Organisms, Diversity & Evolution 4 (2004) 319–340 www.elsevier.de/ode

Is Ellipura monophyletic? A combined analysis of basal hexapod relationships with emphasis on the origin of Gonzalo Giribeta,Ã, Gregory D.Edgecombe b, James M.Carpenter c, Cyrille A.D’Haese d, Ward C.Wheeler c aDepartment of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA bAustralian Museum, 6 College Street, Sydney, New South Wales 2010, cDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA dFRE 2695 CNRS, De´partement Syste´matique et Evolution, Muse´um National d’Histoire Naturelle, 45 rue Buffon, F-75005 Paris, France

Received 27 February 2004; accepted 18 May 2004


Hexapoda includes 33 commonly recognized orders, most of them insects.Ongoing controversy concerns the grouping of and Collembola as a Ellipura, the of , a single or multiple origins of entognathy, and the monophyly or of the silverfish ( and s.s.) with respect to other dicondylous insects.Here we analyze relationships among basal hexapod orders via a cladistic analysis of sequence data for five molecular markers and 189 morphological characters in a simultaneous analysis framework using myriapod and outgroups.Using a sensitivity analysis approach and testing for stability, the most congruent parameters resolve Tricholepidion as to the remaining , whereas most suboptimal parameter sets group Tricholepidion with Zygentoma.Stable hypotheses include the monophyly of Diplura, and a sister group relationship between Diplura and Protura, contradicting the Ellipura hypothesis.Hexapod monophyly is contradicted by an alliance between Collembola, Crustacea and Ectognatha (i.e., exclusive of Diplura and Protura) in molecular and combined analyses. r 2004 Elsevier GmbH.All rights reserved.

Keywords: Protura; Diplura; Zygentoma; Tricholepidion; Phylogeny; evolution

Introduction that of insects.Due to the great interest in insects, most of the major lineages of the group have long been The origin and have long described or identified, and currently 33 orders of captivated biologists, perhaps because insects constitute hexapods are commonly recognized (Naumann 1991; the largest group of organisms.Indeed, no other Klass et al.2002 ).Hexapod relationships have been has recorded diversity remotely comparable to studied using an array of different techniques, and several phylogenetic hypotheses based on morphological ÃCorresponding author. cladistic (non-numerical) analyses have been proposed E-mail address: [email protected] (G. Giribet). (e.g., Hennig 1969; Kristensen 1975, 1981, 1991, 1995,

1439-6092/$ - see front matter r 2004 Elsevier GmbH.All rights reserved. doi:10.1016/j.ode.2004.05.001 ARTICLE IN PRESS 320 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

1998; Kukalova´ -Peck 1991).The incorporation of the first two issues listed above.No sequence data for explicit numerical analyses (Whiting et al.1997 ; Bitsch the zygentoman families Lepidotrichidae and Nicoletii- and Bitsch 1998, 2000; Carpenter and Wheeler 1999; dae, or the archaeognathan were Beutel and Gorb 2001; Wheeler et al.2001 ), and of included in those studies. Nardi et al.(2003) included sources of data other than morphology (Whiting et al. data for Tricholepedion in their analysis of hexapod 1997; Carpenter and Wheeler 1999; Carapelli et al.2000 ; relationships based on mitochondrial genomes. Luan et Wheeler et al.2001 ; D’Haese 2002a; Hovmo¨ ller et al. al.(2003) analyzed 18S and 28S rRNA sequence data of 2002; Whiting 2002; Luan et al.2003 ; Ogden and several basal hexapods and found monophyly of Whiting 2003), have yielded more testable hypotheses. Diplura as well as monophyly of Diplura+Protura However, the relationships among the sister groups of (see also D’Haese 2002b).Other recent work has used insects, or ‘basal’ hexapods, have received little attention molecular data to investigate basal hexapod relation- from the perspective of molecular data. ships to a certain extent, although in the context of True insects (Ectognatha Hennig or Insecta collembolan evolution (D’Haese 2002a), or higher sensu Kristensen) contain about two dozen orders of relationships (Wheeler 1998; Edgecombe et winged insects () and two orders of primitively al.2000 ; Giribet and Ribera 2000; Giribet et al.2001 ). wingless insects, (also called Microcor- ‘‘In spite of their great morphological differences, yphia) and Zygentoma.Zygentoma is the putative sister Protura and Collembola have been put together by group of the pterygote insects; these two together many authors in a particular clade, the so-called forming the clade Dicondylia, with Archaeognatha as ‘Ellipura’ (=Parainsecta)’’ (Bitsch and Bitsch 1998, p. its sister group.Non-insect hexapods (the so-called 356).In fact, most authors have recognized this group ) comprise the orders Protura, Collembola, based on morphology (Hennig 1953, 1981; Kristensen and Diplura.Relationships among the entognathous 1975, 1981, 1995, 1998; Boudreaux 1979a; Kukalova´ - hexapods, however, are not agreed upon (see reviews in Peck 1987, 1991; Stys and Bilinski 1990; Stys et al.1993 ; Stys and Zrzavy 1994; Bitsch and Bitsch 2000). Kraus and Kraus 1994; Stys and Zrzavy 1994; Koch Among basal hexapod relationships, four issues 1997; Kraus 1998, 2001; Ax 1999; Carpenter and remain problematic: (1) the monophyly or paraphyly Wheeler 1999; Edgecombe et al.2000 ; Wheeler et al. of the entognathous forms; (2) the monophyly of the so- 2001).Morphologically, Ellipura finds its most compel- called Ellipura or Parainsecta (Protura+Collembola); ling support in a distinctive style of entognathy (3) the monophyly of the Diplura and the relationships involving a linea ventralis on the underside of the head among the dipluran families; and (4) the monophyly and capsule (Koch 1997).Other characters cited as ellipuran relationships among the zygentoman families, especially apomorphies (e.g., loss of cerci or terminal filaments: with regard to the Lepidotrichidae,1 a taxon based on Kraus 1998; reduction of antennae, compound and the Baltic amber Lepidotrix1 pilifera Menge and tracheae; unpaired pretarsal claws: Ax 1999) are less represented in the extant fauna by the single species obviously straightforward in their interpretation, and Tricholepidion gertschi Wygodzinsky, 1961.These issues Bitsch and Bitsch (1998, 2000) did not find unambig- have recently been investigated by Bitsch and Bitsch uous support for Ellipura in parsimony analyses of (1998, 2000), who used a set of detailed and explicit internal anatomical and external morphological char- morphological character matrices in a parsimony frame- acters. work. Carapelli et al.(2000) published the first well- The monophyly of Diplura has also been disputed sampled molecular analysis of the ‘apterygotes’ using (for a review of alternative hypotheses see Stys and sequence data of the nuclear encoding gene elongation Zrzavy 1994).The traditional union of Campodeoidea factor-1a and the mitochondrial ribosomal 12S rRNA and Japygoidea as a clade, Diplura, has recently been (see also Zhang et al.2001 ), though neither the families defended on morphological (Koch 1997; Kristensen Lepidotrichidae nor were included in the 1998), developmental (Ikeda and Machida 1998), and analyses.To a lesser extent, Wheeler et al.(2001) molecular grounds (Carapelli et al.2000 ; Giribet and explored basal hexapod relationships by a combined Ribera 2000; Giribet and Wheeler 2001; D’Haese 2002b; analysis of morphological and molecular (18S and 28S Luan et al.2003 ).The alternative resolution of Diplura rRNA) data in their study of the hexapod orders, testing as a grade involves Campodeoidea as being more closely related to Ellipura than to Japygoidea (Stys and Bilinski 1The family-group name was first published as ‘‘Lepidothricinae’’ by 1990; Stys et al.1993 ), based on ovary structure. Silvestri (1912), based on the spelled ‘‘Lepidothrix’’. Carpenter The monophyly of the Zygentoma (families Lepido- (1992) indicated that the latter emendation of Lepidotrix Menge was trichidae, Nicoletiidae, and Lepismati- unjustified, and the valid family name becomes Lepidotrichidae under dae [ is given familial status by certain the International Code of Zoological Nomenclature, Article 29.3 (ICZN 1999). Lepidotrix, based on L. pilifera Menge, 1854, is the authors, while others include it within the Nicoletiidae]) senior synonym of Lepidion Menge, 1854, Klebsia Olfers, 1907, and is also debated.The sole extant representative of Micropa Olfers, 1907, also from Baltic amber. the Lepidotrichidae, Tricholepidion gertschi, has some ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 321 putative primitive characters not found in other , the Atelocerata (Kraus 1998, 2001)and zygentomans (including large abdominal sterna with Tetraconata (Dohle 2001; Richter 2002) hypotheses, posteriorly attached coxopodites, a large number of respectively.In addition to Lithobiomorpha and Sym- pregenital styles and eversible sacs; Kristensen 1991). phyla, the myriapod outgroups of Bitsch and Bitsch Tricholepidion also has retained the cephalic, ligamen- (1998, 2000), we add another chilopod terminal, tous endoskeleton (Boudreaux 1979a; Kristensen 1998; Scutigerina, so that both major of Chilopoda Staniczek 2000), and for these reasons Kristensen (1991, (Notostigmophora and Pleurostigmophora) are coded. p.130) considered the possibility that Tricholepidion is are sampled using the cephalocarid Hutch- the sister group of all other Dicondylia and should be insoniella, the anostracan branchiopod Artemia, and the given ordinal rank.A detailed consideration of the reptant malacostracan Homarus, which, taken together, mandible and its musculature endorsed the view that span much of the phylogenetic scope of Crustacea. Tricholepidion is basal to all other Dicondylia (Staniczek In the morphological analysis, a single coding is used 2000).This followed Kristensen’s (1998) reassessment of for Japygoidea (sensu Page´ s 1997), represented in the the position of Tricholepidion, which concluded that analysis by and Parajapygidae.Similarly, Zygentoma (including Tricholepidion) is monophyletic morphological codings for the proturan group Acer- based on (1) the presence of a widened apical segment of entomoidea and collembolan groups Symphypleona, the labial palp; (2) obliteration of the superlingua; and Poduromorpha and Entomobryomorpha follow those (3) sperm conjugation (Wygodzinsky 1961; Wingstrand of Bitsch and Bitsch (1998, 2000). 1973; Jamieson 1987; Jamieson et al.1999 ).However, the two numerical parsimony analyses where the Morphological characters monophyly of Zygentoma has been tested placed Tricholepidion as the sister group of the remaining One hundred and eighty-nine morphological charac- Dicondylia (Bitsch and Bitsch 2000; Beutel and Gorb ters have been extracted from literature sources, mainly 2001).Recent work has contributed characters of sperm from studies of basal hexapods and hexapod phylogeny ultrastructure for Tricholepidion (Dallai et al.2001a, b ). (Kristensen 1981, 1991, 1995, 1998; Koch 1997, 2000; In this study, we explore the relationships of basal Bitsch and Bitsch 1998, 2000; Kraus 1998; Machida and hexapods by performing a simultaneous analysis com- Ando 1998; Gereben-Krenn and Pass 1999, 2000; Pass bining 189 morphological characters and sequence data 2000; Staniczek 2000; Beutel and Gorb 2001; Wheeler et for five molecular markers, totalling about 3.5 Kb of al.2001 ).The matrices published by Bitsch and Bitsch DNA sequence information.The molecular markers (1998, 2000) were combined with that published by investigated are two nuclear ribosomal genes (18S Wheeler et al.(2001) .Some characters were also scored rRNA and the D3 region of the 28S rRNA), a nuclear differently according to studies of particular character coding gene (histone H3), a mitochondrial ribosomal systems cited above.Appendix A presents the character gene (16S rRNA), and a mitochondrial coding gene list and Appendix B the matrix. (cytochrome c oxidase subunit I [COI hereafter]). We have included representatives of many families of the basal hexapods, among others the zygentomans Molecular data , Nicoletiidae, and Lepidotrichidae (see Table 1), and several new dipluran sequences.Among Genomic DNA samples were obtained from fresh or various other goals this study aims to test one of the ethanol-preserved tissues following standard methods most intriguing issues in insect , whether the for DNA purification.The 18S rRNA loci were PCR- Zygentoma (silverfish) constitute a natural group, amplified in two or three overlapping fragments of including the three aforementioned families.To date, about 950, 900 and 850 bp each, using primer pairs this has not been tested with molecular data. 1F-5R, 3F-18Sbi and 5F-9R, respectively.All other markers were amplified and sequenced using a single primer pair, namely 28Sa and 28Sb for 28S rRNA, 16Sar and 16Sb for 16S rRNA, LCO1490 and HCO2198 Materials and methods for COI, and H3aF/H3bF and H3aR/H3bR for histone H3 (Xiong and Kocher 1991; Folmer et al.1994 ; Terminal taxa Whiting et al.1997 ; Colgan et al.1998 ; Edgecombe et al.2002 ). Members of the other major taxa of mandibulate Amplification was carried out in a 50 ml volume , and Crustacea, are used as reaction, with 1.25 units of AmpliTaqs DNA Poly- outgroups for rooting Hexapoda.Inclusion of myriapod merase (Perkin Elmer, Foster City, CA, USA), 200 mM as well as crustacean outgroups accommodates each of of dNTPs, and 1 mM of each primer.The PCR program two competing hypotheses for the sister group of consisted of an initial denaturing step at 94 1C for 60 s, ARTICLE IN PRESS 322 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

