratase cyanate degradation 3-methylbutanoyl- D-glucono- Fe 2+ a siderophore ilvD superpathway (S)-3- an alkylsulfonate FMNH phosphate succinate diphosphate formaldehyde succinate D-glyceraldehyde BPET_RS18365 threonine/serine synthase: N-succinyl-L,L-2,6- L-arginino-succinate synthase: methyltransferase: metE a palmitoyl-[acp] [+ 2 isozymes] 2 thiosulfate oxidation III (multienzyme complex) ornithine murG branched 2,3,4- CoA 1,5-lactone pyruvate N-acetyl-L- D-erythrose FabZ: fabZ AMP dATP (S)-3- 3-(N-morpholino) a leader sequence a peptide ophthalmate c-di-GMP hisF hisH (3S)-3-methyl-2- 3-isopropylmalate of L-threonine metH beta-ketoacyl- beta-ketoacyl- an N 6 -L- hydroxyoctanoyl-CoA carbamoyltransferase: saturated fatty acyl-CoA acetoacetate 3-phosphate trp sulfite dehydratase: hydrogencarbonate diaminopimelate methionine L-ornithine 4-phosphate aminobutanoyl-CoA propanal ornithine dehydratase: argininosuccinate asp a (2E)-hex- 37 CO oxopentanoate biosynthesis 3-deoxy-7- ACP synthase ACP synthase threonylcarbamoyladenine 3-hydroxyacyl-CoA 2 carbonic anhydrase: argF lipid II (meso UDP BPET_RS24720 succinyl- synthase: ornithine a [SoxY protein]-L-cysteine D-erythro-1- acetylornithine BPET_RS08475 lyase: BPET_RS19690 phosphoheptulonate 2-enoyl-[acp] II: fabF dehydrogenase: BPET_RS25280 diaminopimelate containing) [+ 2 isozymes] glutamine- branched-chain diaminopimelate oxaloacetate metH cyclodeaminase: aspartate kinase: II: fabF a 3-oxooctadecanoyl- phosphatidylserine and in tRNA AICAR (imidazol-4- deacetylase: BPET_RS08480 argininosuccinate synthase AroG: aroG BPET_RS17045 L-citrulline (2Z)-2-aminobut- hydrolyzing amino acid desuccinylase: aspartate/ superpathway of L- BPET_RS03785 BPET_RS17500 enoyl-ACP [acp] phosphatidylethanolamine carbonic anhydrase: yl)-glycerol argE [+ 2 isozymes] tyrosine/aromatic lyase: argH asparagine biosynthesis 3-deoxy-7- L-aspartyl- a 3-oxooctanoyl-[acp] reductase biosynthesis I 3-hydroxyacyl-CoA BPET_RS22995 CDP-4-dehydro-3,6- 2-enoate carbamoyl- transaminase: dapE met pro a nascent peptidoglycan an [HPr]- phosphoenol N-acetyl-D-glucosaminyl-N- a [lipoyl-carrier a guanine 966 a [protein]-α- 3-phosphate (2R,3S)-3- FabI: fabI 3-oxoacyl- dehydrogenase: an acyl-[acyl- glycyl-glycine glutathione 2-oxoglutarate methyl red (R)-lipoate α D-glucopyranose phenyl acetate urea-1-carboxylate an unfolded acetylornithine phosphate BPET_RS04645 aminotransferase: phosphoheptulonate 4-phosphate (meso-DAP containing) L-histidine pyruvate acetylmuramoyl-L-alanyl-D-glutamyl- D-ala a PII protein protein]-L-lysine in 16S rRNA dideoxy- -D-glucose cys L-glutamate imidazoleglycerol- arg 3-oxoacyl-ACP ACP a CDP-diacylglycerol periplasmic disulfide bond formation NADPH- carrier protein] CDP-6-deoxy- protein deacetylase: synthase: isopropylmalate L,L-diaminopimelate BPET_RS14085 asp synthase: [+ 5 isozymes] BPET_RS15000 FMNH2-dependent a [SoxY protein]-S- 6-carboxy-L-lysyl-D-alanine UTP 16S rRNA glucose 1- phosphate branched-chain aspartate- reductase reductase CDP-diacylglycerol--serine carbamate hydrogencarbonate dependent cysteine chemotaxis argE carB carA 3-isopropylmalate BPET_RS14825 alkanesulfonate sulfosulfanyl-L-cysteine (guanine(966)-N(2) delta-3,4- dehydrogenase: dehydratase amino acid asp 3-deoxy- semialdehyde FabG: fabG O-phosphatidyltransferase: a [DsbB protein] a [DsbA protein] two reduced 3-oxooctanoyl-CoA FMN lytic murein phosphoenolpyruvate- dioxygenase: protein CheR: allophanate chaperonin dehydrogenase: a hexanoyl-[acp] FabG: fabG an electron- monooxygenase: taurine degradation IV gamma- FMN-dependent lipoate--protein glucoseen BPET_RS04495 arylesterase: 2-iminobutanoate aminotransferase: diaminopimelate D-arabino- pssA with reduced L- carrying a cysteine residues cyanase: cynS reductase: transglycosylase: phosphate D-amino acid [protein-PII] )-methyltransferase BPET_RS17475 BPET_RS10680 GroEL: groL HisB: hisB L-ornithine carbamoyl L-tryptophan biosynthesis dehydrogenase: 3-oxoacyl-ACP a 3-sn-phosphatidyl- cytochrome c: -protein glutamyltransferase: peptidase S66: NADH- ligase A: reductase: hydrolase: leuB epimerase: dapF asparagine asparagine 3-oxoacyl- transfer quinone ssuD 2 RsmD: rsmD glucose 1- BPET_RS11250 a [protein]-L- 3-(imidazol-4- phosphate BPET_RS08740 aspartate kinase: heptulosonate asd cysteine residues disulfide bond in a protein acetyl-CoA C- ssuE BPET_RS07930 BPET_RS09485 phosphotransferase: ptsP acyltransferase aminotransferase: uridylyltransferase: an N - cysteine atzF reductase beta- ACP L-serine BPET_RS16620 BPET_RS12960 azoreductase: BPET_RS26370 BPET_RS10105 5 (2S)-2-isopropyl- synthase synthase 7-phosphate PlsX: plsX BPET_RS24325 BPET_RS12820 966 dehydrogenase: glutamate-O yl)-2-oxopropyl BPET_RS17500 ketoacyl- acyltransferase: [+ 9 isozymes] taurine [+ 5 isozymes] BPET_RS03350 methylguanine CDP-4-dehydro-6- dioxygenase: a protein (glutamine- (glutamine- L-aspartate 4- FabG: fabG reductase phosphatidylserine [+ 2 isozymes] BPET_RS01940 -methyl-ester phosphate ile 3-oxosuccinate meso-diaminopimelate gln L-phenylalanine 3-dehydroquinate BPET_RS17320 CO alpha-ketoglutarate- in 16S rRNA deoxy-α-D-glucose BPET_RS03570 ornithine chorismate semialdehyde ACP FabG: fabG 2 cyanate an [HPr protein]- a [lipoyl-carrier D-glucono- histidinol- L-aspartyl- biosynthesis I hydrolyzing) hydrolyzing) a (3R)-3- decarboxylase: psd a [SoxY protein]-S- a [SoxY protein]-S dependent taurine π N-acetyl-D-glucosaminyl-N- acetate phenol carbamoyltransferase: synthase: aroB synthase a (3R)-3- [+ 2 isozymes] a mature peptidoglycan a nascent peptidoglycan N -phospho- pyruvate 6 3-sulfino-L-alanine ammonium CO 2-oxobutanoate : asnB : asnB disulfanyl-L-cysteine -sulfanyl-L-cysteine γ acetylmuramoyl-L-alanyl-D- pyruvate N,N-dimethyl-1,4- a uridylylated protein]-N -[(R 1,5-lactone 2 phosphate diaminopimelate 4-phosphate 4-hydroxy- hydroxyoctanoyl-[acp] an L-1- dioxygenase: γ acyl-carrier protein an acyl phosphate -L-glutamyl- D-ala D-glt anthranilate argF II: fabF hydroxyoctadecanoyl- hexanoyl-CoA with (L-alanyl- -D-glutamyl- (meso-DAP containing) L-histidine L-cysteinylglycine PII protein )-lipoyl]-L-lysine transaminase: anthranilate synthase chorismate asparagine asparagine 3-dehydroquinate tetrahydrodipicolinate BPET_RS05575 glycylglycine glutamyl-6-carboxy-L-lysine phenylenediamine 4-methyl-2- decarboxylase: lysA aspartate- 3-hydroxyacyl- [acp] phosphatidylethanolamine meso-2,6-diaminopimeloyl- with GlcNAc terminus acetolactate BPET_RS00685 component I: chorismate synthase: a 3-oxooctanoyl- oxopentanoate synthase synthase ACP dehydratase 3-hydroxyacyl- acyl-CoA alpha-ketoglutarate- D-alanine) tetrapeptide synthase: semialdehyde type II 3- BPET_RS21160 [acp] an aldehyde FMN [+ 2 isozymes] asp L-citrulline superpathway of L-serine L-proline lys BPET_RS01595 mutase: (glutamine- (glutamine- FabZ: fabZ ACP dehydrogenase: polyphosphate metabolism dependent taurine BPET_RS08140 branched-chain dehydrogenase: BPET_RS14225 dehydroquinate L-histidinol and glycine biosynthesis I biosynthesis I hydrolyzing) hydrolyzing) [+ 2 isozymes] 3-oxoacyl- dehydratase BPET_RS04300 dioxygenase: ilvN amino acid asd dehydratase: aroQ (2S,4S)-4- a [2-oxoglutarate- 34 a thiocarboxylated all-trans- an N-terminal- 46 4-bromo-2,3- (3R,5S)-3- (from L-glutamate) chorismate : asnB : asnB a (2E)-oct-2-enoyl-[acp] ACP a [SoxY protein]-S-(2- BPET_RS22645 an N-terminal L- an L-arginyl- a ferrocytochrome a uridine a protein with a guanine a ribonucleoside a [protein]- [+ 2 isozymes] phosphate anthranilate PRPP FabZ: fabZ [+ 27 isozymes] long chain a sulfurated stearoyl-CoA [SAMP] C- glutathione hexaprenyl isethionate L-methionyl-L- O-ureido-L- dihydrodiol- a phenyl acetate selenide transaminase: L-aspartate 4- hydroxy-2,3,4,5- acyl-CoA hydrolysis SAM dehydrogenase aspartyl-[protein] Arg in tRNA 4-aminobenzoate asp in tRNA a protein L-histidine hydroxy-1- argininosuccinate 3-phospho-D-glycerate mutase: 3-dehydroshikimate reductase sulfodisulfanyl)-L-cysteine 2-aminoacetaldehyde [sulfur carrier] [tRNA ] b a disulfide bond triphosphate (S)-2-aceto-2- BPET_RS04645 tetrahydrodipicolinate a (2E)-octadec- polyphosphate E2 protein] N 6 - 5 terminal glycine diphosphate cysteinyl-[protein] homoserine tRNA ribonucleoside diphenyl ether pyrroline-5- selenide, synthase: argG phosphoglycerate glu semialdehyde BPET_RS02565 enoyl-ACP FabG: fabG DsbA family (2E)-hexenoyl-CoA cis-2,3- D-alanyl-D-alanine- histidine kinase: hydroxybutanoate 2-enoyl-[acp] a 2,3,4-saturated octanoyl-L-lysine (guanosine(46)-N7) triphosphate carboxylatepyrroline-5- water dehydrogenase: branched-chain glutamate homoserine anthranilate prephenate asn asn shikimate reductase oxidoreductase: FMNH2-dependent dihydrobiphenyl- carboxypeptidase/ BPET_RS01290 L-arginine 3-oxoacyl- fatty acyl CoA tRNA 2- -methyltransferase reductase: arylesterase: carboxylate dikinase ketol-acid L-arginino- BPET_RS19640 amino acid 5-kinase: phosphoribosyltransferase: trpD dehydrogenase: FabI: fabI enoyl-ACP acyl-CoA enoyl-CoA arginyltransferase: 4-hydroxybenzoate type I methionyl 2,3-diol endopeptidase [+ 2 isozymes] degradation I dehydrogenase: ACP a [DsbB protein] a [DsbA protein] BPET_RS08300 polyphosphate lipoyl aminotransferase: thiouridine(34) glutaredoxin alkanesulfonate argininosuccinate TrmB: trmB BPET_RS11250 a [protein]- SelD: selD reductoisomerase: