Anatomically Modern Carboniferous Harvestmen Demonstrate Early Cladogenesis and Stasis in Opiliones
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Comparative Functional Morphology of Attachment Devices in Arachnida
Comparative functional morphology of attachment devices in Arachnida Vergleichende Funktionsmorphologie der Haftstrukturen bei Spinnentieren (Arthropoda: Arachnida) DISSERTATION zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) an der Mathematisch-Naturwissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel vorgelegt von Jonas Otto Wolff geboren am 20. September 1986 in Bergen auf Rügen Kiel, den 2. Juni 2015 Erster Gutachter: Prof. Stanislav N. Gorb _ Zweiter Gutachter: Dr. Dirk Brandis _ Tag der mündlichen Prüfung: 17. Juli 2015 _ Zum Druck genehmigt: 17. Juli 2015 _ gez. Prof. Dr. Wolfgang J. Duschl, Dekan Acknowledgements I owe Prof. Stanislav Gorb a great debt of gratitude. He taught me all skills to get a researcher and gave me all freedom to follow my ideas. I am very thankful for the opportunity to work in an active, fruitful and friendly research environment, with an interdisciplinary team and excellent laboratory equipment. I like to express my gratitude to Esther Appel, Joachim Oesert and Dr. Jan Michels for their kind and enthusiastic support on microscopy techniques. I thank Dr. Thomas Kleinteich and Dr. Jana Willkommen for their guidance on the µCt. For the fruitful discussions and numerous information on physical questions I like to thank Dr. Lars Heepe. I thank Dr. Clemens Schaber for his collaboration and great ideas on how to measure the adhesive forces of the tiny glue droplets of harvestmen. I thank Angela Veenendaal and Bettina Sattler for their kind help on administration issues. Especially I thank my students Ingo Grawe, Fabienne Frost, Marina Wirth and André Karstedt for their commitment and input of ideas. -
Opiliones, Palpatores, Caddoidea)
Shear, W. A. 1975 . The opilionid family Caddidae in North America, with notes on species from othe r regions (Opiliones, Palpatores, Caddoidea) . J. Arachnol . 2:65-88 . THE OPILIONID FAMILY CADDIDAE IN NORTH AMERICA, WITH NOTES ON SPECIES FROM OTHER REGION S (OPILIONES, PALPATORES, CADDOIDEA ) William A . Shear Biology Departmen t Hampden-Sydney, College Hampden-Sydney, Virginia 23943 ABSTRACT Species belonging to the opilionid genera Caddo, Acropsopilio, Austropsopilio and Cadella are herein considered to constitute the family Caddidae . The subfamily Caddinae contains the genu s Caddo ; the other genera are placed in the subfamily Acropsopilioninae. It is suggested that the palpatorid Opiliones be grouped in three superfamilies : Caddoidea (including the family Caddidae) , Phalangioidea (including the families Phalangiidae, Liobunidae, Neopilionidae and Sclerosomatidae ) and Troguloidea (including the families Trogulidae, Nemostomatidae, Ischyropsalidae an d Sabaconidae). North American members of the Caddidae are discussed in detail, and a new species , Caddo pepperella, is described . The North American caddids appear to be mostly parthenogenetic, an d C. pepperella is very likely a neotenic isolate of C. agilis. Illustrations and taxonomic notes ar e provided for the majority of the exotic species of the family . INTRODUCTION Considerable confusion has surrounded the taxonomy of the order Opiliones in North America, since the early work of the prolific Nathan Banks, who described many of ou r species in the last decade of the 1800's and the first few years of this century. For many species, no additional descriptive material has been published following the original de- scriptions, most of which were brief and concentrated on such characters as color and body proportions . -
2017 AAS Abstracts
2017 AAS Abstracts The American Arachnological Society 41st Annual Meeting July 24-28, 2017 Quéretaro, Juriquilla Fernando Álvarez Padilla Meeting Abstracts ( * denotes participation in student competition) Abstracts of keynote speakers are listed first in order of presentation, followed by other abstracts in alphabetical order by first author. Underlined indicates presenting author, *indicates presentation in student competition. Only students with an * are in the competition. MAPPING THE VARIATION IN SPIDER BODY COLOURATION FROM AN INSECT PERSPECTIVE Ajuria-Ibarra, H. 1 Tapia-McClung, H. 2 & D. Rao 1 1. INBIOTECA, Universidad Veracruzana, Xalapa, Veracruz, México. 