Reviewing Seadornaviruses
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Development of a Real-Time Reverse Transcription
DEVELOPMENT AND EVALUATION OF A REAL-TIME POLYMERASE CHAIN REACTION ASSAY FOR EQUINE ENCEPHALOSIS VIRUS by Ntungufhadzeni Maclaughlin Rathogwa Submitted in partial fulfillment of the requirements for the degree Master of Veterinary Science (MSc) in the Department of Veterinary Tropical Diseases Faculty of Veterinary Science University of Pretoria South Africa Supervisor: Prof Moritz van Vuuren Co-supervisor: Dr Melvyn Quan November, 2011 © University of Pretoria TABLE OF CONTENTS DEDICATION .......................................................................................................................................... II DECLARATION ..................................................................................................................................... III ACKNOWLEDGEMENTS ...................................................................................................................... IV ABBREVIATIONS ................................................................................................................................... V LIST OF FIGURES ................................................................................................................................ VII LIST OF TABLES ................................................................................................................................ VIII ABSTRACT ............................................................................................................................................ IX 1. GENERAL INTRODUCTION ......................................................................................................... -
A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses
A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses. Laurent Dacheux, Minerva Cervantes-Gonzalez, Ghislaine Guigon, Jean-Michel Thiberge, Mathias Vandenbogaert, Corinne Maufrais, Valérie Caro, Hervé Bourhy To cite this version: Laurent Dacheux, Minerva Cervantes-Gonzalez, Ghislaine Guigon, Jean-Michel Thiberge, Mathias Vandenbogaert, et al.. A preliminary study of viral metagenomics of French bat species in contact with humans: identification of new mammalian viruses.. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e87194. 10.1371/journal.pone.0087194.s006. pasteur-01430485 HAL Id: pasteur-01430485 https://hal-pasteur.archives-ouvertes.fr/pasteur-01430485 Submitted on 9 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses Laurent Dacheux1*, Minerva Cervantes-Gonzalez1, -
Guide for Common Viral Diseases of Animals in Louisiana
Sampling and Testing Guide for Common Viral Diseases of Animals in Louisiana Please click on the species of interest: Cattle Deer and Small Ruminants The Louisiana Animal Swine Disease Diagnostic Horses Laboratory Dogs A service unit of the LSU School of Veterinary Medicine Adapted from Murphy, F.A., et al, Veterinary Virology, 3rd ed. Cats Academic Press, 1999. Compiled by Rob Poston Multi-species: Rabiesvirus DCN LADDL Guide for Common Viral Diseases v. B2 1 Cattle Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 2 Deer and Small Ruminants Please click on the principle system involvement Generalized viral disease Respiratory viral disease Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 3 Swine Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 4 Horses Please click on the principle system involvement Generalized viral diseases Neurological viral diseases Respiratory viral diseases Enteric viral diseases Abortifacient/neonatal viral diseases Viral infections affecting the skin Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. B2 5 Dogs Please click on the principle system involvement Generalized viral diseases Respiratory viral diseases Enteric viral diseases Reproductive/neonatal viral diseases Back to the Beginning DCN LADDL Guide for Common Viral Diseases v. -
Transmission and Evolution of Tick-Borne Viruses
Available online at www.sciencedirect.com ScienceDirect Transmission and evolution of tick-borne viruses Doug E Brackney and Philip M Armstrong Ticks transmit a diverse array of viruses such as tick-borne Bourbon viruses in the U.S. [6,7]. These trends are driven encephalitis virus, Powassan virus, and Crimean-Congo by the proliferation of ticks in many regions of the world hemorrhagic fever virus that are reemerging in many parts of and by human encroachment into tick-infested habitats. the world. Most tick-borne viruses (TBVs) are RNA viruses that In addition, most TBVs are RNA viruses that mutate replicate using error-prone polymerases and produce faster than DNA-based organisms and replicate to high genetically diverse viral populations that facilitate their rapid population sizes within individual hosts to form a hetero- evolution and adaptation to novel environments. This article geneous population of closely related viral