histidinol succinate aminotransferase: BPET_RS23690 prephenate aroE reductase an electron- an intra- hydratase: exopolyphosphatase: ppx BPET_RS04700 octaprenyltransferase: aminopeptidase: an N 7 - a 2'- BPET_RS15635 dehydrogenase: AmpH: ampH reductase: [+ 2 isozymes] γ-L-glutamyl (arginase pathway) BPET_RS13910 dipicolinate reductase thioesterase: carrying a with reduced L- kinase 1: ppk1 synthase: BPET_RS14235 3: grxC monooxygenase: synthase: argG dehydratase: an octanoyl-[acp] BPET_RS22110 synthase ubiA map 46 N-phospho- BPET_RS11740 ilvC argininosuccinate 3-phosphooxypyruvate BPET_RS08740 FabI: fabI BPET_RS08855 transfer quinol protein disulfide ssuD methylguanine deoxyribonucleoside 4-bromo-2,3-bphB a peptide selenophosphate histidinol 5-phosphate N-(5-phosphoribosyl)-anthranilate shikimate FabG: fabG disulfide bond cysteine residues lipA MnmA: mnmA L-histidine Hyp L-homoserine pheA [+ 3 isozymes] an N-terminal in tRNA 5'-triphosphate dihydroxydiphenyl (R)-2,3-dihydroxy- dehydrogenase: lyase: arg a (3R)-3- [+ 5 isozymes] Carboxylate Degradation 3-phosphoserine/ glutamate-5- beta-ketoacyl- a stearoyl-[acp] a 2,3,4-saturated Arg a protein with acetate a phenol 3-methylpentanoate BPET_RS19690 leu 3-phenyl-2- hydroxyoctanoyl- (S)-3- a [2-oxoglutarate a tRNA L-arginiyl-L- 3-all trans- ether arginase: phosphoribosylanthranilate ammonia shikimate kinase: a ferricytochrome oleoyl-CoA 34 GSSG an N-terminal L- canavaninosuccinate hisD phosphohydroxythreonine semialdehyde homoserine oxopropanoate ACP synthase fatty acid long chain 5'-deoxyadenosine an unsulfurated a [SAMP] C- a 2-thiouridine reduced L- hexaprenyl-4- glycolaldehyde dihydroxy-acid argininosuccinate isomerase: BPET_RS14405 assimilation cycle III [acp] hydroxyhexanoyl-CoA met dehydrogenase aspartyl-[protein] b sulfite met cysteinyl-[protein] rocF BPET_RS24845 II: fabF polyphosphate 2-methylcitrate cycle II 5 transaminase: serC dehydrogenase: kinase: 6 [sulfur carrier] terminal glycine in tRNA cysteine residues aminobenzoate dehydratase: histidinal lyase: argH 1-(2-carboxyphenylamino)-1- aspartate/ 3-hydroxyacyl- Pentose Phosphate Pathways N-end rule pathway I (prokaryotic) 3-hydroxyacyl-CoA 2-methylcitrate cycle I D-glucosaminate degradation citrate degradation mevalonate degradation acetate E2 protein] N BPET_RS16860 L-ornithine BPET_RS15420 ilvD tyrosine/aromatic shikimate 3- ACP long-chain fatty dehydrogenase: conversion -lipoyl-L-lysine histidinol O-phospho-L-serine deoxy-D-ribulose 5-phosphate glu a 3-oxodecanoyl-[acp] an acetyl-holo arg L-glutamate-5- O-phospho- aminotransferase: ammonium phosphate dehydratase acid activation leucyl/ BPET_RS17045 propanoate 2-amino-2-deoxy- to acetyl-CoA dihydroxy-acid pentose phosphate pathway propanoate [citrate lyase acyl- (R)-mevalonate dehydrogenase: alanine semialdehyde L-homoserine indole-3-glycerol phosphate BPET_RS14085 3-phosphoshikimate 1- FabZ: fabZ stearate phenylalanyl- D-gluconate citrate dehydratase: bifunctional phosphoserine 3-oxoacyl-ACP a long-chain (non-oxidative branch) I 3-hydroxyacyl-CoA a 5-methylaminomethyl- RNase III mRNA a 3-(acyloxy) 37 34 a [lipoyl-carrier hisD synthase TrpC: trpC tRNA--protein propionate-- carrier protein] acetate an N-terminal L- an L-arginyl- an L-arginyl- an (S)-2- a guanine a cytidine racemization type I glutamate- carboxyvinyltransferase: 3-(4-hydroxyphenyl) reductase dehydrogenase: propionate-- PTS mannose hydroxymethylglutaryl-CoA geranyl 2-thiouridine 34 isobutanoate pimeloyl-CoA acyl group of 3-hydroxybenzoate 6 roseoflavin DNA with lesion reduced riboflavin ilvD phosphatase/homoserine threonine a (2E)-oct- acyl-CoA fatty acid acetate- selenophosphate Arg a protein Arg processing halocarboxylate ala in tRNA protein]-N -[(R) ala phe acyl-CoA D-ribulose transferase: CoA ligase: CoA ligase: reductase, degradative: diphosphate glutamyl-[protein] [tRNA ] [tRNA ] in tRNA 2'-deoxyadenosine phosphotransferase -ammonia aroA pyruvate biosynthesis FabG: fabG 2-enoyl-[acp] BPET_RS15000 transporter in tRNA substrate bacterial toxin 3-hydroxybenzoate tRNA tRNA (cytidine(34) -dihydrolipoyl]- bifunctional excinuclease NADPH- (3S)-3-methyl-2- his L-glutamate-5- synthase: (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate synthetase: 5-phosphate a [protein] BPET_RS09045 citrate lyase -CoA 5-enolpyruvoyl- synthetase: an N-terminal BPET_RS04705 BPET_RS09045 subunit IIA: BPET_RS16955 6-monooxygenase: riboflavin kinase/ ABC subunit alanine oxopentanoate ThrH: thrH ala semialdehyde BPET_RS13905 ligase: glnA 3-oxoacyl-ACP enoyl-ACP BPET_RS00215 N-terminal L- subunit beta: ligase: acs (guanosine(37)-N1) -2'-O)- adenosine L-lysine dihydrolipoyl dependent alanine (S)-1-pyrroline- shikimate 3- BPET_RS00215 3-oxohexanoyl-CoA acyl-CoA BPET_RS14345 HAD family FAD synthetase: transaminase: L-glutamate biosynthesis III tyr reductase a long-chain arginyl-[protein] leucyl-L-arginine acyl-CoA BPET_RS11850 acetyl-CoA arginyltransferase: acetate--CoA 8-amino-7- acyloxyacyl BPET_RS02550 -methyltransferase methyltransferase: deaminase: dehydrogenase: UvrB: uvrB FMN branched-chain phosphoserine 5-carboxylate trifunctional tryptophan synthase: phosphate reductase stearoyl-CoA ribulose- ribose-5- synthetase: HMG-CoA tRNA 2- arginyltransferase: ribonuclease hydrolase: L-alanine racemase: thr aspartate/ fatty acyl-CoA synthetase: ligase: acs TrmD: trmD BPET_RS23805 BPET_RS14255 [+ 4 isozymes] reductase: alaC phosphatase SerB: serB FabG: fabG FabI: fabI BPET_RS00215 2-amino-2-deoxy-D- selenouridine(34) BPET_RS04700 oxononanoate hydrolase: 3-hydroxybenzoate an N 1 - a 2'-O- BPET_RS20185 lpdA amino acid biosynthesis III alr pyrroline-5- transcriptional trpB BPET_RS08840 gln chorismate phosphate 3- phosphate acetyl-CoA C- BPET_RS00215 BPET_RS04700 III: rnc BPET_RS08870 roseoflavin DNA without tyrosine/aromatic a citryl-holo 6-monooxygenase: 37 34 a [lipoyl-carrier ssuE pyruvate transaminase: 2-oxoglutarate synthase: a (3R)-3- [+ 5 isozymes] epimerase: isomerase leucyl/ acetyltransferase: gluconate 6-phosphate synthase synthase: bioF BPET_RS08850 methylguanine methylcytidine [+ 3 isozymes] D-ala carboxylate regulator/proline L-alanine hydroxymethylglutaryl-CoA [+ 2 isozymes] 6 5'-phosphate lesion glutamate synthase subunit ser ser aminotransferase: propanoyl-CoA [citrate lyase acyl- MnmH: mnmH an N-terminal BPET_RS07225 in tRNA in tRNA 2'-deoxyinosine protein]-N -[(R riboflavin BPET_RS04645 reductase: dehydrogenase/L- indole biosynthesis II glutamate aroC 3-(4- hydroxydecanoyl-[acp] rpe RpiA: rpiA phenylalanyl- BPET_RS11120 propanoyl-CoA lyase: BPET_RS14095 cys BPET_RS14085 an octanoyl-[acp] carrier protein] Arg isobutanoyl-CoA RNase III )-lipoyl]-L-lysine branched-chain alpha: BPET_RS00765 glutamate gamma- synthase tRNA--protein [+ 7 isozymes] a tRNA L-arginiyl-L- diphosphate an N-terminal (8S)-8-amino-7- a 3-hydroxyacyl gentisate IscS subfamily serine BPET_RS11740 hydroxyphenyl) 3-hydroxyacyl- 2-methylcitrate citryl-CoA lyase: [+ 3 isozymes] AMP a tRNA Arg an mRNA fragment processing a fatty acid NADP-specific glutamate chorismate D-xylulose D-ribose 5- transferase: 2-methylcitrate a 5-methylaminomethyl- (2E)-3,7- glutamyl-[protein] arginyl-[protein] a (2R)-2- coenzyme A group of amino acid hydroxymethyltransferase: semialdehyde tryptophan synthase: pyruvate subunit alpha: pyruvate ACP dehydratase a halide anion oxononanoate cysteine butanoyl-CoA synthase: prpC BPET_RS14585 34 product mRNA hydroxy fatty acid aminotransferase: dehydrogenase: gdhA dehydrogenase: alanine BPET_RS00765 fatty acid elongation -- saturated 5-phosphate phosphate BPET_RS04705 a [protein] synthase: prpC 2-selenouridine dimethylocta- bacterial toxin desulfurase: BPET_RS03070 pro trpB BPET_RS08840 FabZ: fabZ an N-terminal N-terminal L- KDGP [+ 3 isozymes] BPET_RS08740 glu putA transaminase: (2S,3S)-2- acetoacetate acetyl-CoA in tRNA 2,6-diene-1-thiol BPET_RS14065 L-lysyl-[protein] leucyl-L-lysine acyl-CoA (2S,3S)-2- gly alaC glu a (2E)-dec-2-enoyl-[acp] transketolase: tkt dehydrogenase: methylcitrate methylcitrate oxaloacetate ala an acetoacetyl-[acp] ile glu trp ala Fe/S-dependent 1 BPET_RS04300 bifunctional a peptidoglycan dimer with an N - an N-terminal sn-glycero-3-phospho- an sn-glycero-3- 2-hydroxy-4-oxobutane- β-D-fructofuranose 3-hydroxy-5- guanine 37 a uracil 1498 cis-3- a uridine 38- (3R)-3- bifunctional 2- an L-arginyl- 2-oxoglutarate ectoine acetyl-CoA an aliphatic nitrile enoyl-ACP D-sedoheptulose D-glyceraldehyde [+ 27 isozymes] 2-methylisocitrate 4-hydroxy-2- pentapeptide stems (meso- 2-oxoglutarate ethyladenine 3-sulfo-L- N-(arachidonoyl) phospho-N-(acyl) 1-phosphate Phe phenylcyclohexa- hydroxyoctadecanoyl- a protein methylcitrate [tRNA Arg ] 1,2,4-tricarboxylate methyl-benzoate in tRNA in 16S rRNA 40 in tRNA reductase 7-phosphate 3-phosphate dehydratase oxoglutarate ethanolamine 3-hydroxybenzoate 3,5-diene-1,2-diol CoA malonyl-CoA dehydratase/ acrylate degradation II diaminopimelate containing) in DNA alanyl-[protein] ethanolamine tRNA 16S rRNA cis-2,3- RluA family acetoacetyl- endopeptidase nitrile FabI: fabI crotonyl-CoA AcnD: acnD aldolase/2- 6-monooxygenase: (guanosine(37)-N1) (uracil(1498)-N(3))- pseudouridine synthase: La: lon hydratase: aconitate 4-carboxy-4-hydroxy- ectoine fructose- dihydrobiphenyl- CoA transaldolase: tal 2-methyl-trans dehydro-3-deoxy- DNA oxidative