2. Laboratorio Nacional de Informática Avanzada, A.C., Xalapa, Veracruz, México. Colour variation is frequently observed in orb web spiders. Such variation can impact fitness by affecting the way spiders are perceived by relevant observers such as prey (i.e. by resembling flower signals as visual lures) and predators (i.e. by disrupting search image formation). Verrucosa arenata is an orb-weaving spider that presents colour variation in a conspicuous triangular pattern on the dorsal part of the abdomen. This pattern has predominantly white or yellow colouration, but also reflects light in the UV part of the spectrum. We quantified colour variation in V. arenata from images obtained using a full spectrum digital camera. We obtained cone catch quanta and calculated chromatic and achromatic contrasts for the visual systems of Drosophila melanogaster and Apis mellifera. Cluster analyses of the colours of the triangular patch resulted in the formation of six and three statistically different groups in the colour space of D. melanogaster and A. mellifera, respectively. Thus, no continuous colour variation was found. -
Information to Users
INFORMATION TO USERS The most advanced technology has been used to photograph and reproduce this manuscript from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMI directly to order. University Microfilms International A Bell & Howell Information Company 300 North Zeeb Road. Ann Arbor, Ml 48106-1346 USA 313/761-4700 800/521-0600 Order Number 9111799 Evolutionary morphology of the locomotor apparatus in Arachnida Shultz, Jeffrey Walden, Ph.D. -
De Hooiwagens 1St Revision14
Table of Contents INTRODUCTION ............................................................................................................................................................ 2 CHARACTERISTICS OF HARVESTMEN ............................................................................................................................ 2 GROUPS SIMILAR TO HARVESTMEN ............................................................................................................................. 3 PREVIOUS PUBLICATIONS ............................................................................................................................................. 3 BIOLOGY ......................................................................................................................................................................... 3 LIFE CYCLE ..................................................................................................................................................................... 3 MATING AND EGG-LAYING ........................................................................................................................................... 4 FOOD ............................................................................................................................................................................. 4 DEFENCE ........................................................................................................................................................................ 4 PHORESY, -
Genetic Change and Rates of Cladogenesis
GENETIC CHANGE AND RATES OF CLADOGENESIS JOHN C. AVISE* AND FRANCISCO J. AYALA Depariment of Genetics, University of Californiu, Davis, California 95616 Manuscript received May 12, 1975 Revised copy received July 28, 1975 ABSTRACT Models are introduced which predict ratios of mean levels of genetic divergence in species-rich versus species-poor phylads under two competing assumptions: (1) genetic differentiation is a function of time, unrelated to the number of cladogenetic events and (2) genetic differentiation is proportional to the number of speciation events in the group. The models are simple, general, and biologically real, but not precise. They lead to qualitatively distinct predic- tions about levels of genetic divergence depending upon the relationship between rates of speciation and amount of genetic change. When genetic dis- tance between species is a function of time, mean genetic distances in speciose and depauperate phylads of equal evolutionary age are very similar. On the contrary, when genetic distance is a function of the number of speciations in the history of a phylad, the ratio of mean genetic distances separating species in speciose versus depauperate phylads is greater than one, and increases rapidly as the frequency of speciations in one group relative to the other increases. The models may be tested with data from natural populations to assess (1) possible correlations between rates of anagenesis and cladogenesis and (2) the amount of genetic differentiation accompanying the speciation process. The data collected in electrophoretic surveys and other kinds of studies can be used to test the predictions of the models. For this purpose genetic distances need to be measured in speciose and depauperate phylads of equal evolutionary age. -