Table 1. Terminal taxa and molecular represented in the analyses

Terminal taxa 18S 28S COI 16S H3

CHILOPODA Lithobius obscurus/forficatus AF334271 AF334292 AF309492* AJ270997* AF11O853 Scutigerina weberi AY288689 AY288705 AY288741 AF370867 AY428835 Hanseniella sp.AF173237 AF173268 AF370839 AF370864 AF110856 Scutigerella sp.AF007106 AY555527 Hutchinsoniella macracantha AF370801 AF370811 AF370852 AF370875 AF110867 Artemia salina/franciscana X01723* X01723* NC_001620* X69067* AF110871 Homarus americanus AF235971* AF370812 AF370853 AF370876 AF370819 COLLEMBOLA Entomobryomorpha Orchesella villosa AY555514 AY555528 AY555540 AY555550 AY555560 Folsomia candida AY555515 AY555529 AY555541 AY555551 AY555561 Tomocerus minor AY555516 AY555530 AY555562 Poduromorpha Xenylla grisea AY555517 AY555531 AY555552 AY555563 Onychiurus ambulans AY555518 AY555532 AY555542 AY555564 Tetrodontophora bielanensis AY555519 AY555533 AY555543 Neanura muscorum AY555520 AY555534 AY555544 AY555553 Morulina verrucosa AY555521 AY555535 AY555554 AY555565 Symphypleona Sminthurinus bimaculatus AY555522 AY555536 AY555545 AY555555 AY555566 PROTURA traeghardi AF173233 AF005469 Protentomidae Neocondeellum dolichotarsum AY037170* AF416873* Berberentomidae tienmushanensis AY037169* AF416872* DIPLURA tillyardi AF173234 AF370844 AF370868 AF110860 Campodeidae sp.AF005455 AF005471 Lepidocampa weberi AY037167* AF416870* Japygidae sp.AF005456 Metajapyx sp.AY555523 AF173266 Heterojapyx sp.AY555524 AY555537 AF370845 AF370869 AY555567 Parajapygidae emeryanus AY037168* AF416871* ARCHAEOGNATHA Dilta littoralis AF005457 AF005473 AF370847 AF370871 Petrobius brevistylis/Petrobiinae sp.X89808* X90665* AF110865 Meinertellidae Machiloides sp.AY084061 AY084065 AF370846 Allomachilis froggatti AF370788 AF370806 AY084068 AF370870 AF110864 ZYGENTOMA Lepidotricidae Tricholepidion gertschi AF370789 AF370807 AY555556 AF110863 Lepismatidae Lepisma sp.AF005458 AF005474 AY555546 AY555557 AY555568 Thermobia domestica AF370790 AF370808 AF370872 AF370848 Nicoletiidae Texoreddellia texensis AY084062 AY084066 Squamigera latebricola AY084063 AY084067 AY084070 AY084073 AY084075 EPHEMEROPTERA Callibaetis ferrugineus AF370791 AF370849 AF370873 AF370815 Choroterpes sp.AY555525 AY555538 AY555547 AY555558 AY555569 Anax junius AY555526 AY555548 AY555559 AY555570 Libellula pulchella U65109 U65168 AF195753* AF037180* DERMAPTERA Forficula auricularia X89490* AF157313* Labidura riparia U65114 AY555539 AY555549 AF290383* AY555571 Locusta migratoria AF370793 AF370809 X80245* X80245* AF370817