variants reviews the mechanisms of virus transmission by tick vectors, termed a mutant swarm or quasispecies [8]. This popula- the molecular evolution of TBVs circulating in nature, and the tion structure allows RNA viruses to rapidly evolve and processes shaping viral diversity within hosts to better adapt into new ecological niches, and to develop new understand how these viruses may become public health biological properties that can lead to changes in disease threats. In addition, remaining questions and future directions patterns and virulence [9]. The purpose of this paper is to for research are discussed. review the mechanisms of virus transmission among Address vector ticks and vertebrate hosts and to examine the Department of Environmental Sciences, Center for Vector Biology & diversity and molecular evolution of TBVs circulating Zoonotic Diseases, The Connecticut Agricultural Experiment Station, in nature. -
Generic Amplification and Next Generation Sequencing Reveal
Dinçer et al. Parasites & Vectors (2017) 10:335 DOI 10.1186/s13071-017-2279-1 RESEARCH Open Access Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey Ender Dinçer1†, Annika Brinkmann2†, Olcay Hekimoğlu3, Sabri Hacıoğlu4, Katalin Földes4, Zeynep Karapınar5, Pelin Fatoş Polat6, Bekir Oğuz5, Özlem Orunç Kılınç7, Peter Hagedorn2, Nurdan Özer3, Aykut Özkul4, Andreas Nitsche2 and Koray Ergünay2,8* Abstract Background: Ticks are involved with the transmission of several viruses with significant health impact. As incidences of tick-borne viral infections are rising, several novel and divergent tick- associated viruses have recently been documented to exist and circulate worldwide. This study was performed as a cross-sectional screening for all major tick-borne viruses in several regions in Turkey. Next generation sequencing (NGS) was employed for virus genome characterization. Ticks were collected at 43 locations in 14 provinces across the Aegean, Thrace, Mediterranean, Black Sea, central, southern and eastern regions of Anatolia during 2014–2016. Following morphological identification, ticks were pooled and analysed via generic nucleic acid amplification of the viruses belonging to the genera Flavivirus, Nairovirus and Phlebovirus of the families Flaviviridae and Bunyaviridae, followed by sequencing and NGS in selected specimens. Results: A total of 814 specimens, comprising 13 tick species, were collected and evaluated in 187 pools. Nairovirus and phlebovirus assays were positive in 6 (3.2%) and 48 (25.6%) pools. All nairovirus sequences were closely-related to the Crimean-Congo hemorrhagic fever virus (CCHFV) strain AP92 and formed a phylogenetically distinct cluster among related strains. -
A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus B
viruses Article A New Orbivirus Isolated from Mosquitoes in North-Western Australia Shows Antigenic and Genetic Similarity to Corriparta Virus but Does Not Replicate in Vertebrate Cells Jessica J. Harrison 1,†, David Warrilow 2,†, Breeanna J. McLean 1, Daniel Watterson 1, Caitlin A. O’Brien 1, Agathe M.G. Colmant 1, Cheryl A. Johansen 3, Ross T. Barnard 1, Sonja Hall-Mendelin 2, Steven S. Davis 4, Roy A. Hall 1 and Jody Hobson-Peters 1,* 1 Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia 4072, Australia; [email protected] (J.J.H.); [email protected] (B.J.M.); [email protected] (D.W.); [email protected] (C.A.O.B.); [email protected] (A.M.G.C.); [email protected] (R.T.B.); [email protected] (R.A.H.) 2 Public Health Virology Laboratory, Department of Health, Queensland Government, P.O. Box 594, Archerfield 4108, Australia; [email protected] (D.W.); [email protected] (S.H.-M.) 3 School of Pathology and Laboratory Medicine, The University of Western Australia, Nedlands 6009, Australia; [email protected] 4 Berrimah Veterinary Laboratory, Department of Primary Industries and Fisheries, Darwin 0828, Australia; [email protected] * Correspondence: [email protected]; Tel.: +61-7-3365-4648 † These authors contributed equally to the work. Academic Editor: Karyn Johnson Received: 19 February 2016; Accepted: 10 May 2016; Published: 20 May 2016 Abstract: The discovery and characterisation of new mosquito-borne viruses provides valuable information on the biodiversity of vector-borne viruses and important insights into their evolution. -
Dengue Fever, Chikungunya and the Zika Virus