BPET_RS02550 -methyltransferase methyltransferase: synthase: BPET_RS16595 nthB nthA Nucleoside and Nucleotide Biosynthesis enoyl-CoA hydratase: pyruvate decarboxylation to acetyl CoA I coenzyme A acrylate 1,6-anhydro-N- arginyltransferase: glycerophosphodiester 2-oxoadipate hydroxylase: bisphosphate 2,3-diol reductase: endopeptidase a decanoyl-[acyl-carrier protein] NADPH repair (eukaryotes) -aconitate phosphogluconate demethylase glycerophosphodiester TrmD: trmD BPET_RS18410 BPET_RS08865 [+ 4 isozymes] a 3-oxoacyl-[acp] BPET_RS09215 acetylmuramyl-L- thpD 3-hydroxybenzoate an N 1 - an N 3 - dehydrogenase: phbB La: lon a primary hydratase: aldolase: a [pyruvate AlkB: alkB BPET_RS04700 phosphodiesterase: ugpQ phosphodiesterase: ugpQ aldolase/oxaloacetate aldolase class II: 3-oxoacyl- D-erythrose 2-methylaconitate alanine amidase 6-monooxygenase: 37 1498 [+ 2 isozymes] 3-oxooctadecanoyl- malonyl-CoA methylguanine methyluracil bphB 38- a peptide aliphatic amide superpathway of pyrimidine beta-ketoacyl- F6P BPET_RS22110 cis-2- BPET_RS04420 dehydrogenase decarboxylase: ligK BPET_RS18285 a pseudouridine superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) superpathway of guanosine 5-aminoimidazole ribonucleotide biosynthesis I ACP 4-phosphate NADPH cis-trans pyruvate propionate-- AmpD: ampD BPET_RS07225 Phe CoA superpathway of adenosine inosine-5'-phosphate biosynthesis I ACP synthase [+ 3 isozymes] methylaconitate 6 in tRNA in 16S rRNA biphenyl-2,3-diol ribonucleotides de novo biosynthesis E2 protein] N CoA ligase: an N-terminal L- 40 in tRNA nucleotides de novo biosynthesis II nucleotides de novo biosynthesis II II: fabF reductase isomerase pyruvate an N- 5-hydroxyectoine succinate 3-methylgentisate (S)-3- acetaldehyde an adenine in DNA succinate Arg anandamide sn-glycerol transketolase: tkt PrpF: prpF bifunctional D-glyceraldehyde -lipoyl-L-lysine BPET_RS09045 a tRNA arginiyl-3-sulfo- sn-glycerol 3-phosphate CTP PRPP FabG: fabG pyruvate dehydrogenase a peptidoglycan dimer with L-alanyl-γ-D-glutamyl- 3-phosphate acylethanolamine oxaloacetate pyruvate DHAP D-glyceraldehyde gln AIR hydroxybutanoyl-CoA aconitate 3-phosphate L-alanyl-[protein] hydrogencarbonate a 3-oxododecanoyl-[acp] 3-oxoacyl- cis-2- dihydrolipoyl (acetyl- pentapeptide stem (meso- meso-2,6-diaminopimeloyl- IMP IMP beta- D-glyceraldehyde 3-hydroxyacyl-CoA hydratase 2/2- asp ACP methylaconitate dehydrogenase: transferring), acryloyl-CoA diaminopimelate containing) D-alanyl-D-alanine 5-(carboxyamino) amidophosphoribosyltransferase: purF ketoacyl- 3-phosphate dehydrogenase: methylisocitrate 3-oxoacyl-ACP reductase (R)-NADPHX NAD(P)H-hydrate bifunctional lpdA homodimeric IMP imidazole ribonucleotide ACP BPET_RS17045 dehydratase: acnB glutamine- CDP reductase FabG: fabG epimerase: type: aceE synthase: BPET_RS18255 β aconitate [+ 3 isozymes] 1 N-acetyl-β-D-glucosamine- β a 5,6- α 34 hydrolyzing dehydrogenase: 5-phospho- - gly synthase 3-hydroxyacyl-CoA Fe/S-dependent an N - an N-terminal all-trans- an N-acetyl- - (R)-N-formyl-β- 3-hydroxy-4- -Kdo8N- an adenine adenylosuccinate FabG: fabG a (3R)-3- BPET_RS09765 glycolate and an L-arginyl- coenzyme A 20 D-glycerate an N-carbamoyl MeOH a protein with 2+ ribonucleotide- ribonucleotide- D-ribosylamine a 2,3,4-saturatedII: fabF hydratase 2/2- cob(II)inamide 2-oxoglutarate methyladenine 3-sulfino-L- decaprenyl 1,6-anhydro-N- VibB D-hexosaminide dihydrouracil (2->6)-lipid IV Fe carbamoyl- guaB N5-CAIR hydroxyacyl-[acyl- dehydrogenase: 2-methylisocitrate a [pyruvate a [pyruvate ATP Arg 4-hydroxybenzoate hydroxy-L-kynurenine methyl-benzoate A in tRNA synthase: 3-oxoacyl-ACP (S)-NADPHX methylisocitrate glyoxylate [tRNA ] β 3-deoxy-D-manno- D-amino acid a disulfide bond diphosphate diphosphate fatty acyl-[acp] dehydrogenase dehydrogenase in DNA alanyl-[protein] diphosphate acetyl- -D-muramate 3-hydroxybenzoate in tRNA phosphoglycerate catalase: tRNA bacterioferritin: phosphate BPET_RS10305 reductase 3-hydroxyacyl-carrier protein] BPET_RS15000 dehydratase degradation II 3-hydroxypropanoyl- tRNA N-carbamoyl- protein- reductase: reductase: phosphoribosylamine- dehydratase: acnB 6 6 6-monooxygenase: dehydrogenase: octulosonic BPET_RS20995 adenosine(34) synthase: XMP 5-(carboxyamino)imidazole AcnD: acnD E2 protein] N E2 protein] N -S- propanoyl-CoA beta-N- dihydrouridine(20/ D-amino-acid disulfide BPET_RS00430 FabG: fabG ACP NAD(P)H-hydrate glycolate dihydrolipoyllysine- CoA DNA oxidative holo-ACP BPET_RS02550 BPET_RS19640 acid kinase: carB carA BPET_RS02920 BPET_RS02920 UDP -glycine ligase: purD acetoacetyl-CoA Fe/S-dependent -dihydrolipoyl- acetyldihydrolipoyl- 4-hydroxybenzoate beta-N- acetylhexosaminidase: arylformamidase: hydrolase: catalase: deaminase reductase [+ 2 isozymes] formate ribonucleotide mutase: purE dehydratase dehydratase: (2R,3S)-2- cob(I)yrinic acid arginyltransferase: 20a) synthase BPET_RS09890 BPET_RS02925 BPET_RS02925 adenylo-succinate a (3R)-3- 2-methylisocitrate glycolate L-lysine residue L-lysine demethylase octaprenyltransferase: acetylhexosaminidase: synthase: nagZ kynB 3-hydroxybenzoate [+ 2 isozymes] BPET_RS01720 TadA: tadA glutamine- BPET_RS01800 a,c-diamide DusA: dusA 4-O-phospho- BPET_RS11790 a protein withDsbD: dsbD 3+ ribonucleotide- ribonucleotide- asp FabZ: fabZ acetyl-CoA C- methylisocitrate oxidase: acetyltransferase: AlkB: alkB BPET_RS04700 BPET_RS16520 a hypoxanthine Fe hydrolyzing GMP CAIR hydroxydodecanoyl-[acp] dehydratase ubiA nagZ 6-monooxygenase: 20 hydroxypyruvate α formaldehyde carbamoyl dCDP GAR adenosyltransferase: a uracil in tRNA -Kdo8N- a D-amino acid 34 in tRNAs reduced L- asp diphosphate diphosphate adenylosuccinate acyltransferase: AcnD: acnD glcF glcE aceF BPET_RS07225 phosphate ribonucleoside synthase: guaA 3-hydroxyacyl- NADPH BPET_RS24290 an N-acetyl-β- (2->6)-lipid IV cysteine residues lyase: purB BPET_RS17320 methylisocitrate glyoxylate β A triphosphate reductase: reductase: phosphoribosylglycinamide an N-terminal L- a holo-[VibB aryl- an alcohol (R)- -hydroxy- formate nucleoside- phosphoribosylaminoimidazolesuccinocarboxamide ACP dehydratase (2R,3S)-2- lyase: prpB an adenine in DNA formaldehyde succinate 3-decaprenyl-4- 1,6-anhydro-N- 3',5'-ADP D-hexosamine 4-methylgentisate BPET_RS02920 BPET_RS02920 formyltransferase: [+ 7 isozymes] a tRNA Arg arginiyl-3-sulfino- GlcNAc L-kynurenine reductase: diphosphate GMP FabZ: fabZ methylisocitrate malate adenosylcobinamide hydroxybenzoate acetyl-β-muramate carrier protein] aspartate BPET_RS02925 BPET_RS02925 synthase: BPET_RS18275 BPET_RS14250 acyl-CoA/acyl-ACP L-alanyl-[protein] UTP BPET_RS15635 AMP a trans-2- acetyl-CoA synthase G: triphosphate carbamoyltransferase: kinase: ndk a 2,3,4-saturated TCA cycle TCA cycle I (prokaryotic) pyruvate succinate a (2E)-dodec-2-enoyl-[acp] dehydrogenase: enoyl-[acyl- methylisocitrate BPET_RS24615 BPET_RS10410 dUDP guanylate FGAR fatty acyl-[acp] acetyl-CoA SAICAR BPET_RS06120 carrier protein] lyase: prpB ribonucleoside dCTP kinase: gmk enoyl-ACP [+ 5 isozymes] acetyl-CoA (S)-malate 3 adenylate kinase: adk an N - a 2,3,4-saturated 1518 UDP-N-acetyl- triphosphate nucleoside- adenylosuccinate phosphoribosylformylglycinamidine all-trans- adenine / an insertion sequence a negatively 1,6-anhydro-N- N-carbamoyl- reductase cob(II)alamin 2-oxoglutarate coenzyme A an apo [peptidyl- CO fumarate chitin α ethanol L-tartrate 3-cyanopyridine reductase: dCTP deaminase: diphosphate synthase: purL pyruvate succinate methylcytosine 4-hydroxybenzoate nonaprenyl 1,2-diacyl-sn- adenine 1519 in 16S rRNA asp element IS30 supercoiled DNA acetyl-β-muramate -D-muramate a protein L-aspartate lyase: purB FabI: fabI oxaloacetate ATP carrier protein] UDP-N- BPET_RS15635 BPET_RS20775 kinase: ndk GDP enoyl-ACP 2-methylcitrate in DNA diphosphate glycerol 3-phosphate CTP 16S rRNA transposase: DNA anhydro-N- catalase: L-tartrate nitrile ADP FGAM synthase: prpC (adenine(1518)-N(6)/ topoisomerase III: acetylmuramic acetylmuramate BPET_RS20995 dehydratase metalloprotease dihydroorotase: AICAR a dodecanoyl-[acp] reductase (2Fe-2S)- beta-N- BPET_RS05640 hydratase: dUTP DNA oxidative holo-ACP adenine(1519)-N(6))- L-aspartate BPET_RS07325 acid kinase: dehydrogenase: catalase: subunit B: TldD: tldD pyrC FabI: fabI citrate synthase: cob(I)yrinic acid 4-hydroxybenzoate phosphatidate binding protein: acetylhexosaminidase: [+ 8 isozymes] nthB nthA bifunctional phosphoribosylformylglycinamidine demethylase synthase: dimethyltransferase oxidase: an insertion [+ 5 isozymes] BPET_RS03050 murB BPET_RS01720 BPET_RS02015 [+ 2 isozymes] dUTPase: nucleoside- ribonucleotide- ribonucleotide- ribonucleotide- ribonucleotide- BPET_RS09280 Nucleoside and Nucleotide Degradation a,c-diamide octaprenyltransferase: cytidylyltransferase: BPET_RS12510 nagZ N-acetyl-D- UDP-N-acetyl-α- (S)-dihydroorotate superpathway of pyrimidine phosphoribosylaminoimidazolecarboxamide cyclo-ligase: BPET_RS04170 AlkB: alkB BPET_RS16520 RsmA: rsmA nadB sequence IS30 with nicotinamide diphosphate diphosphate diphosphate diphosphate diphosphate beta-ketoacyl- malate dehydrogenase: ubiA BPET_RS12785 N 6 -dimethyladenine 1518 a relaxed DNA muramate 6- D-glucosamine- acetaldehyde oxaloacetate a peptide nucleobases salvage BPET_RS14295 adenosyltransferase: kinase: ndk reductase: reductase: formyltransferase/IMP cyclohydrolase: purH 