Abbreviations: 18S=18S rRNA; 28S=28S rRNA, D3 region; COI=cytochrome c oxidase subunit I; 16S=16S rRNA; H3=histone H3.Asterisks denote sequences obtained from GenBank

35 amplification cycles (94 1C for 15 s, 49 1C for 15 s, PCR amplified samples were purified with the 72 1C for 15 s), and a final step at 72 1C for 6 min in a GENECLEANs III kit (BIO 101 Inc., Vista, CA, GeneAmps PCR System 9700 (Perkin Elmer).The USA) or with the AGTCs Gel Filtration Cartridges annealing temperature to amplify the COI fragment was (Edge BioSystems, Gaithersburg, MD, USA), and 46 1C. directly sequenced using an automated ABI Prisms ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 323

377 DNA sequencer or an ABI Prisms 3700 DNA been sequenced for 26 species.This fragment has been analyzer.Cycle-sequencing with AmpliTaq s DNA analyzed as a single piece due to the fact that it is a polymerase, FS (Perkin-Elmer) using dye-labeled coding fragment that does not present sequence length terminators (ABI PRISMTM BigDyeTM Terminator variation. Cycle Sequencing Ready Reaction Kit, Foster City, Histone H3: A 327 bp fragment of the nuclear protein CA, USA) was performed in a GeneAmps PCR System coding gene has been sequenced for 25 species.This 9700 (Perkin Elmer).The sequencing reaction was fragment has been analyzed in a single piece. carried out in a 10 ml volume reaction: 4 ml of Termi- In total, we have included ca.3500 bp of sequence nator Ready Reaction Mix, 10–30 ng/ml of PCR data per complete taxon, although missing gene frag- product, 5 pmoles of primer and dH2Oto10ml.The ments are found for some of the analyzed terminal taxa. cycle-sequencing program consisted of an initial step at In a few cases where sequences were not available for 94 1C for 3 min, 25 sequencing cycles (94 1C for 10 s, single species we have combined partitions from 50 1C for 5 s, 60 1C for 4 min), and a rapid thermal ramp different taxa and use supraspecific taxa as summary to 4 1C and hold.The BigDye-labeled PCR products terminals (see Table 1).The terminal taxon ‘‘Campo- were isopropanol-precipitated following manufacturer deidae sp.’’ is not a composite taxon, but an unidentified protocol, or cleaned with AGTCs Gel Filtration species of campodeid from Spain. Cartridges (Edge BioSystems).Chromatograms ob- tained from the automated sequencer were read and contigs made using the sequence editing software Analytical methods SequencherTM 3.0 (Gene Codes Corporation). Complete sequences were edited in GDE (Smith et al.1994 ), where Morphological data (Appendices A and B) were they were split according to primer delimited regions analyzed using the parsimony programs NONA version and secondary structure features.All external primers 2.0 (Goloboff 1998) and Winclada version 1.00.08 were excluded from the analyses.All the new sequences (Nixon 2002).The search strategy used tbr (tree have been deposited in GenBank (see accession codes bisection and reconnection) branch swapping on a series in Table 1). of 1000 random addition replicates retaining up to 10 Molecular data have been obtained for 42 terminals per replicate (commands: h/10; multÃ1000). (Table 1).The five molecular loci are as follows: Since all the replicates found cladograms of minimum 18S rRNA: The complete sequence of the small length, no further search strategies were deemed nuclear ribosomal subunit has proven to be useful in necessary.Jackknife values were calculated using an previous studies of arthropod and hexapod relation- approximate search with ten random addition replicates, ships, and has been chosen as the ‘skeleton’ of the and this procedure was repeated 1000 times.The .This locus has been sampled for 42 speci- jackknife deletion function that was employed assigns mens, of a total length (excluding primers 1F and 9R) each character a probability of e1 of being deleted ranging from 1324 bp in the symphylan Scutigerella sp. (Farris et al.1996 ; Farris 1997). to over 2330 bp in Heterojapyx sp.The 18S rRNA Molecular data were analyzed using the direct sequences have been divided into 27 fragments, accord- optimization method (Wheeler 1996) as implemented ing to primer regions and secondary structure features in the computer program POY (Wheeler et al.2002 ). (Giribet 2001).Two of these regions showed large Each gene was analyzed independently and in combina- sequence length heterogeneity and have been excluded tion with (1) all other molecular data, and (2) all from the analyses. available data (molecular and morphological).A para- 28S rRNA: The D3 fragment of the large nuclear meter space of two variables (gap/transversion ratio and ribosomal subunit also has been used in previous transversion/transition ratio) was explored, totalling analyses of arthropod and hexapod phylogeny.Here, twelve parameter sets analyzed per partition, and for we use sequences for 37 specimens, of a total length each of the combined analyses (molecular and total (excluding primers 28Sa and 28Sb) ranging between 293 evidence).Therefore 96 independent analyses were and 520 bp.The fragment has been divided into four performed. pieces, one of which has been excluded from the analyses The POY analyses were run in parallel on a cluster of due to large sequence length heterogeneity. 128 dual-processor nodes using PVM software and the 16S rRNA: A fragment of the mitochondrial riboso- parallel version of POY (commands in effect: ‘‘–parallel– mal large subunit ranging between 475 and 540 bp has jobspernode 2–dpm–dpmacceptratio 1.5–dpmjobsper- been sequenced for 27 specimens.The gene fragment has node 1’’), and the cluster was subdivided into 10 been divided into 11 fragments, all of them included in subclusters (command: ‘‘-controllers 10’’).Each repli- the analyses. cate consisted of 25 starting Wagner trees generated COI: A fragment of 658 bp of the mitochondrial through random addition sequence, the best of which is protein coding gene cytochrome c oxidase subunit I has submitted to a combination of SPR and TBR branch ARTICLE IN PRESS 324 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

Table 2. Tree lengths for different partitions (RIB to MOR) at different parameter set combinations (110–441), and values of the ILD metric (see Materials and methods) for all the molecular partitions (ILD-MOL) and for the combined molecular and morphological analyses (ILD-TOT)


110 1179 1052 1424 373 4181 374 4621 0.0366 0.0474 111 2760 2105 2398 852 8343 374 8770 0.0273 0.0320 121 4010 3210 3947 1261 12,741 748 13,585 0.0246 0.0301 141 6401 5334 6829 2031 21,154 1496 22,877 0.0264 0.0344 210 1465 1052 1755 373 4848 748 5721 0.0419 0.0573 211 3083 2105 2821 852 9111 748 9945 0.0274 0.0338 221 4612 3209 4680 1261 14,162 1496 15,849 0.0282 0.0373 241 7615 5335 8254 2031 23,965 2992 27,383 0.0305 0.0422 410 1940 1052 2202 373 5948 1496 7685 0.0641 0.0809 411 3630 2105 3354 852 10,295 1496 11,955 0.0344 0.0433 421 5672 3210 5662 1261 16,484 2992 19,827 0.0412 0.0519 441 9702 5334 10145 2031 28,567 5984 35,285 0.0474 0.0592