#57 Focus Dengue Fever, Chikungunya and the Zika Virus Arboviruses are a group of virus that can be southern regions of mainland France and transmitted between animals and humans, on the island of Réunion, Aedes albopictus and they are common to humans and many provides the sole vector for transmission. vertebrates (mammals, birds, reptiles, Transmission amphibians). There are over 500 species of Dengue Fever, Chikungunya and the Zika arbovirus, sub-divided into approximately virus are all transmitted in the same way. 10 different families, including Togaviridae, Human to human transmission takes place Flaviviridae, Reoviridae, Rhabdoviridae, International and Bunyaviridae. These viruses have RNA by mosquito vector in urban areas during with a very heterogeneous structure and are epidemics: the mosquito picks up the virus transmitted via bites from hematophagous when it bites a carrier, and then transmits it arthropods such as mosquitoes, sandflies, to a healthy person with another bite. The ticks and mites (arbovirus is short for mosquito bites people outside their homes arthropod-borne virus). throughout the day, with peak activity at dawn and dusk. The mosquitoes live in Chikungunya urban areas and lay their eggs in pools of stagnant water (250 eggs every 2 days), This disease was first described in Tanzania where they develop into larvae. The eggs in 1952. It is caused by an arbovirus of the are resistant to the cold in winter and hatch genus Alphavirus from the Togaviridae family. when weather conditions improve. It was then also described in Africa, Southeast Aedes albopictus is spreading globally; it Asia, the Indian subcontinent and the Indian has adapted to both tropical and temperate Ocean. -
Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris Spelaea)
viruses Article Diversity and Evolution of Viral Pathogen Community in Cave Nectar Bats (Eonycteris spelaea) Ian H Mendenhall 1,* , Dolyce Low Hong Wen 1,2, Jayanthi Jayakumar 1, Vithiagaran Gunalan 3, Linfa Wang 1 , Sebastian Mauer-Stroh 3,4 , Yvonne C.F. Su 1 and Gavin J.D. Smith 1,5,6 1 Programme in Emerging Infectious Diseases, Duke-NUS Medical School, Singapore 169857, Singapore; [email protected] (D.L.H.W.); [email protected] (J.J.); [email protected] (L.W.); [email protected] (Y.C.F.S.) [email protected] (G.J.D.S.) 2 NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore 119077, Singapore 3 Bioinformatics Institute, Agency for Science, Technology and Research, Singapore 138671, Singapore; [email protected] (V.G.); [email protected] (S.M.-S.) 4 Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore 5 SingHealth Duke-NUS Global Health Institute, SingHealth Duke-NUS Academic Medical Centre, Singapore 168753, Singapore 6 Duke Global Health Institute, Duke University, Durham, NC 27710, USA * Correspondence: [email protected] Received: 30 January 2019; Accepted: 7 March 2019; Published: 12 March 2019 Abstract: Bats are unique mammals, exhibit distinctive life history traits and have unique immunological approaches to suppression of viral diseases upon infection. High-throughput next-generation sequencing has been used in characterizing the virome of different bat species. The cave nectar bat, Eonycteris spelaea, has a broad geographical range across Southeast Asia, India and southern China, however, little is known about their involvement in virus transmission. -
Diversity, Geography, and Host Range of Emerging Mosquito-Associated Viruses — China, 2010–2020
China CDC Weekly Commentary Diversity, Geography, and Host Range of Emerging Mosquito-Associated Viruses — China, 2010–2020 Yuan Fang1,2; Tian Hang2; Jinbo Xue1,2; Yuanyuan Li1; Lanhua Li3; Zixin Wei1; Limin Yang1; Yi Zhang1,2,# Epidemics of emerging and neglected infectious mosquitoes and humans in China even before the diseases are severe threats to public health and are international public health emergency. The sudden largely driven by the promotion of globalization and by outbreak of egg drop syndrome caused by the international multi-border cooperation. Mosquito- Tembusu virus (TMUV) quickly swept the coastal borne viruses are among the most important agents of provinces and neighboring regions in 2010, resulting these diseases, with an associated mortality of over one in severe economic loss in the poultry industry (8). To million people worldwide (1). The well-known date, records of TMUV have covered 18 provinces in mosquito-borne diseases (MBDs) with global scale China, and are mainly comprised of reports from the include malaria, dengue fever, chikungunya, and West last decade (9). Similarly, the Getah virus, which is Nile fever, which are the largest contributor to the mainly transmitted between mosquitoes and domestic disease burden. However, the morbidity of some livestock, has been spreading across China since 2010 MBDs has sharply decreased due to expanded (10), with an outbreak on a swine farm in Hunan in programs on immunization and more efficient control 2017 (11). Moreover, despite having a relatively short strategies (e.g., for Japanese encephalitis and yellow history (first detected in 1997), the Liao ning virus fever). Nevertheless, the global distribution and burden (LNV) has been recorded in most of Northern China, of dengue fever, chikungunya, and Zika fever are including Beijing. -
Origin and Evolution of Emerging Liaoning Virus(Genus Seadornavirus, Family Reoviridae)