6 1519 integrated transposon nucleotide xanthine and reductase: reductase: AIR ACP synthase BPET_RS09245 BPET_RS24290 /N -dimethyladenine N-acetyl-D- phosphate enolpyruvate quinone- adenosine a reduced chitin uracil xanthosine salvage BPET_RS02920 BPET_RS02920 BPET_RS02920 BPET_RS02920 II: fabF inosine 5'- pyrimidine deoxyribonucleotides a holo [peptidyl- CO H + in 16S rRNA 2-iminosuccinate succinate glucosamine pyrophosphohydrolase: FAICAR (S)-malate citrate nucleotides a cytosine in DNA formaldehyde succinate 3',5'-ADP 3-nonaprenyl-4- a CDP-2,3,4-saturated- 2 ferredoxin [iron- dependent uracil BPET_RS02925 BPET_RS02925 BPET_RS02925 BPET_RS02925 laurate gondoate biosynthesis phosphate dephosphorylation carrier protein] BPET_RS22610 degradation II adenosylcobalamin hydroxybenzoate diacylglycerol sulfur] cluster dihydroorotate phosphoribosyltransferase: upp GTP ATP bifunctional (anaerobic) degradation nucleotide triphosphate xanthosine acyl-CoA dehydrogenase: UMP dUMP phosphoribosylaminoimidazolecarboxamide a 3-oxotetradecanoyl-[acp] bifunctional 2-methylcitrate Secondary Metabolite Degradation pyrophosphohydrolase: dADP synthetase: BPET_RS04695 an oleoyl-[acp] dehydratase/aconitate AMP UMP kinase: thymidylate dGDP formyltransferase/IMP cyclohydrolase: purH a malonyl-[acp] IMP BPET_RS22610 PRPP 3-oxoacyl-ACP BPET_RS00215 hydratase: BPET_RS09215 pyrimidine 5'- dCTP dCMP orotate BPET_RS12800 synthase: fumarate hydratase: D-galacturonate degradation I 2503 an apo-[LYS2 L- all-trans- 1402 an [amino-group carrier 34 (3R)-3- ribonucleoside ribonucleoside D-galactarate nucleotidase: IMP adenine a 2-deoxy-D- a nucleoside a cytidine an adenosine phosphoenol xanthine Tetrapyrrole Biosynthesis reductase lauroyl-CoA BPET_RS19350 [+ 2 isozymes] D-galactarate a nucleobase coenzyme A glycerophosphoserine 2-oxoglutarate γ a cytosine in DNA 3-oxopropanoate citrate BPET_RS20480 triphosphate nucleoside- triphosphate IMP BPET_RS02165 dehydrogenase: in 23S rRNA ribosyl-base 2-aminoadipyl- heptaprenyl thr protein]-C-terminal- - Ins(1)P his in [tRNA Arg2 ] hydroxypentanoyl- pyruvate UDP FabG: fabG beta-ketoacyl- aldehydo-D- degradation I degradation II 4-hydroxybenzoate triphosphate in 16S rRNA orotate reductase: nucleoside- diphosphate reductase: [+ 4 isozymes] guaB dUTPase: BPET_RS14295 carrier-protein] diphosphate 16S rRNA (L-ornithyl)-L-glutamate DNA cytosine malonic inositol aconitate tRNA CoA nucleoside- dTMP nicotinate 3-oxoacyl-ACP ACP synthase fumarate cis-aconitate galacturonate 5'/3'- nucleotide acetylornithine acetoacetyl- phosphoribosyltransferase: BPET_RS15635 kinase: ndk BPET_RS15635 superpathway of heme b XMP nucleotide (cytidine(1402)-2'-O) methyltransferase: semialdehyde L-histidine N(alpha) hydratase adenosine(34) pyruvate phosphoribosyltransferase: diphosphate superpathway of heme b siroheme biosynthesis superpathway of heme b biosynthesis from uroporphyrinogen-III II: fabF galactarate galactarate nucleotidase nucleoside pyrophosphohydrolase: monophosphatase: CoA pyrE diphosphate kinase: ndk dTMP kinase: biosynthesis from glutamate reductase pyrophosphohydrolase: 23S rRNA holo-ACP L-threonine 4- transaminase: BPET_RS25815 -methyltransferase: AcnA: acnA deaminase kinase: pyk BPET_RS10310 kinase: ndk galactarate 4-hydroxybenzoate glycerophosphodiester -methyltransferase: reductase: BPET_RS17275 reductase: BPET_RS12655 biosynthesis from glycine FabG: fabG succinate dehydrogenase/ bifunctional 2-methylcitrate galactarate SurE: surE (adenine(2503)-C(2) deoxyribosyltransferase: hydroxylase BPET_RS22610 BPET_RS00210 egtD UTP dehydratase: pyrimidine 5'- BPET_RS22610 synthase: octaprenyltransferase: phosphodiesterase: ugpQ rsmI [+ 2 isozymes] BPET_RS07690 [+ 2 isozymes] TadA: tadA fumarate reductase dehydratase: adenosine BPET_RS00115 a 2'-O- an [amino-group carrier [+ 2 isozymes] 34 phbB uroporphyrinogen-III uroporphyrinogen-III an (11Z)-3-oxo- dehydratase/aconitate nucleotidase: UTP and CTP dephosphorylation I dUTP dUMP )-methyltransferase BPET_RS16520 Tdo: tdo a nucleoside 5'- a 5-methylcytosine an inosine pyruvate orotidine 5'- dTDP dATP glu a (3R)-3- garD ubiA 1402 protein]-C-terminal-γ-(L- 3-hydroxypropanoate D-threo-isocitrate 3-oxopentanoyl- CTP synthase: XMP icos-11-enoyl-[acp] iron-sulfur subunit: hydratase: BPET_RS09215 D-tagaturonate garD 5-dehydro-4- RlmN: rlmN monophosphate methylcytidine in DNA myo-inositol hercynine in [tRNA Arg2 ] phosphate glutamate-- gly heme uroporphyrinogen hydroxytetradecanoyl-[acp] 5-dehydro-4- BPET_RS02165 CoA BPET_RS09150 nucleoside- BPET_RS01995 deoxy-D-glucarate adenosine UTP in 16S rRNA glutamate 5-semialdehyde- tRNA ligase: biosynthesis [+ 2 isozymes] tagaturonate deoxy-D-glucarate 5'/3'- a 2-deoxy-D- a holo-[LYS2 L- sn-glycerol 5-aminolevulinate decarboxylase: 3-hydroxyacyl- phosphatidylglycerol 3-oxoacyl-ACP deaminase: 5-hydroxy-CTP 5-hydroxy-CMP a nucleobase ser 4-hydroxy- succinate 2-yl)-L-glutamate orotidine-5'- CTP diphosphate [+ 2 isozymes] 5-dehydro-4- 2503 3',5'-ADP 2-aminoadipyl- 3-heptaprenyl-4- dGTP BPET_RS02950 synthase: hemA operon BPET_RS01725 biosynthesis II (non-plastidic) reductase reductase: 2-dehydro-3- nucleotidase a 2-methyladenine ribosyl-base 3-phosphate kinase: ndk an L-glutamyl- ACP dehydratase BPET_RS20185 CTP synthase: 5'-deoxyadenosine hydroxybenzoate L-threonine phosphate Glu BPET_RS19995 deoxyglucarate in 23S rRNA met carrier-protein] [tRNA ] 5-aminolevulinate protein HemX: FabZ: fabZ FabG: fabG succinate D-threo-isocitrate deoxyglucarate SurE: surE decarboxylase: coproporphyrinogen III dehydratase: BPET_RS09150 dTTP BPET_RS10500 DHAP 3-oxoacyl-ACP NADP-dependent isocitrate aldolase: garL inosine pyrF glutamyl-tRNA D-altronate kdgD UDP porphobilinogen [+ 3 isozymes] a (2E)-tetradec-2-enoyl-[acp] glycerol-3- reductase dehydrogenase: icd tartronate xanthosine reductase: ADP-forming succinate- CTP synthase: hemB precorrin-1 2,5- decaprenyl-diphospho-N- all-trans- 1402 a 2,3,4- UMP oxygen-dependent oxygen-independent phosphate FabG: fabG -CoA ligase: sucC sucD altronate semialdehyde adenosine UDP-N-acetyl- 5-amino-4- lysine within 3,4-dihydroxyphenylacetyl- a cytidine a [release factor]- 3-hydroxy-4- propane-1,2,3- BPET_RS23035 enoyl-ACP dehydrogenase: dioxopentanoate α acetylmuramoyl-pentapeptide PRPP an octanoyl-[acp] hexaprenyl glycerophosphoglycerol c-di-GMP oxaloacetate Ins(2)P wound RNA saturated (3R)-3- propionitrile UMP kinase: coproporphyrinogen coproporphyrinogen dehydratase: nucleotides -D-glucosamine imidazolecarboxyamide gcv protein H 4-hydroxybenzoate CoA in 16S rRNA L-glutamine methylbenzaldehyde Hyp tricarboxylate (S)-4-amino-5- porphobilinogen heme reductase a (3R,11Z)-3-hydroxy- diphosphate oxygen-sensing peptide chain ATP- hydroxyacyl-CoA BPET_RS12800 oxidase: hemF III oxidase: hemN BPET_RS23790 BPET_RS20005 degradation III 16S rRNA 2-methylcitrate aldehyde inositol FAD-dependent acetoacetyl- nitrile Metabolic Regulator Biosynthesis oxopentanoate biosynthesis sn-glycerol icos-11-enoyl-[acp] UMP 4-hydroxyproline FabI: fabI CDP undecaprenyldiphospho- cyclic-di-GMP (cytosine(1402)-N(4) release factor synthase: prpC dehydrogenase monophosphatase: tricarballylate dependent hydratase: CMP pyrimidine deoxyribonucleotide hydroxymethylbilane operon 3-phosphate 2-dehydro-3- L-idonate adenine hydroxyphenylacetyl- epimerase: CoA UDP glutamate-1- 3-hydroxyacyl- succinyl-CoA 2-oxoglutarate D-glycerate pyrimidine 5'- muramoylpentapeptide beta-N- lipoyl(octanoyl) 4-hydroxybenzoate glycerophosphodiester phosphodiesterase: )-methyltransferase N(5)-glutamine citrate synthase: (NADP(+)): dehydrogenase RNA helicase phosphorylation phosphorylation synthase: hemC deoxy-D-gluconate degradation hypoxanthine xanthine AMP phosphoribosyltransferase: CoA thioesterase BPET_RS17275 reductase: nthB nthA ppGpp metabolism semialdehyde protein HemX: protoporphyrinogen IX protoporphyrinogen IX a myristoyl-[acp] glycerol-3- ACP dehydratase 2-oxoglutarate nucleotidase: transferase phosphodiesterase: ugpQ dosP RsmH: rsmH methyltransferase: BPET_RS06355 BPET_RS06375 TcuA: tcuA HrpA: hrpA nucleoside- trehalose trehalose biosynthesis I acetylglucosaminyltransferase: octaprenyltransferase: an N 4 - BPET_RS09280 [+ 2 isozymes] phbB BPET_RS10500 2-dehydro-3- glycerate BPET_RS02165 AMP BPET_RS02305 LipB: lipB PaaI: paaI 5'-phosphoguanylyl(3'->5') 1,2-dihydroxypropane- 3-hydroxy-4- propionamide diphosphate CMP dTMP dCMP 2,1- preuroporphyrinogen phosphate 1-O- FabZ: fabZ murG ubiA 1402 prmC (4R)-4-hydroxy- cis-aconitate an unwound RNA a 2,3,4-saturated biosynthesis V beta-ketoacyl- deoxygluconokinase: L-idonate nucleosidase: methylcytidine 5 myo-inositol (d)CMP kinase: dTMP kinase: (d)CMP kinase: aminomutase: [+ 3 isozymes] acyltransferase 2-kinase: CMP 5'/3'- guanosine a [release factor]-N 1,2,3-tricarboxylate methyl-benzoate D-proline 3-oxoacyl-CoA kinase: ndk pppGpp D-glucopyranose a (2E,11Z)-icosa- Glycolysis BPET_RS04425 L-idonate 5- in 16S rRNA gln BPET_RS09600 α ACP synthase BPET_RS03860 BPET_RS11415 a [glycine-cleavage glycerol sn-glycerol (3,4- -methyl-L-glutamine BPET_RS12655 BPET_RS09600 a glycogen UDP- -D-glucose 6-phosphate hemL uroporphyrinogen- precorrin-2 PlsY: plsY dehydrogenase: pyrimidine 5'- nucleotidase decaprenyl-pyrophosphoryl- UTP CDP dTDP dCDP bifunctional (p)ppGpp II: fabF a 1-acyl-sn 2,11-dienoyl-[acp] alpha-ketoglutarate