Abbreviations: RIB=18S rRNA+28S rRNA; COI=cytochrome c oxidase subunit I; 16S=16S rRNA; H3=histone H3; MOL=molecular [18S+28S+16S+COI+H3]; MOR=morphology; TOT=molecular and morphology partitions combined.Values for the parameter set (121) that minimizes incongruence appear in italics. swapping (the default in POY), for a total of 20 Results replicates.TBR branch swapping was followed by a combination of tree-fusing (Goloboff 1999) and ratch- The morphological analysis yielded seven trees of 374 etting (Nixon 1999) to optimize tree searches.The steps (CI 0.73, RI 0.93), the same trees being obtained in ‘‘–slop’’ and ‘‘–checkslop’’ commands were employed to every single replicate performed.The strict consensus of improve cladogram cost calculations from the heuristic these cladograms (Fig.1 ) shows monophyly of Hex- operations (Wheeler 2002).Each search was performed apoda, Ectognatha, Dicondylia, Pterygota, and mono- for each partition independently, as well as for the phyly of all the orders represented by more than one combined analysis of all data.Jackknife values were terminal, including the monophyly of the orders Diplura calculated with POY using 1000 random addition and Zygentoma.‘Entognatha’ is not supported, with replicates submitted to spr (subtree pruning and Diplura resolved as sister group of Ectognatha, with a regrafting) and tbr branch swapping. jackknife frequency of 92%.Among the ‘apterygote’ Character congruence was used to choose the orders, Protura, Collembola, Diplura, and Archaeog- combined analysis that minimized incongruence among natha have jackknife support values of 99% or 100% partitions (as in Wheeler 1995).A more conservative (Fig.1 ).Zygentoma has a jackknife frequency of 52%, estimate of the phylogenetic hypothesis was also with Tricholepidion being the sister group of the other presented via the strict consensus of all the parameter two sampled families, Lepismatidae and Nicoletiidae. sets (Giribet 2003).Congruence among partitions These data do not support the previously proposed (morphological and molecular) was measured by the possibility of zygentoman paraphyly based solely on ILD metric (Mickevich and Farris 1981; Farris et al. morphology.The data set is ambiguous with respect to 1995)(Table 2).This value is calculated from the the position of Collembola and Protura.In one minimal difference between the overall cladogram length and the length topology, Ellipura is monophyletic, but an Psum of its data components: ILD ¼ðLengthCombined alternative, equal-length resolution places Protura as LengthIndividual SetsÞ=LengthCombined: Character con- the sister group to Diplura+Ectognatha (Fig.1 ). gruence is thus used as an optimality criterion to Although numerous characters optimize as basal apo- discriminate between cladograms, the optimal clado- morphies of Hexapoda (Fig.1 ), the jackknife frequency gram being that which minimizes conflict among all the for hexapods is low (61%). data.Criticisms of the ILD test as a measure of data set The molecular data (Fig.2 ) reject hexapod mono- independence for combinability issues (Dolphin et al. phyly.If the trees are rooted with the Chilopoda, for the 2000) are not relevant to our use of the metrics, since we parameter set that minimizes overall incongruence do not use it as a randomization test.Our usage of the between partitions (121; gap/transversion ratio=1; metric registers comparative levels of congruence among transversion/transition ratio=2), hexapods are poly- partitions when analyzed under different analytical phyletic.Protura+Diplura forms the sister taxon parameters. to Symphyla, the crustaceans form a clade with ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 325

131 163 Hutchinsoniella 7 14 131 9 33 189 Artemia 6 10 145 149 Homarus 7 89 148 151 10 4 48 89 137157169 175 181 Scutigerina 20 68 93 138160170178 Lithobius 100 24 31 48 98 123 157169 Scutigerella Collembola 25 33 74 121132 160 175 Hanseniella 96 Protura 9 34 54 56 87 142 149 155 158 Baculentulus 28 41 55 60 89 143 154 157 Acerentulus Diplura + Ectognatha 100 Neocondeellum PROTURA 17 Sminthurinus 118 Folsomia Collembola 1 9 33 74 114145158164 Orchesella 63 18 7 14 51 86 116155159 Tomocerus Protura 100 12 Onychiurus 117 94 96 60 Tetrodontophora Diplura + Ectognatha 95 115 128 Xenylla 5 24 32 86 121169 117 93 28122 Neanura 8 25 44 91 164179 60 COLLEMBOLA 61 82 Morulina 31 164 Campodeidae 157 Campodea 23 26 33 101 89 Lepidocampa 25 29 91 182 Metajapyx 99 56 130 103 Heterojapyx 97 Catajapyx DIPLURA Parajapyx 13 98 129156169178 124 Machiloides 24 121147 160171 92 2 33 72 165 60 Allomachilis 30 35 105188 189 Dilta 99 63 Petrobius ARCHAEOGNATHA 93 7 11 17 45 93 133143157175 Tricholepidion 36 177 1 189 10 14 40 92 97 135153166180 Texoredellia 37 100 52 7 124 87 Squamigera 18 74 151 Lepisma 6 27 47 162 75 121 Thermobia ZYGENTOMA S.S. 20 42 150180 87 99 14 90 100127141172176 Callibaetis 31 93 119135143173185 Choroterpes 6 52 70 88 103123151165 100 15 63 120189 Anax 46 59 76 102 121139158 100 27 112184 38 71 144 Libellula 100 66 93 146 51 147 62 77 81 84 104 Locusta 69 80 113152 73 79 83 85 7 65 75 82 107109130143187 Forficula 95 17 70 78 99 108125140174 Labidura 100

Fig. 1. Strict consensus of seven most parsimonious cladograms based on morphological data in Appendix B.Numbers in italics are jackknife frequencies for clades present in more than 50% of jackknife replicates.Only unambiguous character optimizations are shown.Inset shows the two equally parsimonious resolutions of basal hexapod interrelationships.

Collembola, and the Ectognatha comprise the sister of hexapods under all analytical conditions, group to the latter.None of these nodes receives and recovers three main hexapod clades.One clade jackknife values above 50%.The data support mono- unites Protura+Diplura (jackknife of 62%), another phyly of Protura and Collembola under all analytical contains all the collembolan species (jackknife 100%), parameters explored and with 100% jackknife support and a third consists of the ectognathous hexapods each (Fig.2 ), but few higher-level clades are stable to (jackknife 70%).Resolution within Ectognatha is parameter variation.Relationships of ectognaths based (Archaeognatha (Tricholepidion (Zygentoma s.s.+Pter- solely on the molecular data are at odds with ygota))) under the optimal parameter set, but Trichole- morphology in not finding monophyly of either pidion and Zygentoma s.s. form a clade under most Pterygota or Dicondylia.Jackknife support for the other parameter sets (Fig.4 ).While Dicondylia receives orders Diplura, Archaeognatha and Zygentoma is low a jackknife support value of 66%, support for Dicon- (59% for Archaeognatha; o50% for the other orders), dylia to the exclusion of Tricholepidion is below 50%. while support is considerably higher for the pterygote Diplura appear monophyletic under all analytical orders Ephemeroptera (89%), Odonata (97%), and conditions (jackknife of 84%), and in all cases, Dermaptera (96%), although this could be an artefact Campodeidae appear nested within a paraphyletic of lesser sampling. Japygoidea, with a clade containing Parajapyx, Hetero- The combined analysis of all the molecular and and Campodeidae being found under all analy- morphological evidence (Figs.3 and 4 ) still shows tical conditions as well as in 100% jackknife replicates. ARTICLE IN PRESS 326 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