Phylogenetic Definitions in the Pre-Phylocode Era; Implications for Naming Clades Under the Phylocode
PaleoBios 27(1):1–6, April 30, 2007 © 2006 University of California Museum of Paleontology Phylogenetic definitions in the pre-PhyloCode era; implications for naming clades under the PhyloCode MiChAel P. TAylor Palaeobiology research Group, School of earth and environmental Sciences, University of Portsmouth, Portsmouth Po1 3Ql, UK; [email protected] The last twenty years of work on phylogenetic nomenclature have given rise to many names and definitions that are now considered suboptimal. in formulating permanent definitions under the PhyloCode when it is implemented, it will be necessary to evaluate the corpus of existing names and make judgements about which to establish and which to discard. This is not straightforward, because early definitions are often inexplicit and ambiguous, generally do not meet the requirements of the PhyloCode, and in some cases may not be easily recognizable as phylogenetic definitions at all. recognition of synonyms is also complicated by the use of different kinds of specifiers (species, specimens, clades, genera, suprageneric rank-based names, and vernacular names) and by definitions whose content changes under different phylogenetic hypotheses. in light of these difficulties, five principles are suggested to guide the interpreta- tion of pre-PhyloCode clade-names and to inform the process of naming clades under the PhyloCode: (1) do not recognize “accidental” definitions; (2) malformed definitions should be interpreted according to the intention of the author when and where this is obvious; (3) apomorphy-based and other definitions must be recognized as well as node-based and stem-based definitions; (4) definitions using any kind of specifier taxon should be recognized; and (5) priority of synonyms and homonyms should guide but not prescribe. -
Lineages, Splits and Divergence Challenge Whether the Terms Anagenesis and Cladogenesis Are Necessary
Biological Journal of the Linnean Society, 2015, , – . With 2 figures. Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary FELIX VAUX*, STEVEN A. TREWICK and MARY MORGAN-RICHARDS Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand Received 3 June 2015; revised 22 July 2015; accepted for publication 22 July 2015 Using the framework of evolutionary lineages to separate the process of evolution and classification of species, we observe that ‘anagenesis’ and ‘cladogenesis’ are unnecessary terms. The terms have changed significantly in meaning over time, and current usage is inconsistent and vague across many different disciplines. The most popular definition of cladogenesis is the splitting of evolutionary lineages (cessation of gene flow), whereas anagenesis is evolutionary change between splits. Cladogenesis (and lineage-splitting) is also regularly made synonymous with speciation. This definition is misleading as lineage-splitting is prolific during evolution and because palaeontological studies provide no direct estimate of gene flow. The terms also fail to incorporate speciation without being arbitrary or relative, and the focus upon lineage-splitting ignores the importance of divergence, hybridization, extinction and informative value (i.e. what is helpful to describe as a taxon) for species classification. We conclude and demonstrate that evolution and species diversity can be considered with greater clarity using simpler, more transparent terms than anagenesis and cladogenesis. Describing evolution and taxonomic classification can be straightforward, and there is no need to ‘make words mean so many different things’. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 00, 000–000. -
Diversity-Dependent Cladogenesis Throughout Western Mexico: Evolutionary Biogeography of Rattlesnakes (Viperidae: Crotalinae: Crotalus and Sistrurus)
City University of New York (CUNY) CUNY Academic Works Publications and Research New York City College of Technology 2016 Diversity-dependent cladogenesis throughout western Mexico: Evolutionary biogeography of rattlesnakes (Viperidae: Crotalinae: Crotalus and Sistrurus) Christopher Blair CUNY New York City College of Technology Santiago Sánchez-Ramírez University of Toronto How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/ny_pubs/344 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] 1Blair, C., Sánchez-Ramírez, S., 2016. Diversity-dependent cladogenesis throughout 2 western Mexico: Evolutionary biogeography of rattlesnakes (Viperidae: Crotalinae: 3 Crotalus and Sistrurus ). Molecular Phylogenetics and Evolution 97, 145–154. 