adenine UDP AICAR acyl-carrier protein complex H protein] 3-hexaprenyl-4- coenzyme A dihydroxyphenyl) glycogen III synthase: 2-phospho- urate nucleotidase: SurE: surE 3-phosphate synthetase/guanosine- 5-aminolevulinate -glycerol 3- enoyl-ACP dehydrogenase: mdeB glycolysis I (from glucose 6-phosphate) KDGP BPET_RS20035 xanthine (N-acetylglucosamine)-N- N 6 -octanoyl-L-lysine hydroxybenzoate acetate nucleoside- nucleoside- nucleoside- debranching BPET_RS10495 siroheme protoporphyrin IX D-glycerate 5-dehydro- BPET_RS02165 CTP synthase: 3',5'-bis(diphosphate) 3'- alpha,alpha- a 3-oxohexadecanoyl-[acp] phosphate reductase 2-oxoglutarate uridine acetylmuramyl-(pentapeptide) diphosphate diphosphate diphosphate protein synthase: D-glucopyranose D-gluconate BPET_RS09150 pyrophosphohydrolase: trehalose- porphobilinogen uroporphyrinogen-III 1-acyl-sn-glycerol- FabI: fabI dehydrogenase E1 5'/3'- kinase: ndk kinase: ndk kinase: ndk GlgX: glgX BPET_RS20540 ferrochelatase: 6-phosphate bifunctional BPET_RS08825 phosphate synthase: hemB 3-oxoacyl-ACP 3-phosphate component: BPET_RS09315 nucleotidase a [glycine-cleavage a protein RNase G guanosine 3'- a maltodextrin BPET_RS07870 4-hydroxy-2- an isoprenoid sn-glycero-3- a ribonucleoside 1-carboxyvinyl an [RNA]-3'- 3-hydroxy-5- (2R,3S)-3- CTP dTTP synthase uroporphyrinogen reductase SurE: surE D-glucopyranose maltopentaose coenzyme A an apo-[aryl- a single 2-chloroacetate N-ethylmaleimide acetaldehyde histidinol n-butyronitrile CTP dCTP bifunctional (p)ppGpp diphosphate 5'- glycine betaine sirohydrochlorin acyltransferase: a gondoyl-[acp] glucose-6- a sulfurated [sulfur carrier] SAM complex H protein] 4-hydroxybenzoate phosphoethanolamine carboxyphosphonate ribonucleoside- methylbenzaldehyde isopropylmalate with incorrect degradation (UDP- porphobilinogen decarboxylase: FabG: fabG oxoglutarate urate 6 carrier protein] diphosphate triphosphate stranded DNA synthetase/guanosine- triphosphate 3'- malto- biosynthesis I (Gram- protoheme BPET_RS22210 phosphate D-gluconate cytidine N -octanoyl-L-lysine carboxyvinyl- haloacid dehalogenase 2',3'- alkene reductase: aldehyde 3-isopropylmalate disulfide bonds aldehyde substrate mRNA histidinol nitrile forming): otsA BPET_RS01725 siroheme aldolase/2- protein disulfide- 3',5'-bis(diphosphate) 3'- diphosphatase: oligosyltrehalose negative bacteria) 3-oxoacyl-ACP [+ 2 isozymes] isomerase: 4-alpha- carboxyphosphonate type II: BPET_RS16410 cyclophosphate BPET_RS05970 dehydrogenase dehydratase: dehydrogenase ribonuclease dehydrogenase: hydratase: hydroxymethylbilane synthase: dehydro-3-deoxy- RNA 2',3'-cyclic isomerase: BPET_RS11380 synthase: treY reductase a 1,2-diacyl- biotin-carboxyl carrier NADH repair (eukaryotes) pgi holo-ACP 4-hydroxybenzoate glycerophosphodiester phosphorylmutase: haloacid dehalogenase alkene reductase: (NADP(+)): leuD leuC (NADP(+)): G: rng hisD nthB nthA pyrophosphohydrolase: α,α-trehalose choline synthase: hemC coproporphyrinogen III phosphogluconate lipoyl glucanotransferase: DNA primase: phosphodiesterase: BPET_RS20540 FabG: fabG sn-glycerol protein assembly synthase: octaprenyltransferase: phosphodiesterase: ugpQ BPET_RS08485 type II: BPET_RS24810 BPET_RS17395 BPET_RS06355 [+ 2 isozymes] BPET_RS22050 BPET_RS06355 BPET_RS11380 a maltooligosyl- choline aldolase: malQ BPET_RS10320 thpR a protein 6-phosphate oxygen-dependent 3-phosphate synthase: lipA BPET_RS16520 ubiA 3-(hydroxyphosphinoyl) an [RNA]-3'- 3-hydroxy-5- (2S)-2- an mRNA fragment his butyramide trehalose dehydrogenase: preuroporphyrinogen siroheme a (3R)-3- a [biotin carboxyl- NADH F6P BPET_RS04420 D-gluconate glycolate N-ethylsuccinimide with correct acetate trehalose- coproporphyrinogen phosphatidate pyruvate ribunucleoside- methyl-benzoate isopropylmalate malto- BPET_RS14735 hydroxyhexadecanoyl-[acp] carrier protein]-L-lysine 6-phosphate disulfide bonds phosphatase: uroporphyrinogen- oxidase: hemF cytidylyltransferase: a [glycine-cleavage maltose maltotetraose sn-glycerol ssDNA/pppN(pN) 2'-phosphate oligosyltrehalose class 1 fructose- D-glyceraldehyde a holo-[aryl- a 4-hydroxy-3- ethanolamine choline 3-hydroxyacyl- BPET_RS12785 biotin--[acetyl- 6 an unsulfurated 3',5'-ADP otsB III synthase: pyruvate 5'-deoxyadenosine met complex H protein] N 3-phosphate hybrid trehalohydrolase: dehydrogenase: protoporphyrinogen IX ACP dehydratase CoA-carboxylase] bisphosphatase: 3-phosphate carrier protein] polyprenylbenzoate n -1 Storage Compound Biosynthesis GTP ppGpp BPET_RS10495 a CDP- Chlorinated Compound Degradation -[(R)-lipoyl]-L-lysine [sulfur carrier] treZ α,α-trehalose BPET_RS13895 BPET_RS24540 FabZ: fabZ diacylglycerol ligase: betaine aldehyde heme a biosynthesis α,α-trehalose uroporphyrinogen-III BPET_RS24340 (R)-NADHX cyanophycin metabolism a (2E)-hexadec-2-enoyl-[acp] CDP-diacylglycerol-- β-D-fructose 1,6- 3,4,6-trichlorocatechol degradation polyhydroxybutanoate biosynthesis a [biotin carboxyl- a [pyruvate dehydrogenase E2 a single- RNase R degradation an (R)-2- a 3,5,7,9,11,13,15- 8-phenyloctanoyl- L-malic a [protein]- betaine aldehyde glycerol-3-phosphate 3- NAD(P)H-hydrate bisphosphate 3,5-dichlorocatechol degradation 4,5-dichlorocatechol degradation chlorosalicylate degradation D-glucopyranose maltohexaose coenzyme A AsbD acyl- dihydrolipoamide uroporphyrinogen-III gentisate (E)-caffeoyl-CoA methylglyoxal uroporphyrinogen carrier protein]-N a sulfurated [sulfur carrier] SAM 6 hepta-oxo- thr nucleoside- protoheme epimerase: DHAP protein] N -octanoyl-L-lysine carrier protein stranded RNA substrate RNA halocarboxylate CoA semialdehyde L-tyrosine dehydrogenase: decarboxylase: protoporphyrin IX enoyl-ACP phosphatidyltransferase: 6 -biotinyl-L-lysine uroporphyrinogen-III hexadecanoyl-[PKS-acp] gentisate 1,2- electron transfer acyl-CoA aldehyde asp bifunctional (p)ppGpp protoheme IX (S)-NADHX fructose- 3,4,6-trichlorocatechol 4,5-dichlorobenzene- dihydrolipoyllysine- aldo/keto glyoxalase: hypothetical acetyl-CoA diphosphate BPET_RS24540 reductase pgsA BPET_RS09765 4-chlorosalicylate 5-chlorosalicylate threonine/serine synthetase/guanosine- BPET_RS01725 farnesyltransferase: bisphosphate chlorocatechol 3,5-dichlorocatechol 4-alpha- residue C-methyltransferase: reductase: dioxygenase: gtdA flavoprotein dehydrogenase: dehydrogenase BPET_RS06000 protein: kinase: ndk GDP ferrochelatase: 1-(3-sn- 1,2-diol HAD family dehydratase: FabI: fabI NAD(P)H-hydrate triose-phosphate 1,2-dioxygenase: chlorocatechol chlorocatechol holo-ACP polyribonucleotide ribonuclease acetyltransferase: cobA gentisate 1,2- subunit alpha: BPET_RS00225 (NADP(+)): cyanophycin acetyl-CoA C- 3',5'-bis(diphosphate) 3'- glycine betaine coproporphyrinogen III BPET_RS00885 phosphatidyl) aldolase class II: glucanotransferase: hydrolase: BPET_RS11110 BPET_RS24720 [+ 3 isozymes] BPET_RS05225 pyrophosphokinase: BPET_RS07870 1,2-dioxygenase: 1,2-dioxygenase: synthase: nucleotidyltransferase: pnp R: rnr dioxygenase: gtdA BPET_RS19245 [+ 8 isozymes] BPET_RS06355 synthetase: cphA acyltransferase: pyrophosphohydrolase: trehalose ferroheme o a [biotin carboxyl- dehydratase: isomerase: BPET_RS18285 BPET_RS07770 6-hydroxynicotinate 6-hydroxynicotinate lipoyl synthase: lipA malQ aceF [+ 3 isozymes] [+ 5 isozymes] a [protein]- BPET_RS11380 a palmitoyl-[acp] -sn-glycerol BPET_RS07770 BPET_RS08870 9-hydroxy-3,5,7,11,13,15- (2E)-phenyloct- [+ 2 isozymes] (R)-lactate BPET_RS08825 biosynthesis IV oxygen-dependent carrier-protein dimer]- BPET_RS01800 BPET_RS08255 chlorocatechol BPET_RS07770 BPET_RS16520 S-acetyldihydrolipoamide precorrin-2 3-maleylpyruvate hydrocaffeoyl-CoA (S)-malate L-tyrosine cyanophycin BPET_RS17320 protoheme 3-phosphate 3-monooxygenase: 3-monooxygenase: hexaoxohexadecanoyl- 2-enoyl-CoA 2-oxobutanoate coproporphyrinogen heme A synthase: N 6 -biotinyl-L-lysine 1,2-dioxygenase: chlorocatechol chlorocatechol phosphate synthetase: cphA [+ 7 isozymes] bifunctional (p)ppGpp α NADH BPET_RS06730 BPET_RS06730 a single- [PKS-acp] -maltose oxidase: hemF BPET_RS00880 phosphatidylglycerophosphatase BPET_RS19020 1,2-dioxygenase: 1,2-dioxygenase: maltopentaose maltose a nucleoside a diribonucleotide a nucleoside 5'- a (2R)-2- cyanophycin synthetase/guanosine- acetyl-CoA acetyl-CoA D-glyceraldehyde a [pyruvate dehydrogenase 3',5'-ADP a holo-[AsbD acyl- a halide anion arg maltose alpha-D- A: BPET_RS20065 BPET_RS19020 BPET_RS19020 5'-deoxyadenosine diphosphate stranded RNA monophosphate hydroxy fatty acid acetoacetyl-CoA 3',5'-bis(diphosphate) 3'- carboxylase carboxylase 3-phosphate 2,3,5-trichloro-cis,cis-muconate met E2 protein] N 6 -lipoyl-L-lysine an unsulfurated [sulfur carrier] carrier protein] primer-L-aspartate glucosyltransferase: protoporphyrinogen IX ferroheme i an L-1- 2,4-dichloro- 2,3-dichloro- pyrophosphohydrolase: carboxyltransferase biotin cis,cis-muconate cis,cis-muconate acetoacetyl- treS palmitate phosphatidyl- type I 2,3,5-trichloro-cis,cis- BPET_RS11380 α α subunit beta: carboxylase 4-chlorocatechol degradation cyanophycin CoA , -trehalose heme A synthase: sn-glycerol glyceraldehyde- muconate cycloisomerase: 2,4-dichloro- 2,3-dichloro- GDP acyl-CoA BPET_RS08845 subunit: accC 967 1939 synthetase: cphA reductase: BPET_RS00880 BPET_RS19025 cis,cis-muconate cis,cis-muconate 4-chlorocatechol a maltodextrin an (R)-2- S-(2-hydroxyacyl) UDP-4-amino-D-fucose a