73 Lithobius 78 Lithobius Scutigerina Scutigerina 100 Hanseniella 100 Hanseniella Scutigerella Scutigerella 100 Neocondeellum 100 Neocondeellum Baculentulus Baculentulus Acerentulus 76 Acerentulus Metajapyx 62 Metajapyx Catajapyx Catajapyx 84 Parajapyx Parajapyx Heterojapyx Heterojapyx 100 100 Campodeidae Campodeidae 55 58 Campodea 71 Campodea 92 Lepidocampa Lepidocampa Homarus Homarus Hutchinsoniella Hutchinsoniella Artemia Artemia Sminthurinus Sminthurinus 100 Tomocerus Tomocerus 100 Folsomia Folsomia Orchesella Orchesella 52 68 Neanura 68 Neanura Morulina Morulina Xenylla Xenylla Tetrodontophora Onychiurus 97 Onychiurus 92 Tetrodontophora Petrobius 89 Choroterpes 84 Dilta Callibaetis Machiloides Labidura 98 Allomachilis 96 Forficula 70 Tricholepidion Locusta Lepisma Libellula Thermobia 97 Anax 66 Squamigera 100 Allomachilis 90 Texoreddellia 59 Machiloides Locusta Petrobius Forficula Dilta 100 Labidura Lepisma 58 94 Choroterpes Tricholepidion Callibaetis Thermobia Anax Texoreddellia 95 Libellula 92 Squamigera Fig. 3. Cladograms based on combined molecular data for five Fig. 2. Cladograms based on combined molecular data for five markers and morphological data in Appendix B.Cladogram at markers.Cladogram at left is single shortest cladogram for left is consensus of 4 shortest cladograms for parameter set parameter set 121, which minimizes incongruence between the 121, which minimizes incongruence between the six data six data partitions (five genes and morphology).Cladogram at partitions.Cladogram at right is strict consensus of all right is strict consensus of all 12 explored parameter sets. cladograms for 12 explored parameter sets.Jackknife frequen- Jackknife frequencies shown for clades present in more than cies shown for clades present in more than 50% of jackknife 50% of jackknife replicates.Hexapoda shown with bold replicates.Hexapoda shown with bold branches. branches.

While monophyly of Pterygota is stable to parameter Discussion variation, its jackknife support is low (58%) and its internal relationships are shown to be parameter- Hexapod monophyly dependant.In this analysis, when rooted with Chilopo- da, all analytical parameters find Crustacea, Collembola Monophyly of hexapods has been largely recognized and Ectognatha forming a monophyletic group, thus by morphologists (Hennig 1969; Kristensen 1991; Kraus rendering Hexapoda non-monophyletic, although jack- and Kraus 1994; Carpenter and Wheeler 1999; Bitsch knife support for this clade is below 50%. and Bitsch 2000; Edgecombe et al.2000 ; Koch 2000; ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 327

A Chilopoda Symphyla Protura "Japygoidea" Campodeidae Malacostraca Entomostraca Collembola Archaeognatha Tricholepidion Zygentoma s.s. Pterygota

Collembola + Ectognatha

Crustacea + Ectognatha

B Chilopoda Symphyla Protura "Japygoidea" Campodeidae Collembola Malacostraca Entomostraca Archaeognatha Tricholepidion Zygentoma s.s. Pterygota

1 2 4

Gap/change 1 2 4 8 transversion/transition Fig. 4. Summary cladograms showing most parsimonious topologies for combined analysis of molecular and morphological data for parameter set 121 (A) and immediately suboptimal parameter set 111 (B).Monophyly of clades in 12 explored parameter sets is indicated (black square=monophyly; gray square=monophyly in some of a set of equally parsimonious resolutions; white square=non-monophyly).Cladogram A shows groups in two equally parsimonious resolutions of Crustacea+Collembola+Ec- tognatha.

Beutel and Gorb 2001; Giribet et al.2001 ; Wheeler et al. et al.2003 ).In the present analyses, monophyly of 2001), although molecular biologists have had trouble Hexapoda is found only for morphological data in finding data to support this hypothesis (but see Mallatt isolation (Fig.1 ), because the molecular and combined et al.2004 ).Recent analyses with dense character and analyses nest crustaceans and symphylans within the taxon sampling including several lineages of ‘basal’ Hexapoda when chilopods are specified as outgroups. hexapods have suggested hexapod monophyly (Carpen- The non-monophyly of hexapods is certainly shock- ter and Wheeler 1999; Wheeler et al.2001 ), although ing from a morphological perspective.In addition to unusually autapomorphic sequences can yield patterns the unique thoracic tagmosis of hexapods (ch.64; incongruent with morphology (Giribet et al.2001 ; Nardi see Appendix A), other apomorphic characters of ARTICLE IN PRESS 328 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