4 https://doi.org/10.1016/j.ympev.2015.12.020. © 2016. This manuscript version is made 5 available under the CC-BY-NC-ND 4.0 license. 6 7 8 Diversity-dependent cladogenesis throughout western Mexico: evolutionary 9 biogeography of rattlesnakes (Viperidae: Crotalinae: Crotalus and Sistrurus) 10 11 12 CHRISTOPHER BLAIR1*, SANTIAGO SÁNCHEZ-RAMÍREZ2,3,4 13 14 15 1Department of Biological Sciences, New York City College of Technology, Biology PhD 16 Program, Graduate Center, The City University of New York, 300 Jay Street, Brooklyn, 17 NY 11201, USA. 18 2Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks 19 Street, Toronto, ON, M5S 3B2, Canada. 20 3Department of Natural History, Royal Ontario Museum, 100 Queen’s Park, Toronto, 21 ON, M5S 2C6, Canada. 22 4Present address: Environmental Genomics Group, Max Planck Institute for 23 Evolutionary Biology, August-Thienemann-Str. -
A Phylogenetic Analysis of the Basal Ornithischia (Reptilia, Dinosauria)
A PHYLOGENETIC ANALYSIS OF THE BASAL ORNITHISCHIA (REPTILIA, DINOSAURIA) Marc Richard Spencer A Thesis Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements of the degree of MASTER OF SCIENCE December 2007 Committee: Margaret M. Yacobucci, Advisor Don C. Steinker Daniel M. Pavuk © 2007 Marc Richard Spencer All Rights Reserved iii ABSTRACT Margaret M. Yacobucci, Advisor The placement of Lesothosaurus diagnosticus and the Heterodontosauridae within the Ornithischia has been problematic. Historically, Lesothosaurus has been regarded as a basal ornithischian dinosaur, the sister taxon to the Genasauria. Recent phylogenetic analyses, however, have placed Lesothosaurus as a more derived ornithischian within the Genasauria. The Fabrosauridae, of which Lesothosaurus was considered a member, has never been phylogenetically corroborated and has been considered a paraphyletic assemblage. Prior to recent phylogenetic analyses, the problematic Heterodontosauridae was placed within the Ornithopoda as the sister taxon to the Euornithopoda. The heterodontosaurids have also been considered as the basal member of the Cerapoda (Ornithopoda + Marginocephalia), the sister taxon to the Marginocephalia, and as the sister taxon to the Genasauria. To reevaluate the placement of these taxa, along with other basal ornithischians and more derived subclades, a phylogenetic analysis of 19 taxonomic units, including two outgroup taxa, was performed. Analysis of 97 characters and their associated character states culled, modified, and/or rescored from published literature based on published descriptions, produced four most parsimonious trees. Consistency and retention indices were calculated and a bootstrap analysis was performed to determine the relative support for the resultant phylogeny. The Ornithischia was recovered with Pisanosaurus as its basalmost member. -
Behavioral Roles of the Sexually Dimorphic Structures in the Male Harvestman, Phalangium Opilio (Opiliones, Phalangiidae)
1763 Behavioral roles of the sexually dimorphic structures in the male harvestman, Phalangium opilio (Opiliones, Phalangiidae) Rodrigo H. Willemart, Jean-Pierre Farine, Alfredo V. Peretti, and Pedro Gnaspini Abstract: In various animal species, male sexual dimorphic characters may be used during intrasexual contests as orna- ments to attract females, or to hold them before, during, or after copulation. In the well-known harvestman, Phalangium opilio L., 1758, the behavioral functions of these male sexually dimorphic structures have never been studied in detail. Therefore, in addition to a morphometric study, 21 male contests and 43 sexual interactions were analyzed. Our observa- tions revealed that during contests, the male cheliceral horns form a surface by which the contestants use to push each other face-to-face while rapidly tapping their long pedipalps against the pedipalps of the opponent, occasionally twisting the opponent’s pedipalp. Scanning electron micrographs revealed contact mechanoreceptors on the pedipalp that would de- tect the intensity–frequency of contact with the contender’s pedipalp. Larger males won almost all contests, whereas the loser rapidly fled. During sexual interactions, the longer pedipalps of the male held legs IV of the female, whereas males with shorter pedipalps held the female by legs III. No contact with the male pedipalps and chelicerae by the females was visible before, during, or after copulation. Soon after copulating, males typically bent over the female, positioning their cheliceral horns against the females’s dorsum. Consequently, our data show that the cheliceral horns and the longer pedi- palps of the male seem to play an important role, during both intersexual and intrasexual encountering.