cytosine a uracil a [protein]- synthetase: a [carboxyl-carrier 3-phosphate a ferrocytochrome palmitoyl-CoA D-glucopyranose hydrogen selenide 2-oxoglutarate phytanoyl-CoA a holo [PedD acyl- an acyl phosphate chloroacetaldehyde benzaldehyde pyrazinamide cyanophycin phbB dehalogenase: cycloisomerase: O-acetyl-L-serine halocarboxylate glutathione in 16S rRNA in 23S rRNA asp L-glutamine 6 dehydrogenase: 2-chloro-2-(2,4-dichloro- 4-chlorocatechol b UDP-4-amino-4, 6- carrier protein] protoporphyrin IX hydroxyferroheme i BPET_RS00215 protein dimer]-N - chlorocatechol 5 16S rRNA 23S rRNA aldehyde aldehyde chemoreceptor synthetase: cphA (3R)-3- Respiration gap 5-oxofuran-2-yl)acetate BPET_RS07775 BPET_RS07775 chlorocatechol dideoxy-N-acetyl- aspartate/ amidase: carboxybiotinyl-L-lysine 1,2-dioxygenase: (cytosine(967)-C(5) ACP S- (uracil(1939)-C(5)) acylphosphatase: dehydrogenase dehydrogenase glutamine hydroxybutanoyl- poly-[(R)-3- palmitoyl-CoA 2,4-dichloro- 2-chloro-2-(2-chloro- 1,2-dioxygenase: 4-alpha- phytanoyl-CoA HAD family beta-L-altrosamine tyrosine/aromatic BPET_RS11310 ferrochelatase: BPET_RS07770 cysteine malonyltransferase: asp CoA hydroxybutanoate] 2,5-dihydro-5- glucanotransferase: hydroxyacylglutathione )-methyltransferase -methyltransferase BPET_RS00065 (NADP(+)): (NADP(+)): [+ 6 isozymes] deamidase cyanophycin 2-oxoglutarate decarboxylation to succinyl-CoA 13-DPG 5-oxofuran-2-yl)acetate BPET_RS07770 aminotransferase: dioxygenase: hydrolase: transaminase: pseC fabD aminotransferase: BPET_RS07870 oxofuran-2-acetate chlorocatechol malQ synthase hydrolase: gloB RsmB: rsmB RlmD: rlmD BPET_RS06355 BPET_RS06355 pyrazine-2- CheD: cheD chlorocatechol BPET_RS14235 BPET_RS22845 BPET_RS08870 UDP-4-dehydro-6- a 5-methylcytosine 967 a malonyl- a 5-methyluracil 1939 BPET_RS14085 a [protein]-α- class I poly(R)- a [2-oxoglutarate 1,2-dioxygenase: CysM: cysM a carboxylate 2-chloroacetate benzoate carboxylate Carbohydrate Biosynthesis protoheme ferroheme a 2,5-dichloro-trans-dienelactone 1,2-dioxygenase: deoxy-α-D-glucose in 16S rRNA [PedD acyl- in 23S rRNA oxaloacetate L-glutamate cyanophycin hydroxyalkanoic dehydrogenase E2 BPET_RS19020 alpha- phosphoglycerate BPET_RS19020 a 2-hydroxy carrier protein] synthetase: cphA acid synthase: protein] N 6 -lipoyl-L-lysine kinase: 5-chloro-trans 3-chloro-cis a maltodextrin maltose 2-hydroxyphytanoyl- an (S)-2- glutathione gluconeogenesis I ketoglutarate carboxymethylenebutenolidase: 2-chloro-trans 3-chloro-cis,cis-muconate palmitoleoyl-CoA a ferricytochrome acetate L-selenocysteine succinate a halide anion carboxylate phaC PRPP biosynthesis CMP-pseudaminate biosynthesis glycogen biosynthesis I (from ADP-D-Glucose) BPET_RS18395 -dienelactone ,cis-muconate CoA hydroxycarboxylate cyanophycin ADP-L-glycero-β- dehydrogenase: BPET_RS01550 -dienelactone b 5 synthetase: cphA D-manno-heptose mdeB carboxymethylenebutenolidase: chloromuconate chloromuconate poly-[(R)-3- (S)-malate D-ribose 5- UDP-N-acetyl-α-D-glucosamine 3-phospho- cycloisomerase: biosynthesis D-glucopyranose 6-phosphate 2-oxoglutarate 2,5-dichloromaleylacetate BPET_RS01550 cycloisomerase: hydroxybutanoate] phosphate UDP-N-acetylglucosamine lipid IV biosynthesis (P. putida) Cell Structure Biosynthesis alpha- D-glycerate BPET_RS07775 arg ribose-phosphate D-sedoheptulose A BPET_RS07775 undecaprenyl-diphospho-N a plant soluble [cyanophycin]-L-aspartate lipid IV biosynthesis (E. coli) dehydrogenase UDP-N-acetyl-α-D-glucosamine 7,8-dihydrofolate + an (S)-2- (9Z,12Z,15Z,18Z,21Z)-3- 3-heptaprenyl-4- 4,6-dehydratase A peptidoglycan maturation (meso-diaminopimelate containing) maleylacetate reductase: (2R)-2-chloro- D-glucopyranose coenzyme A [EntB aryl- NADPH H a [protein] (L-serine/L- a holo [PedN acyl- 3-hydroxybenzaldehyde L-cysteate (3S)-3-hydroxy- an aldehyde DHAP CAIR pyrophosphokinase: 7-phosphate phosphomannomutase/ ketoglutarate 2-chloro-cis- 5-chloromaleylacetate -acetylmuramoyl-L-alanyl-γ- heteroglycan monoglutamate halocarboxylate cerotoyl-CoA phosphoheptose (inverting): pseB a (3R)-3- E1 component: 2,3- (2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate 2,5-dihydro-5- carrier protein] threonine) phosphate oxotetracosapentaenoyl-CoA hydroxybenzoate carrier protein] L-aspartate BPET_RS20315 phosphoglucomutase: a (3R)-3- dehydrogenase: BPET_RS07790 dienelactone D-glutamyl-L-lysyl- D-alanine aldehyde aspartate/ aldehyde 5-(carboxyamino) isomerase: UDP-2-acetamido-2,6-dideoxy- hydroxydecanoyl- lipid II (meso BPET_RS09315 diphosphoglycerate- maleylacetate oxofuran-2-acetate protein phosphatase 4-hydroxy-3- methylcrotonoyl- threo-3-hydroxy- methylglyoxal cyanophycin malate PRPP BPET_RS20415 UDP-N-acetyl- hydroxytetradecanoyl- mdeB [+ 2 isozymes] acetoacetyl-CoA ACP S- dehydrogenase tyrosine/aromatic dehydrogenase imidazole BPET_RS02190 β-L-arabino-hex-4-ulose UDP-N-acetyl- diaminopimelate containing) a [2-oxoglutarate dependent carboxymethylenebutenolidase: undecaprenyldiphospho- 4-alpha- CheZ: cheZ polyprenylbenzoate CoA carboxylase: L-aspartate synthase: synthetase: cphA dehydrogenase: D-glycero-D- α [acp] α-D-glucosamine a [2-oxoglutarate reductase: dihydrofolate HAD family reductase: phbB malonyltransferase: malate -D-glucopyranose [acp] α-D-glucosamine [+ 5 isozymes] dehydrogenase BPET_RS01550 muramoylpentapeptide beta-N- glucanotransferase: holo-ACP decarboxylase: ubiD (NADP(+)): BPET_RS05850 aminotransferase: (NADP(+)): BPET_RS14030 ribonucleotide BPET_RS09245 manno-heptose UDP-4-amino-4, 6-dideoxy- monofunctional dehydrogenase E2 protein] phosphoglycerate 2,5-dichloro-3-oxoadipate BPET_RS07790 reductase: hydrolase: protein phosphatase ammonia-lyase: cyanophycin dehydrogenase: 1-phosphate 6 synthase: fabD BPET_RS06355 BPET_RS14085 BPET_RS06355 mutase: purE N-acetyl-beta-L-altrosamine acyl-ACP--UDP-N- 6 E2 protein] N -S- mutase: gpmA acetylglucosaminyltransferase: malQ BPET_RS20485 BPET_RS08870 2C domain-containing (3R,9Z,12Z,15Z,18Z,21Z)-3- a malonyl[PedN 2-carboxycerotoyl- BPET_RS04555 synthetase: cphA BPET_RS09295 7-phosphate acyl-ACP--UDP-N- biosynthetic N -dihydrolipoyl-L-lysine [+ 2 isozymes] BPET_RS16520 2-heptaprenylphenol methylglyoxal transaminase: pseC acetylglucosamine O- succinyldihydrolipoyl-L-lysine 2-chloromaleylacetate murG protein: BPET_RS21565 hydroxytetracosapentaenoyl-CoA acyl-carrier 3-hydroxybenzoate CoA 3-sulfopyruvate oxaloacetate a carboxylate AIR D-glycero- acetylglucosamine O- peptidoglycan 2-maleylacetate protoanemonin cis-dienelactone UDP-4-amino-4,6-dideoxy- acyltransferase: lpxA 2-phospho- 5-chloro-3-oxoadipate a plant soluble a [protein] Ser/Thr protein] pyruvate beta-D- acyltransferase: lpxA transglycosylase: maleylacetate maltose 5,6,7,8- an (S)-2- N-acetyl-β-L-altrosamine ditrans,octacis-undecaprenyldiphospho- UDP a holo-[EntB aryl- + cyanophycin oxaloacetate manno- mtgA D-glycerate reductase: maleylacetate reductase: carboxymethylenebutenolidase: heteroglycan 3',5'-ADP NADP a halide anion a (1->4)-α-D-glucan ADP-α-D-glucose UDP-3-O-[(3R)-3- 5-chloromaleylacetate N-acetyl-(N-acetylglucosaminyl)muramoyl- tetrahydrofolate hydroxycarboxylate heptose-7- UDP-4-amino-4, 6-dideoxy- UDP-3-O-[(3R)-3- a nascent peptidoglycan BPET_RS07790 BPET_RS01550 carrier protein] BPET_RS07790 L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine phosphoenolpyruvate phosphate N-acetyl-beta-L-altrosamine glycogen hydroxydecanoyl]- γ phosphopyruvate [+ 2 isozymes] α hydroxymyristoyl]-N- with (L-alanyl- -D-glutamyl- alpha- maleylacetate reductase: [+ 2 isozymes] synthase: ppsA N-acetyltransferase: pseH N-acetyl- -D- α hydratase: eno 2-maleylacetate kinase: rfaE1 synthase acetyl- -D-glucosamine meso-2,6-diaminopimeloyl-D- ketoglutarate BPET_RS07790 2-maleylacetate D-glycero-β-D- UDP-2,4-diacetamido-2,4,6- glucosamine 3-oxoadipate UDP-N-acetyl-α-D-glucosamine undecaprenyl-diphospho-N-acetylmuramoyl-L- 6-O-cis-keto- 6-O-α-mycolyl- GlgA: glgA UDP-3-O-acyl-N- alanyl-D-alanine) pentapeptide dehydrogenase: [+ 2 isozymes] 5-chloro-3-oxoadipate D-glucopyranose [EntF L-seryl- poly-3- D-threo-7,8- 1-carboxyvinyl (9Z,12Z,15Z,18Z)-3- a 4-hydroxy-3- a double-stranded (2R,3S)-3- N-β-aspartyl-L-arginine β UDP-3-O-acyl-N- maleylacetate alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine maltotetraose coenzyme A a holo [BryP acyl- propanoyl-CoA an aromatic mycolyl-trehalose malonyl-CoA trehalose 6- phosphoenolpyruvate manno-heptose trideoxy- -L-altropyranose acetylglucosamine mdeB maleylacetate hydroxyoctanoate dihydroneopterin carboxyphosphonate oxotetracosatetraenoyl-CoA polyprenylbenzoate oligonucleotide isopropylmalate a (1->4)-α-D-glucan acetylglucosamine phosphoenol reductase: carrier protein] carrier protein] amino acid 1,7-bisphosphate UDP-2,4-diacetamido- deacetylase: penicillin-binding 5-chloro-3-oxoadipate carboxyvinyl- methylcrotonoyl- 3-isopropylmalate 6-phosphate malonyl-CoA phosphate D-alanyl-D-alanine- [+ 2 isozymes] pyruvate reductase: undecaprenyldiphospho- 4-hydroxy-3- aspartate/ trehalose- trehalose- D-glycero- 2,4, 6-trideoxy-beta- deacetylase: BPET_RS07790 carboxyphosphonate acetoacetyl-CoA ACP S- oligoribonuclease: isoaspartyl phosphopyruvate 1,4-alpha-glucan BPET_RS03545 carboxypeptidase/ protein 2: BPET_RS07790 muramoylpentapeptide beta-N- 4-alpha- polyhydroxyalkanoate polyprenylbenzoate CoA carboxylase: dehydrogenase: tyrosine/aromatic decarboxylase: beta-D-manno- BPET_RS03545 UDP-3-O-(3- [+ 2 isozymes] holo-ACP dihydroneopterin phosphorylmutase: reductase: phbB malonyltransferase: orn phosphatase: phosphatase: peptidase/L- hydratase: eno L-altropyranose branching endopeptidase BPET_RS03490 a mature peptidoglycan with [+ 2 isozymes] acetylglucosaminyltransferase: glucanotransferase: decarboxylase: ubiD BPET_RS05850 leuB aminotransferase: BPET_RS16605 UDP-3-O-(3- phosphoenolpyruvate pyruvate 2-maleylacetate 3-chlorocatechol degradation I (ortho) synthase: depolymerase: aldolase: folB BPET_RS08485 fabD otsB otsB heptose 1,7- hydrolase: pseG protein GlgB: glgB hydroxymyristoyl) AmpH: ampH [+ 2 isozymes] (L-alanyl-γ-D-glutamyl-meso- malQ a 2-(all-trans- a malonyl- a nucleoside 5'- 4-methyl-2- asparaginase: hydroxydecanoyl) synthase: ppsA kinase: pyk 3-oxoadipate murG BPET_RS08785 (3R,9Z,12Z,15Z,18Z)-3- (S)-methylmalonyl- BPET_RS14085 trehalose-cis-keto- acetyl-CoA α, α'-trehalose 2-phospho-D-glycerate bisphosphate 7- 2,4-diacetamido-2,4,6- UDP-α-D-glucose -α-D-glucosamine 2-oxoisovalerate decarboxylation to isobutanoyl-CoA 3-oxoadipate BPET_RS16520 carboxyphosphinopyruvate an aromatic BPET_RS09110 UDP-N-acetyl-D- -α-D-glucosamine [+ 2 isozymes] 2,6-diaminopimeloyl-D-alanyl- maleylacetate hydroxytetracosatetraenoyl-CoA polyprenyl)phenol [BryP acyl- monophosphate CoA oxopentanoate mono-mycolate 6-α-mycolate phosphatase: trideoxy-β-L-altropyranose a glycogen biosynthesis UDP-3-O-(3- a nascent peptidoglycan 2-maleylacetate 3-chlorocatechol 2-oxo-acid glucosamine biosynthesis I UDP-3-O-(3- D-alanine) pentapeptide reductase: carrier protein] an [apo BCAA chlorocatechol ditrans,octacis-undecaprenyldiphospho-N- maltose maltotriose a holo-[EntF poly-3- poly-3- 6-(hydroxymethyl) glycolaldehyde gmhB pseudaminic acid D-glucopyranose hydroxymyristoyl) a nascent peptidoglycan with D,D cross-links (meso- UDP D-glucopyranose D-glycero-β-D- hydroxymyristoyl) dehydrogenase pyruvate maleylacetate reductase: BPET_RS07790 acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L- 3',5'-ADP L-seryl-carrier -7,8-dihydropterin arg asp synthase: pseI glucosamine N- with (L-alanyl-γ-D-glutamyl- diaminopimelate containing) 1,2-dioxygenase: hydroxyoctanoate hydroxyoctanoate 6-phosphate glucosamine N- 6 3-methyl-2- BPET_RS07790 6-phosphateglucose-6- manno-heptose phosphomannomutase/ acyltransferase: E2 protein] N [+ 2 isozymes] BPET_RS07770 alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine protein] pseudaminate acyltransferase: meso-2,6-diaminopimeloyl- oxobutanoate [+ 2 isozymes] 3-phospho-D-glycerate phosphate 1-phosphate phosphoglucomutase: lpxD -lipoyl-L-lysine 5-chloro-3-methyl- chlorocatechol lpxD D-alanine) tetrapeptide Kdo transfer to lipid dehydrogenase (2- 3-oxoadipate isomerase: pgi pseudaminic acid dTDP-β-L-rhamnose α BPET_RS20415 UDP-2-N,3-O-bis[(3R)- IV II (Haemophilus) 3-oxoadipate catechol degradation 1,2-dioxygenase: a methylated N,N',N''- phosphoglycerate -D-glucopyranose UDP-2-N-[(3R)-3- a mature peptidoglycan A dihydrolipoyl methylpropanoyl- phosphoenol a 5' triphospho- 3-nonaprenyl-4- (S)-3- a [protein]-L- 2-hydroxy-2- F6P cytidylyltransferase: pseF biosynthesis 3-hydroxytetradecanoyl]- peptidase S66: dethiobiotin a sulfurated seleno-L- 2-oxoglutarate hydrogencarbonate carboxyphosphinopyruvate a holo [BryU acyl- 2-phosphoglycolate a thiopurine nitric oxide (R)-lactate kinase: 1-phosphate hydroxydodecanoyl]- with D,D cross-links (meso- dehydrogenase: transferring): 5-chloro-3- BPET_RS19020 SAM nucleobase pyruvate triacetylchitotriose [mRNA] hydroxybenzoate hydroxybutanoyl-CoA proline (ω = 180) methylpropanenitrile β α-D-glucosamine BPET_RS12960 CMP-Kdo lipid IV (E. coli) [sulfur carrier] homocysteine carrier protein] BPET_RS18395 ADP-D-glycero- - CMP-pseudaminate α-D-glucopyranose 3-O-[(3R)-3- diaminopimelate containing) A lpdA BPET_RS17820 methylcatechol 2-chloro-cis,cis-muconate within DNA carboxyvinyl- RNA 4-hydroxy-3- phosphoglycolate enoyl-CoA thiopurine S- peptidylprolyl NO-inducible nitrile D-2-hydroxyacid glutamine-- UTP--glucose- UDP-2,3- 5-methyltetrahydropteroyltriglutamate- ACP S- D-manno-heptose 1-phosphate a nascent peptidoglycan a nascent peptidoglycan a mature peptidoglycan BPET_RS17825 carboxyphosphonate isomerase: fructose-6- 1-phosphate hydroxydecanoyl]- a nascent peptidoglycan with [+ 3 isozymes] chlorocatechol 2-chloromuconate Alcohol Degradation beta-N- pyrophosphohydrolase: polyprenylbenzoate phosphatase: hydratase: methyltransferase: flavohemoprotein: hydratase: dehydrogenase: ADP- α diacylglucosamine with L,D cross links (meso- with (L-alanyl-γ-D-glutamyl- with (L-alanyl-γ-D-glutamyl- biotin - homocysteine S- DNA oxidative phosphoenolpyruvate phosphorylmutase: malonyltransferase: BPET_RS25270 13-DPG phosphate uridylyltransferase -D-glucosamine (L-alanyl-γ-D-glutamyl-meso- 3-deoxy-D-manno- Detoxification 1,2-dioxygenase: cycloisomerase: acetylhexosaminidase: BPET_RS03330 decarboxylase: ubiD BPET_RS01600 BPET_RS17305 BPET_RS19495 hmpA nthB nthA BPET_RS19575 glyceromanno- diphosphatase: diaminopimelate containing) meso-2,6-diaminopimeloyl- meso-2,6-diaminopimeloyl- an [apo BCAA an [apo BCAA dehydrogenase synthase methyltransferase: metE demethylase carboxylase: ppc BPET_RS08485 fabD [+ 8 isozymes] transaminase CMP-3-deoxy-D- dTDP-α-D-glucose GalU: galU UDP-2,3- 2,6-diaminopimelate) tripeptide octulosonic acid BPET_RS07770 BPET_RS07775 glycerol and glycerophosphodiester degradation nagZ a 5'-phospho- a malonyl- (3R)-3- a thiopurine BPET_RS09190 glycine) tetrapeptide D-alanine) tetrapeptide E2 protein] N 6 -S-[2- BioB: bioB AlkB: alkB 3-(hydroxyphosphinoyl) 2-nonaprenylphenol glycolate a [protein]-L- nitrate 2-hydroxyisobutyramide pyruvate type I heptose 6- manno-octulosonate diacylglucosamine transferase: dehydrogenase SeMet [mRNA] [BryU acyl- hydroxybutanoyl-CoA S-methylether (isomerizing) 6 reactive oxygen species degradation chlorocatechol ω epimerase: rfaD dTDP-glucose 4,6- UTP--glucose- UDP-2,3- E2 protein] N - methylpropanoyl]dihydrolipoyl- pyruvate proline ( = 0) glyceraldehyde- : glmS biosynthesis diphosphatase: Kdo transfer to BPET_RS24350 arsenate arsenate 1,2-dioxygenase: (+)-5-chloromuconolactone N,N'- N-acetyl-D- carrier protein] β D-ribulose dehydratase: rfbB 1-phosphate diacylglucosamine dihydrolipoyl-L-lysine L-lysine glycerol 3-phosphate ADP-L-glycero- - BPET_RS09190 a mature peptidoglycan lipid IV I (E. coli) detoxification detoxification BPET_RS19020 biotin 5'-deoxyadenosine an unsulfurated formaldehyde a nucleobase succinate oxaloacetate diacetylchitobiose glucosamine D-glucosamine uridylyltransferase a mature peptidoglycan with A α superoxide (+)-5-chloromuconolactone met triose-phosphate dehydrogenase: D-manno-heptose 5-phosphate dTDP-4-dehydro-6- diphosphatase: with L,D cross-links (meso- a mature peptidoglycan -Kdo-(2->6)- III (thioredoxin) II (glutaredoxin) [sulfur carrier] within DNA 6-phosphate deoxy-α-D-glucopyranose GalU: galU UDP-2,3- BPET_RS17535 (L-alanyl-γ-D-glutamyl-meso- lipid IV (E. coli) 4-chloro-2-methyl- dehalogenase: isomerase: gap diaminopimelate containing) with (L-alanyl-γ-D-glutamyl- CMP-Kdo lipid IV (E. coli) A phosphoglucosamine dTDP-4- diacylglucosamine 2,6-diaminopimelate) tripeptide A superoxide dismutase: arsenate arsenate cis,cis-muconate BPET_RS07775 BPET_RS08255 D-glyceraldehyde aldehydo-D- UDP-α-D-glucose meso-2,6-diaminopimeloyl- 3-deoxy-D-manno- DHAP diphosphatase: lipid X BPET_RS20745 arsenate arsenate 6 mutase: glmM arabinose 5- dehydrorhamnose glycine) tetrapeptide octulosonic 2-oxo acid 4-chloro-2-methyl- glycerol an (S-diacyl-sn- an N -L- DNA combined with a long-linear 3-phosphate BPET_RS17535 3-deoxy-D-manno- superoxide reductase reductase trans-dienelactone an L-1- crotonobetainyl- α-D-glucopyranose 2-hydroxychromene- (3R,7Z,10Z,13Z,16Z)-3- 3-decaprenyl-4- an N-acyl-D- a monocarboxylic L-idonate α-D-glucosamine phosphate 3,5-epimerase: rfbC lipid-A- acid kinase: dehydrogenase cis,cis-muconate a glycerophosphodiester glyceryl)-L-cysteinyl- threonylcarbamoyladenine 37 L-carnitine exogenous DNA to form α-D-glucan uroporphyrinogen-I 2-hydroxyisobutyramide a uridine in tRNA benzaldehyde acetamide octulosonic acid dismutase [Fe]: sodB (glutaredoxin) (glutaredoxin) phosphatidylethanolamine CoA 2-carboxylate hydroxydocosatetraenoyl-CoA hydroxybenzoate glucosamine acid amide dTDP-4-dehydro- BPET_RS09890 subunit E2: cycloisomerase: [apolipoprotein] in tRNA a recombinational junction 2-hydroxychromene- tRNA 1-phosphate lipid X (P. putida) disaccharide transferase: carboxymethylenebutenolidase: glycerol Holliday junction 4-hydroxy-3- uroporphyrinogen amidase: N-acylglucosamine amidase: benzaldehyde L-idonate 5- amidase: β-L-rhamnose α BPET_RS17815 : arsC : arsC BPET_RS07775 tRNA 2-carboxylate acetoacetyl-CoA dihydrouridine synthase: lpxB 4-O-phospho- - hydrogen peroxide BPET_RS01550 kinase resolvase RuvX: ruvX 4-alpha- polyprenylbenzoate decarboxylase: BPET_RS11310 2-epimerase: BPET_RS11310 dehydrogenase: dehydrogenase: BPET_RS11310 fructose- UDP-N- lipid-A- BPET_RS24350 [+ 2 isozymes] [+ 4 isozymes] glycerophosphodiester threonylcarbamoyladenosine reductase: phbB dTDP-4- lipid A disaccharide Kdo-(2->6)-lipid IV 2-(2-chloro-4-methyl- apolipoprotein N- CoA transferase: glucanotransferase: isomerase: decarboxylase: ubiD BPET_RS01725 BPET_RS13290 