Hexapoda (Fig.1 ) include the two corneagenous cells Monophyly of Ellipura, and to a lesser degree being primary pigment cells (ch.5), the labium (ch.24), Entognatha, are supported by most morphological and the lack of Distal-less expression in the mandible (ch. combined morphological–molecular analyses published 32), six-segmented locomotory limbs (chs.86, 91), and so far (Carpenter and Wheeler 1999; Edgecombe et al. provisional dorsal closure of the embryo (ch.179). 2000; Wheeler et al.2001 ), but none have previously Other characters optimized as hexapod apomorphies in employed multiple representatives of all the entog- Fig.1 are less straightforward in their interpretation, nathous orders.Relationships obtained here for the notably when they involve ‘losses’ of characters other- entognathous hexapods are mostly driven by the wise unique to crustaceans (median eyes fused to molecular partitions. naupliar eyes, ch.8) or myriapods (transverse bar fused The monophyly of Diplura has been contested by to the posterior process of the tentorium, ch.44).The some morphologists (Stys and Bilinski 1990; Stys et al. fulturae of hexapods appear to be unique, sharing a 1993), although more recent studies endorse the mono- common position in a groove between the arthrodial phyly of the group (Koch 1997; Kristensen 1998), as do membrane of the maxilla and the labium (Koch 2003). the data here presented (morphological, molecular and The tendency of molecular data to suggest hexapod combined analyses).Morphologically, dipluran mono- polyphyly should be taken with caution, because it often phyly is supported by the admentum in the head capsule relies on depauperate taxonomic sampling within the (ch.23), the interlocking of the superlinguae and galea basal hexapods or for the outgroups.Given diversity (ch.25), reduction of the mandibular condylus and and disparity of Crustacea, the number of crustacean ligament (ch.26), terminal mandibular teeth and a terminals included in an analysis may influence the shovel-like pars incisivus (ch.29), a rotating pivot joint status of Hexapoda.While we have made the effort of in the ‘knee’ of the locomotory limbs (ch.91), sampling the basal hexapod lineages intensely and have trochanteral femur-twisting muscles (ch.101), and employed sequence data for five loci, some of the ‘odd’ rotation of the labial Anlagen (ch.182).Monophyly of relationships are unstable to parameter variation and the Campodeidae is also obtained, although the receive low jackknife support. molecular data are not consistent with the monophyly of Japygoidea, and no data have been evaluated for the other dipluran groups, such as Procampodeidae, Ana- Entognathous hexapod relationships japygidae, and Projapygidae.Including these families into future analyses should aid in reconstructing the Among the unorthodox relationships well corrobo- phylogeny of the monophyletic Diplura. rated by our data is a relationship between Protura and Diplura (see also Carapelli et al.2000 ; Giribet and Ribera 2000; Giribet and Wheeler 2001; D’Haese 2002b; Ectognath relationships Luan et al.2003 ), and therefore a rejection of the Ellipura hypothesis.The clade composed of Protura and The relationships among the orders of true insects Diplura consistently falls outside of a clade uniting (Archaeognatha+Dicondylia) are well resolved and Crustacea with the Collembola and Ectognatha.While stable.Ectognatha, Dicondylia, and Pterygota are most analyses suggest Collembola nesting outside of the monophyletic under all analytical conditions for the Crustacea–Ectognatha clade (as also found by Nardi et combined data (Figs.3 and 4 ). Tricholepidion appears as al.2003 , and Negrisolo et al.2004 ), the alternative result sister group of Zygentoma s.s.+Pterygota in the most suggesting monophyly of Collembola+Ectognatha is congruent parameter set, but the jackknife support value found in some of the resolutions under the optimal of the node uniting Zygentoma (excluding Tricholepi- parameter set, as well as under two other analytical dion) and Pterygota shows a frequency below 50%.Ten parameters (Fig.4 ).A major difference between our of 12 explored parameter sets support the alternative analysis and that of Nardi et al.(2003) is the dense resolution of Tricholepidion as sister group to Zygen- sampling within the Collembola, but yet our analyses do toma (Fig.4 ).A sister group relationship between not permit unambiguous choice between the two Tricholepidion and Zygentoma+Pterygota was raised as hypotheses.Morphological support for a clade uniting a possibility (Kristensen 1981) based on the retention of Collembola and Ectognatha is restricted to the presence the intergnathal connective ligament in Tricholepidion. of ocelli (character 7), although this state is absent in The presence of this ligament in Tricholepidion but not Lepismatidae, Nicoletiidae and the fossil Lepidotrix. in Zygentoma was confirmed by Kristensen (1998) and Broader sampling that includes Crustacea calls the Staniczek (2000), who argued for its plesiomorphic polarity of this character into question, since many condition. crustaceans possess homologues of ocelli (the naupliar The relationships among the three pterygote lineages eyes), whereas the absence of median eyes in Myriapoda are unsettled due to limited taxon sampling.Although may be an autapomorphic loss in that group (Ax 1999). most parameter sets (including the most congruent ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 329 parameter set: Fig.3 ) support monophyly of the The most salient result of our analyses is a grouping of , others suggest Ephemeroptera as the most Protura+Diplura to the exclusion of Collembola.A basal pterygote .Most phylogenetic analyses of proturan/dipluran clade has never been considered by hexapod relationships have suggested paraphyly of the morphologists but it has molecular support and is stable paleopteran orders, with Odonata as the sister group to to parameter variation in the combined analysis of (Hennig 1953; Kristensen 1975; Whiting et al. morphological and molecular data (Fig.4 ).This result 1997; Carpenter and Wheeler 1999; Beutel and Gorb has been obtained in some molecular analyses employing 2001; Wheeler et al.2001 ), although others support the ribosomal sequence data (e.g., Giribet and Ribera 2000; monophyly of Palaeoptera (=Ephemeroptera+Odona- Giribet and Wheeler 2001; D’Haese 2002b), in Luan et al. ta) (Hennig 1969; Kukalova´ -Peck 1983, 1991, 1992, (2003) even with high bootstrap support values.How- 1998; Rasnitsyn 1998; Whiting 1998; Willmann 1998).A ever, no morphological character optimizes unambigu- sister group relationship between Ephemeroptera and ously at the base of this node under the topologies shown Neoptera has also been proposed based on the mode of in Fig.4 , and the group conflicts with a well-supported sperm transfer from gonopore to gonopore (Boudreaux morphological grouping of Diplura and Ectognatha (Fig. 1979a), and it is best supported by a recent combined 1).Finally, the position of Collembola, which has analysis of morphology and molecules (Ogden and received special attention in recent publications (Nardi Whiting 2003).We refer readers to the latter article for a et al.2003 ; Delsuc et al.2003 ) requires caution.Our more detailed discussion of the Palaeoptera controversy. results conflict in placing Collembola ambiguously with the Ectognatha, or outside a clade of Crustacea+Ectog- natha in our optimal tree (Fig.4A ), with most parameter sets favoring the latter hypothesis.The resolution of Concluding remarks Collembola outside a Crustacean–Ectognath clade has been found in other molecular analyses (Nardi et al. Relationships among apterygote hexapods have been 2003; Negrisolo et al.2004 ).These results will need long debated in the morphological arena, and the further testing using new data, especially of more addition of new sources of characters, in this case comprehensively sampled crustacean diversity and in- molecular, can contribute to resolution of some cluding a broader representation of ectognathous hex- conflicting issues.For example, the monophyly of the apods.At this point the question of hexapod monophyly Diplura has been a contentious issue based on morphol- and the relationships among the basal hexapod lineages ogy (Stys and Bilinski 1990; Stys and Zrzavy 1994; Koch may require an even more expanded analysis covering a 1997), while molecular data generally support its much larger diversity within the other mandibulate monophyly (Carapelli et al.2000 ; Giribet and Ribera groups.Adding information from the complete large 2000; Wheeler et al.2001 ; Luan et al.2003 ).Other ribosomal subunit (Mallatt et al.2004 ), and from more issues, such as the status of Ellipura and Entognatha conserved loci, especially myosin heavy chain II (Ruiz- have received wide attention, both from morphologists Trillo et al.2002 ) and other protein-coding genes, may and molecular systematists.However, the position of the prove useful to resolve these questions. enigmatic Tricholepidion has only received dedicated attention from a morphological standpoint (Boudreaux 1979a, b; Kristensen 1998; Bitsch and Bitsch 2000; Acknowledgements Beutel and Gorb 2001).Although some molecular-based analyses have employed Tricholepidion as a terminal We thank Gerry Cassis, Juli Pujade, James Reddell, taxon (Edgecombe et al.2000 ; Giribet et al.2001 ; Nardi and Jan Zrzavy for providing specimens, and Luis et al.2003 ), the scope of those studies was higher Espinasa for sharing unpublished sequences of Squami- arthropod relationships, and sampling within hexapods gera latebricola.Rolf Beutel provided comments on a was far from optimal for attempting to resolve the previous version of this article, which helped consider- position of this enigmatic species.However, the position ably to improve it.Gerhard Haszprunar and two of Tricholepidion remains in conflict after this study anonymous reviewers are also acknowledged for their because none of the sets of data show substantial comments.This work was supported in part by a grant support for either of the two competing hypotheses from the NASA Fundamental Biology program (Award (monophyly or paraphyly of Zygentoma).What seems NCC2-1169) to WCW and GG. clear, though, is that a sister group relationship of Tricholepidion to Nicoletiidae, as suggested by Wygod- zinsky (1961), is not supported by morphology or Appendix A molecules.Addition of the family Maindroniidae to our study might prove important to settle the issues Characters coded in the morphological data matrix. concerning the position of Tricholepidion. Characters 6, 25, 27, 42, 91 and 180 are additive. ARTICLE IN PRESS 330 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