Origin and Evolution of Emerging Liaoning Virusgenus Seadornavirus, family Reoviridae) Jun Zhang Shandong University of Technology Hong Liu ( [email protected] ) Shandong University of Technology https://orcid.org/0000-0002-5182-4750 Jiahui Wang Shandong University of Technology Jiheng Wang Shandong University of Technology Jianming Zhang Shandong University of Technology Jiayue Wang Shandong University of Technology Xin Zhang Shandong University of Technology Hongfang Ji Shandong University of Technology Zhongfen Ding Shandong University of Technology Han Xia Chinese Academy of Sciences Chunyang Zhang Shandong University of Technology Qian Zhao Shandong University of Technology Guodong Liang Chinese Center for Disease Control and Prevention Research Keywords: Liaoning virus, LNV, Seadornavirus, Evolution, Migration Posted Date: January 15th, 2020 DOI: https://doi.org/10.21203/rs.2.20915/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/13 Abstract Background:Liaoning virus(LNV) is a member of the genus Seadornavirus, family Reoviridae and has been isolated from kinds of sucking insects in Asia and Australia. However, there are no systematic studies describe the molecular genetic evolution and migration of LNVs isolated from different time, regions and vectors. Methods:Here, a phylogenetic analysis using Bayesian Markov chain Monte Carlo simulations was conducted on the LNVs isolated from a variety of vectors during 1990-2014,worldwide. Results:The phylogenetic analysis demonstrated that the LNV could be divided into 3 genotypes, of which genotype 1 mainly composed of LNVs isolated from Australia during 1990 to 2014 as well as the original LNV strain(LNV-NE97-31) isolated from Liaoning province in northern China in 1997,genotype 2 comprised of the isolates all from Xinjiang province in western China and genotype 3 consisted the isolates from Qinghai and Shanxi province of central China. -
Isolation and Genetic Characterization of Mangshi Virus: a Newly Discovered Seadornavirus of the Reoviridae Family Found in Yunnan Province, China
RESEARCH ARTICLE Isolation and Genetic Characterization of Mangshi Virus: A Newly Discovered Seadornavirus of the Reoviridae Family Found in Yunnan Province, China Jinglin Wang1,2*, Huachun Li1*, Yuwen He1, Yang Zhou1, Jingxing Meng1, Wuyang Zhu3, Hongyu Chen1, Defang Liao1, Yunping Man1 1 Yunnan Tropical and Subtropical Animal Viral Disease Laboratory, Yunnan Animal Science and Veterinary Institute, Kunming, Yunnan province, China, 2 State Key Laboratory of Veterinary Etiological Biology, Lanzhou, Gansu province, China, 3 State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China * [email protected] (JW); [email protected] (HL) OPEN ACCESS Citation: Wang J, Li H, He Y, Zhou Y, Meng J, Zhu Abstract W, et al. (2015) Isolation and Genetic Characterization of Mangshi Virus: A Newly Background Discovered Seadornavirus of the Reoviridae Family Seadornavirus is a genus of viruses in the family Reoviridae, which consists of Banna virus, Found in Yunnan Province, China. PLoS ONE 10 (12): e0143601. doi:10.1371/journal.pone.0143601 Kadipiro virus, and Liao ning virus. Banna virus is considered a potential pathogen for zoo- notic diseases. Here, we describe a newly discovered Seadornavirus isolated from mosqui- Editor: Houssam Attoui, The Pirbright Institute, UNITED KINGDOM tos (Culex tritaeniorhynchus) in Yunnan Province, China, which is related to Banna virus, and referred to as Mangshi virus. Received: June 16, 2015 Accepted: November 6, 2015 Methods and Results Published: December 2, 2015 The Mangshi virus was isolated by cell culture in Aedes albopictus C6/36 cells, in which it rep- Copyright: © 2015 Wang et al. -
Mosquito-Borne Viruses, Insect-Specific
FULL PAPER Virology Mosquito-borne viruses, insect-specific flaviviruses (family Flaviviridae, genus Flavivirus), Banna virus (family Reoviridae, genus Seadornavirus), Bogor virus (unassigned member of family Permutotetraviridae), and alphamesoniviruses 2 and 3 (family Mesoniviridae, genus Alphamesonivirus) isolated from Indonesian mosquitoes SUPRIYONO1), Ryusei KUWATA1,2), Shun TORII1), Hiroshi SHIMODA1), Keita ISHIJIMA3), Kenzo YONEMITSU1), Shohei MINAMI1), Yudai KURODA3), Kango TATEMOTO3), Ngo Thuy Bao TRAN1), Ai TAKANO1), Tsutomu OMATSU4), Tetsuya MIZUTANI4), Kentaro ITOKAWA5), Haruhiko ISAWA6), Kyoko SAWABE6), Tomohiko TAKASAKI7), Dewi Maria YULIANI8), Dimas ABIYOGA9), Upik Kesumawati HADI10), Agus SETIYONO10), Eiichi HONDO11), Srihadi AGUNGPRIYONO10) and Ken MAEDA1,3)* 1)Laboratory of Veterinary Microbiology, Joint Faculty of Veterinary Medicine, Yamaguchi University, 1677-1 Yoshida, Yamaguchi 753-8515, Japan 2)Faculty of Veterinary Medicine, Okayama University of Science, 1-3 Ikoino-oka, Imabari, Ehime 794-8555, Japan 3)Department of Veterinary Science, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan 4)Research and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8508, Japan 5)Pathogen Genomics Center, National Institute of Infectious Diseases, 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan 6)Department of Medical Entomology, National Institute of Infectious Diseases, 1-23-1