synthase BPET_RS07025 BPET_RS20035 bisphosphate acetylglucosamine D-arabinofuranose A arsenite arsenite GlpK: glpK phosphodiesterase: ugpQ dehydratase: BPET_RS04375 crossover junction [+ 6 isozymes] [+ 6 isozymes] [+ 6 isozymes] disaccharide 6 BPET_RS01570 DusB: dusB 5-phosphate dehydrorhamnose (E. coli) α-Kdo-(2->6)- 5-oxofuran-2-yl)acetate 2-maleylacetate acyltransferase: lnt a cyclic N -L- BPET_RS12550 malQ (7Z,10Z,13Z,16Z)-3- an N-acyl-D- 5-dehydro- aldolase class II: diphosphorylase/ catalase: endodeoxyribonuclease trans-O- 2-decaprenylphenol coproporphyrinogen I 2-hydroxy-2- a monocarboxylate a 5,6-dihydrouridine benzoate acetate reductase: rfbD synthase: lpxB lipid IV (E. coli) mannosamine D-gluconate glucosamine-1- tetraacyldisaccharide 4'- A threonylcarbamoyladenosine RuvC: ruvC oxodocosatetraenoyl-CoA methylpropanoate BPET_RS18285 3-deoxy-8- lipid A BPET_RS20995 maleylacetate reductase: sn-glycerol resolution of recombinational hydroxybenzylidenepyruvate in tRNA phosphate N- dTDP-β-L-rhamnose kinase: BPET_RS13505 an N-acyl-(S-diacyl- 37 in tRNA a short 1,4- phosphooctulonate disaccharide KDO transferase: BPET_RS07790 3-phosphate a 2-acyl-1-lyso- junction formation catalase: crotono-betaine (R)-carnitinyl-CoA α acetyltransferase: synthase: kdsA (P. putida) BPET_RS24350 H O hydroxyl radical phosphatidylethanolamine sn-glyceryl)-L- of two intact strands -D-glucan lipid IV (E. coli) BPET_RS01720 2 2-methyl-cis- 2-methyl-trans [+ 2 isozymes] glmU A α-Kdo-(2->4)- arsenite arsenite cysteinyl-[lipoprotein] β-D-fructose 1,6- tetraacyldisaccharide 4'- N-acetyl-α-D- KDO-8P α-Kdo-(2->6)- dienelactone -dienelactone 3-oxoadipate bisphosphate kinase: BPET_RS13505 glucosamine lipid IV (E. coli) O A 2 DHAP 3-methyl-2- 5,10-methylene- 1915 α-D-mannose UDP-4-amino-4-deoxy- N-acetyl-β-D- UTP class 1 fructose- lipid IV 2-amino-6-[1-hydroxyethyl]- 2-chloro-trans maltotriose a glucan a pseudouridine 3-phenyl-2- L-idonate 1-phosphate A β-L-arabinopyranose oxaloacetate 4-guanidinobutyramide a folate D-ala propanoyl-CoA bisphosphatase: (P. putida) oxobutanoate tetrahydromethanopterin 7-methyl-7,8-dihydropterin -dienelactone in 23S rRNA oxopropanoate 1-phosphate mannosamine ribonucleoside UDP-N- 23S rRNA UDP-4-amino-4, 6- N-acylglucosamine BPET_RS13895 2-amino-4-hydroxy-6- phosphomannomutase/ phosphoenolpyruvate amidase: dihydrofolate acryloyl-CoA L-idonate 5- triphosphate acetylglucosamine α carboxymethylenebutenolidase: (pseudouridine(1915)- 4-hydroxyphenylpyruvate phosphoglucomutase: dideoxy-N-acetyl- 2-epimerase: D-alanine--D- dehydrogenase: -Kdo Amine and Polyamine Degradation 3-methyl-2-oxobutanoate hydroxymethyldihydropteridine 4-alpha- carboxykinase (GTP) BPET_RS11310 reductase: reductase: reductase: diphosphorylase/ BPET_RS01550 N(3))-methyltransferase dioxygenase: hppD beta-L-altrosamine BPET_RS13290 alanine ligase: F6P hydroxymethyltransferase: diphosphokinase: BPET_RS04150 glucanotransferase: BPET_RS20415 : BPET_RS14770 [+ 6 isozymes] BPET_RS20485 BPET_RS01300 BPET_RS20035 BPET_RS15635 glucosamine-1- 3-deoxy-manno- [1-(2-amino-7-methyl-4-oxo- RlmH: rlmH transaminase: pseC BPET_RS03525 panB malQ an N 3 - (2-hydroxyphenyl) D-mannopyranose UDP-β-L-threo- phosphoenol 5-dehydro- glucose-6- 2-chloromaleylacetate 4-guanidinobutanoate GlcNAc a 7,8-dihydrofolate acryloyl-CoA dUTP phosphate N- octulosonate creatinine degradation II 7,8-dihydro-3H-pteridin- 1915 D-alanyl-D-alanine 4-aminobutanoate 4-aminobutanoate urea degradation I choline degradation I methylpseudouridine acetate 6-phosphate pentapyranos-4-ulose pyruvate D-gluconate phosphate acetyltransferase: cytidylyltransferase: allantoin degradation 6-yl)]ethyl diphosphate degradation I degradation III in 23S rRNA isomerase: pgi glmU kdsB to ureidoglycolate II a glucan D-glucopyranose creatinine 2-dehydropantoate THMPT D-glucopyranose (ammonia producing) urea choline UDP-N-acetyl- 4-aminobutanoate CMP-Kdo 4-aminobutanoate urea choline 6-phosphate α-D-glucosamine (S)-(+)-allantoin 4-aminobutyrate- 4-aminobutyrate- carboxylase: dehydrogenase: -2-oxoglutarate N-methylhydantoin -2-oxoglutarate uca 2,5-diamino-6-(5- 4a-hydroxy-N 10 - UDP-N-acetyl- 34 UDP-2-acetamido-4-amino- N,N'- 55 N-acetyl-D- 6-aminohexanoate CTP BPET_RS14735 phosphatidylglycerolphosphate a 5-carboxymethylaminomethyluridine an α-limit dextrin a uridine (R)-3- CTP transaminase: transaminase: phospho-D-ribitylamino) α-D-glucosamine Leu 2,4,6-trideoxy-α-D-galactose ferroheme o propionamide urea-1-carboxylate formyltetrahydrofolate in tRNA diacetylchitobiose in tRNA hydroxybutanoate mannosamine cyclic dimer ribonucleoside hydantoin allantoate choline L-carnitine degradation I (1-oleoyl, 2-palmitoyl) UDP-4-amino-4, 6- gabT gabT pyrimidin-4(3H)-one UDP-N-acetylglucosamine tRNA (cytidine(34) beta-N- 4-alpha- tRNA 3-hydroxybutyrate N-acylglucosamine dCTP deaminase: allophanate dehydrogenase: bifunctional amidase: triphosphate utilization phosphatidylglycerophosphatase 4a-hydroxytetrahydrobiopterin 1-carboxyvinyltransferase: -2'-O)- dideoxy-N-acetyl- acetylhexosaminidase: glucanotransferase: 2-epimerase: amidase: heme A synthase: BPET_RS20775 4-aminobutyrate- 4-aminobutyrate- allantoate BPET_RS24540 diaminohydroxyphosphoribosylaminopyrimidine pseudouridine(55) dehydrogenase: BPET_RS11310 reductase: protein A: hydrolase: L-carnitine A: BPET_RS20065 dehydratase: BPET_RS03825 murA beta-L-altrosamine nagZ malQ BPET_RS23485 BPET_RS00880 -2-oxoglutarate -2-oxoglutarate betaine aldehyde deaminase/5-amino-6-(5-phosphoribosylamino) methyltransferase: synthase TruB: truB BPET_RS08120 BPET_RS13290 [+ 6 isozymes] BPET_RS15635 BPET_RS05590 amidohydrolase: atzF UDP-N-acetyl-α-D- transaminase: pseC N-acetyl-D- a α-limit dextrin N-acetyl-D- UTP transaminase: transaminase: an N 10 -formyl- BPET_RS23805 a pseudouridine 55 6-aminohexanoate BPET_RS14990 uracil reductase RibD: ribD 1-oleoyl-2-palmitoyl- glucosamine-enolpyruvate a 5-carboxymethylaminomethyl- UDP-2-acetamido-2,6- acetoacetate ferroheme a propanoate dCTP BPET_RS17265 BPET_RS17265 betaine aldehyde 5-amino-6-(5-phospho- α glucosamine with short branches glucosamine N-carbamoylsarcosine succinate carbamate phosphatidylglycerol 7,8-dihydrofolate 34 Leu dideoxy- -D-xylo-hex-4-ulose in tRNA linear dimer succinate dehydrogenase: D-ribitylamino)uracil 2'-O-methyluridine in tRNA semialdehyde (S)-ureidoglycine semialdehyde BPET_RS24540 NAD-dependent succinate- (R)-carnitinyl-CoA succinate- semialdehyde glycine betaine CoA transferase: dehydrogenase: BPET_RS12550 semialdehyde CO CoA transferase: BPET_RS17270 2 sarcosine dehydrogenase: (S)-ureidoglycolate BPET_RS12550 BPET_RS12320 succinate [+ 3 isozymes] γ-butyrobetainyl- crotonobetainyl- succinate CoA CoA gly a branched- a reduced chain a reduced a reduced a reduced a reduced a reduced plastocyanin sn-glycerol amino acid plastocyanin plastocyanin plastocyanin plastocyanin plastocyanin an oxidized 3-phosphate 2-amino-2- a branched- 2-dehydro- an oxidized deoxy-D- phosphonate a carbohydrate plastocyanin an an inorganic a C4- lipid II (meso an alkylphosphonate an aliphatic an aliphatic pro pro an oxidized an oxidized an oxidized an oxidized phosphonate a lyso- a quaternary a sulfonate a tricarboxylate a tricarboxylate a tricarboxylate phosphonate a lipopolysaccharide a dipeptide a dipeptide queuosine queuosine chain chromate chromate chromate 3-deoxy-D- plastocyanin a polyamine a polyamine gluconate 6- a fatty acid a polysaccharide oligopeptide anion dicarboxylate diaminopimelate an (aminoalkyl)phosphonate a carbohydrate sulfonate sulfonate glycine betaine glycine betaine plastocyanin plastocyanin plastocyanin plastocyanin dCTP phosphite phospholipid pyrimidine ammonium a lipopolysaccharide a lipopolysaccharide a lipopolysaccharide predicted amino acid gluconate phosphate predicted compound containing) ABC ABC predicted ABC predicted ABC predicted ABC transporter cytochrome- cytochrome transporter RS12145 RS01185 RS09310 RS16815 RS08290 RS03510 RS02025 RS03360 RS01525 RS20130 transporter of RS20130 RS02250 RS02835 RS09010 efflux transporter of RS09115 RS14440 transporter of RS00360 RS08710 RS11735 RS12155 RS19710 of a RS18350 RS08080 RS18740 RS18745 RS10075 RS09290 RS16770 RS11940 RS16305 RS20575 RS20640 c oxidase, RS09900 RS09895 RS09875 RS14345 RS20125 RS08665 RS17960 RS10100 RS17310 c oxidase of sn- phosphonate a lipopolysaccharide a carbohydrate branched- cbb3-type glycerol 3- chain a branched- 2-dehydro- phosphate 2-amino-2- a polysaccharide an an inorganic a C4- an alkylphosphonate a carbohydrate an aliphatic an aliphatic amino acid pro pro dCTP phosphonate a lyso- pyrimidine a sulfonate lipid II (meso a tricarboxylate a tricarboxylate a tricarboxylate phosphonate a dipeptide a dipeptide queuosine queuosine chain chromate chromate chromate 3-deoxy-D- a polyamine a polyamine deoxy-D- a quaternary a fatty acid oligopeptide anion dicarboxylate an (aminoalkyl)phosphonate a lipopolysaccharide a lipopolysaccharide a lipopolysaccharide a carbohydrate sulfonate sulfonate glycine betaine glycine betaine O O O O phosphite phospholipid diaminopimelate phosphonate amino acid gluconate 2 2 2 2 O gluconate ammonium a lipopolysaccharide O 2 containing) H O H O H O H O 2 compound a branched- 2 2 2 2 H O sn-glycerol H O 2 chain 2 3-phosphate amino acid This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.