1.Compound ( Mu¨ ller et al.2003 ): (0) 20.Clypeofrontal sulcus ( Bitsch and Bitsch 2000: ch. Developed; (1) Dispersed (including myriapod 5): (0) Absent; (1) Present. stemmata); (2) Absent. 21.Entognathy: (0) Mouthparts not retracted into 2.Compound eye medial margins ( Kraus 1998: ch. pocket in head capsule; (1) Hypertrophy of pleural 29): (0) Not medially contiguous; (1) Medially folds, maxillae and mandibles in separate gnathal contiguous. pouches; (2) Pleural folds almost fused ventrally, 3.Compound eye stalked, basally articulated: maxillae and mandibles in single gnathal pouch. (0) Eye sessile; (1) Eye stalked. 22.Linea ventralis ( Koch 1997; Kraus 1998: ch.18): 4.Number of retinular cells ( Paulus 1979): (0) Many; (0) Absent; (1) Present. (1) Eight. 23.Admentum differentiated ventrally between 5.Primary pigment cells ( Paulus 1979): (0) prementum and oral fold on each side of head Corneagenous cells not primary pigment cells; (1) capsule (Koch 1997), developing from posterior Corneagenous cells are two primary pigment cells. part of mouth fold (Ikeda and Machida 1998): 6.Chiasmata in optic lobe ( Strausfeld 1998): (0) No (0) Absent; (1) Present. chiasmata (Scutigera: Strausfeld in Klass and 24.Labium (second maxilla bordering mouth: Kraus Kristensen 2001); (1) Chiasma between lamina and Kraus 1994): (0) Second maxillae separate; ganglionaris and medulla; (2) Two chiasmata, (1) Fused; (2) Basally obliterated. between lamina ganglionaris and medulla/between 25.Superlinguae: (0) Absent; (1) Present; (2) medulla and lobula. Interlocking with galea (Koch 1997; Kristensen 7.Ocelli ( Bitsch and Bitsch 2000: ch.8): (0) Present 1998). (median eyes, including naupliar eyes); (1) Absent. 26.Mandibular condylus and connection with head 8.Median eyes fused to naupliar eyes ( Lauterbach (Koch 1997): (0) Basic condylus and ligament 1983): (0) Absent; (1) Present. connecting base of mandibles with lateral wall of 9.Antennal segmentation: (0) Multisegmented; head capsule; (1) Basic condylus and mandibular (1) Reduced to a few segments; (2) Unjointed; ligament reduced. (3) absent. 27.Mandibular articulation ( Fu¨ rst von Lieven 2000; 10.Antennal musculation: (0) Antennal articles Staniczek 2000): (0) Monocondylic; (1) individually musculated; (1) Annulated antenna Dicondylic; (2) Ball-and-socket articulation lacking independently musculated articles. between clypeal condyle and mandibular ridges. 11.Johnston’s organ in antennal pedicel: (0) Absent; 28.Mandibular form ( Kristensen 1981): (0) Broad; (1) Present. (1) Stylettiform. 12.Sensory organ of third antennal segment 29.Mandibular teeth ( Koch 2001): (0) Lateral; (D’Haese 2003: ch.10): (0) Without papillae; (1) Terminal, forming shovel-like pars incisivus. (1) Hidden by well-developed papillae. 30.Mandible with large, stalked molar process and 13.Postantennal organs ( Bitsch and Bitsch 1998:ch.5): tapering incisor process (Koch 2001): (0) Absent; (0) Present (Bellonci’s organ possibly homologous: (1) Present. Klass and Kristensen 2001); (1) Absent. 31.Mandibular prostheca ( Bitsch and Bitsch 2000: 14.Antennal vessels ( Pass 1991; Bitsch and Bitsch ch.14): (0) Absent; (1) Present (lacinia mobilis not 1998: ch.18): (0) Pair connected to aorta; (1) Pair homologous: Richter et al.2002 ). separate from aorta; (2) Absent. 32. Distal-less expression in mandible (Scholtz et al. 15.Antennal ampullae indirectly compressed by 1998): (0) Transient expression at least; (1) No pharynx movements (Pass 2000): (0) Absent; expression at any stage. (1) Present. 33.Maxillary palpi: (0) Smaller than thoracic leg 16.Antennal pulsatile organs ( Pass 2000): (0) Absent; (Crustacea: maxillary endopodal palp smaller (1) Pulsatile organ with fronto-pharyngeal than thoracic endopods); (1) Enlarged; compressor; (2) Pulsatile organ with ampullo- (2) Reduced or vestigial; (3) Absent. pharyngeal, ampullo-ampullary and ampullo- 34.Lacinia ( Kristensen 1981): (0) Broad; (1) Slender aortic dilators. rod. 17.Head orientation ( Bitsch and Bitsch 2000: ch.3): 35.Labial (second maxillary) endites: (0) Single lobe; (0) Hypognathous; (1) Prognathous; (2) Mouth (1) Bilobed (Kristensen 1998: ch.40); (2) Several directed backwards. lobate endites on second maxillary protopod. 18.Scales: (0) Absent; (1) Present; (2) Absent on 36.Apical segment of labial (second maxillary) palp antennae. (Kristensen 1998: ch.60): (0) Narrow; (1) 19.Frontal line ( Bitsch and Bitsch 2000: ch.4): Widened. (0) Inverted, Y-shaped line; (1) Reduced to 37.Labial (second maxillary) palp ( Bitsch and Bitsch coronal ; (2) Weak to absent. 2000: ch.18): (0) 3 segments; (1) 4 segments; ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 331

(2) Short, 1-segmented, or replaced by row of 56.Tritocerebral commissures ( Bitsch and Bitsch short setae; (3) Setigerous plate; (4) Absent; (5) 5 1998: ch.3): (0) One or two free commissures; segments; (6) Endopod of 6 segments and terminal (1) Commissure in subesophageal ganglion. spine; (7) Endopodal palp with 2 segments. 57.Epipharyngeal ganglia ( Franc¸ ois 1969; Kristensen 38.Larval labium (second maxilla): (0) Not 1991): (0) Small; (1) Enlarged. prehensile; (1) Prehensile. 58.Pseudocommissure of stomatogastric nervous 39.Opening of ectodermally derived salivary glands system: (0) Without entognathous position; (Bitsch and Bitsch 1998: ch.8): (0) Pair, at base of (1) With entognathous position. second maxillae; (1) Unpaired, median. 59.Circumesophageal ring ( Gereben-Krenn and Pass 40.Position of median salivary gland opening ( Bitsch 1999): (0) Present; (1) Absent. and Bitsch 1998: ch.8): (0) Midventral groove of 60.Cephalic excretory organs ( Bitsch and Bitsch labium; (1) Salivarium. 1998: ch.13): (0) One or two pairs of complete 41.Anterior tentorium: (0) Absent (Diplura coded nephridial organs; (1) Pair of labial kidneys; following Bitsch and Bitsch 2002); (1) Ectodermal (2) Absent. invaginations (Folsom’s arms homologous: Bitsch 61.Postoccipital ridge ( Kristensen 1975; Staniczek and Bitsch 2002); (2) Fulcro-tentorium. 2000): (0) Absent; (1) Lateral; (2) Continuous. 42.Anterior tentorial apodemes ( Koch 2000): (0) 62.Two cervical sclerites ( Kristensen 1981): Separate rod-like apodemes; (1) Anterior part of (0) Absent; (1) Present. tentorial apodemes forms arched, hollow plates 63.Lateral cervical sclerite in three pieces: (0) Absent; that approach each other mesially but remain (1) Present. separate; (2) Anterior tentorium an unpaired roof. 64.Position of ambulatory legs: (0) Postcephalic 43.Posterior suspension of anterior apodemes to segments 1–3; (1) Postcephalic segments 2–16; cranial wall (Koch 2000): (0) Absent; (1) Present. (2) Postcephalic segments 1–12; (3) Postcephalic 44.Posterior process of tentorium fused anteriorly segments 5–8 (second to fifth pereiopods). with hypopharyngeal bar and transverse bar 65.Discoid pronotum ( Kristensen 1981): (0) Absent; (Bitsch and Bitsch 2002; Koch 2003): (0) (1) Present. Transverse bar absent; (1) Transverse bar present. 66.Pronotum overlapping propleuron: (0) Absent; 45.Posterior tentorial apodemes ( Bitsch and Bitsch (1) Present. 2002): (0) Absent; (1) Present as metatentorium. 67. tergum ( D’Haese 2003: ch.71): (0) 46.Corporotentorium: (0) Absent; (1) Present. Developed; (1) Reduced, without setae. 47.Fulturae or hypopharyngeal suspensorium ( Bitsch 68.Trunk heterotergy ( Ax 1999): (0) Absent; (1) and Bitsch 2000: ch.19): (0) Present; (1) Absent. Present (long tergites on pedigerous segments 1, 3, 48.Anterior dorsal muscle forming gnathal lobe 5, 7, 8, 10, 12 and 14). flexor (Kluge 1999; Koch 2001): (0) Dorsal 69.Musculus scutello-postnotalis III ( Beutel and remotor forms cranial adductor; (1) Dorsal Gorb 2001: ch.59): (0) Present; (1) Absent. promotor (anterior dorsal muscle) forms gnathal 70.Pleural sutures ( Boudreaux 1979a): (0) Absent; lobe flexor. (1) Not slanting forward; (2) Slanting forward. 49.Origin of ventral tentorial adductors ( Staniczek 71.Pteropleura tilted backward, notum small: (0) No; 2000): (0) On intergnathal connective lamina; (1) (1) Yes. On anterior tentorial arm (intergnathal connective 72.Trochantin ( Kristensen 1981): (0) Absent; lamina absent). (1) Present; (2) Trochantin episternal sulcus; 50.Mandibulo-hypopharyngeal muscle ( Staniczek (3) Absent in meso- and . 2000): (0) Absent; (1) Present. 73.Separate coxopleuron ( Kristensen 1975): (0) Yes; 51.Tentorio-mandibular muscles ( Kristensen 1975; (1) No. Beutel and Gorb 2001: ch.29): (0) Several 74.Sternal part of the trunk () ( Bitsch and bundles; (1) One thin bundle or absent. Bitsch 2000: ch.23): (0) Each segment includes a 52.Transverse stipital muscle ( Kristensen 1981): large sternum; (1) Sternal area divided into 2 (0) Present; (1) Absent. hemisternites; (2) Mostly membranous, showing 53.Tentorio-lacinial muscle ( Kristensen 1975): only a pair of small sclerites; (3) Y-shaped ridge (0) Present; (1) Absent. on sternal plates; (4) Sternites extended rearward 54.Protocerebrum ( Bitsch and Bitsch 1998: ch.1): to form substernal laminae. (0) Two hemispheres; (1) Two dorsal lobes and 75.Mesothoracic basisternal fold ( Kristensen 1975): two posterior lobes. (0) Absent; (1) Present. 55.Deutocerebrum ( Bitsch and Bitsch 1998: ch.2): 76.Two pairs of wings: (0) Absent; (1) Present. (0) Well-developed lobes, receiving antennary 77.Wing flexion: (0) Absent; (1) Present. nerves; (1) Small lobes, without antennary nerves. 78.Forewings truncate: (0) No; (1) Yes. ARTICLE IN PRESS 332 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

79.Sclerotization of forewing ( Kristensen 1981): connective endoskeleton; (3) With cuticular spinae (0) Membranous; (1) Sclerotized. on connective endoskeleton; (4) Endoskeleton 80.Prominent precostal field: (0) Absent; (1) Present. mainly cuticular. 81.Basal wing brace ( Kukalova´ -Peck 1985): 104.Metaspina ( Kristensen 1975): (0) Present; (0) Absent; (1) Present. (1) Absent. 82.Forewing media fusion: (0) Absent; (1) MA+MP; 105.Pleural apodeme: (0) Not strongly developed in (2) MA+R. meso- and metathorax; (1) Strongly developed. 83.Anal furrow ( Hennig 1969): (0) Absent; 106.Pterothoracic muscles ( Kristensen 1975): (1) Present. (0) Present; (1) Absent. 84.Enlarged hindwing vannus ( Kristensen 1981): 107.Indirect wing muscles ( Boudreaux 1979a): (0) Small; (1) Enlarged. (0) Developed; (1) Reduced. 85.Pleating of vannus ( Kristensen 1981): (0) Absent; 108.Metathoracic tergosternal wing elevators: (1) Present. (0) Present; (1) Weak. 86.Locomotory limbs: (0) 7-segmented; (1) 6- 109.Metathoracic and abdominal sternum I fused: segmented; (2) Tibiotarsus. (0) Free; (1) Fused. 87.Coxa-body articulation: (0) Sternal; (1) None 110.Spiracles ( Bitsch and Bitsch 2000: ch.44): (0) 6 or (arthrodial membrane); (2) Dicondylic; (3) 7 pairs of trunk spiracles on segments with long Pleural. tergites (post-maxillipede segments 3, 5, 8, 10, 12 88.Mobility of pleural articulation of coxa: (0) and 14); (1) One pair, on side of head; (2) 3 pairs, Mobile; (1) Immobile. on thorax only; (3) Up to 4 pairs on thorax and 7 89.Legs I: (0) Locomotory appendages; pairs on abdomen; (4) 2 pairs of thoracic spiracles. (1) Maxillipede housing poison gland; (2) Sensory; 111.Direct spiracular musculature ( Whiting et al. (3) First maxillipede resembling (second) maxilla. 1997: ch.25): (0) Absent; (1) Present. 90.Male forelegs clasping: (0) Absent; (1) Present. 112.Posterior tracheation of leg ( Kristensen 1975): 91.Jointed ‘‘knee’’: (0) Absent; (1) Present; (2) (0) Absent; (1) Present. Rotating pivot (Manton 1972; Kristensen 1998: 113.Abdominal segmentation: (0) Abdomen of 11 ch.14). segments+telson (=12); (1) 11 segments; (2) 10 92.Femoro-tibial articulation: (0) Moncondylic; segments; (3) 6 segments. (1) Dicondylic. 114.Ventral tube: (0) Absent; (1) Present. 93.Tarsi: (0) Not subdivided; (1) 3-segmented; (2) 5- 115.Shape of ventral tube ( D’Haese 2003: ch.104): segmented; (3) 2-segmented. (0) Cylindrical, elongate (optical section circular), 94.Tibiotarsal setae of T row ( D’Haese 2003: ch.88): longer than wide; (1) Not prominent (optical (0) Absent; (1) Present. section oval), wider than long. 95.Tibiotarsal M setae ( D’Haese 2003: ch.89): 116.Furcula: (0) Absent; (1) Present. (0) Absent; (1) Present. 117.Pseudocelli ( D’Haese 2003: ch.124+125): 96.Ratio tibiotarsus:claw ( D’Haese 2003: ch.94): (0) Absent; (1) Present. (0) Much more than 2; (1) Between 1 and 2. 118.Pseudopores ( Deharveng 1978; D’Haese 2003: ch. 97.Pretarsus ( Beutel and Gorb 2001): (0) Retained as 130): (0) Absent; (1) Present. a small separate sclerite and attached claws; 119.Paired larval gills: (0) Absent; (1) Present, lateral. (1) Separate sclerite reduced, transformed into 120.Posterior tracheal larval gills: (0) Absent; planta and unguitractor plate. (1) Present. 98.Pretarsal claws ( Hennig 1969, 1981; Kristensen 121.Eversible vesicles ( Bitsch and Bitsch 2000: ch.34): 1975): (0) Two; (1) One. (0) Coxal vesicles on more than 5 abdominal 99.Hairy adhesive soles of two proximal tarsomeres segments; (1) One pair of coxal vesicles on o5 (Beutel and Gorb 2001): (0) Absent; (1) Present. abdominal segments; (2) Vesicles at distal part of 100.Claw pad, one claw transformed into thickened first abdominal appendage (leglet or collophore) attachment organ (Beutel and Gorb 2001): (Klass and Kristensen 2001); (3) Absent. (0) Absent; (1) Present. 122.Sixth abdominal segment ( D’Haese 2003: ch.122): 101.Thoracic leg musculature ( Manton 1972; (0) Simple; (1) Bilobate. Kristensen 1991): (0) Without trochanteral femur- 123.Pregenital abdominal styli: (0) Proximal to coxae; twisting muscles; (1) With such muscles. (1) Reduced styli; (2) Absent. 102.Two coxal proprioreceptor organs ( Lombardo 124.Abdominal sterna ( Kristensen 1998: ch.67): 1973; Hennig 1981) (0) Absent; (1) Present. (0) Large; (1) Reduced. 103.Trunk endoskeleton in each segment ( Bitsch and 125.Female SVII ( Hennig 1981): (0) Small; (1) Large. Bitsch 2000: ch.25): (0) Pair of lateral connective 126.Gonopore: (0) Near back of body, on segment plates; (1) Pair of sternocoxal rods; (2) Complex XVII; (1) On sternite of trunk segment IV; (2) On ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 333

abdominal segment XI; (3) On abdominal segment 148.Ventral vessel ( Bitsch and Bitsch 1998: ch.17): V; (4) Between abdominal segments VIII and IX; (0) Supraneural; (1) Subneural; (2) Absent. (5) Abdominal segment VIII (female), X (male); 149.Digestion: (0) Extracellular; (1) Intracellular (6) On sixth pereion segment (=abdominal (Homarus: Barker and Gibson 1977). segment III of Hexapoda); (7) On twelfth pereion 150. ( Bitsch and Bitsch 1998: ch.6): (0) Absent; segment (=abdominal segment IX of Hexapoda); (1) Differentiated, posterior in esophagus. (8) On sixth pereion segment in female, eighth 151.Proventriculus ( Bitsch and Bitsch 1998: ch.7): pereion segment in male. (0) Absent; (1) Present. 127.Paired female genital openings ( Kristensen 1975; 152.Proventricular neck, before anterior enlarged Boudreaux 1979a): (0) Absent; (1) Present. portion: (0) Absent; (1) Present. 128.Anal valves ( D’Haese 2003: ch.117): (0) Subequal, 153.Gastric caeca ( Bitsch and Bitsch 1998: ch.9): not overlapping; (1) Ventral paired valves (0) Absent; (1) Present. overlapping dorsal unpaired . 154.Peritrophic membrane ( Bitsch and Bitsch 1998: 129.Cerci: (0) Absent; (1) Present. ch.10): (0) Present; (1) Absent. 130.Cerci forcipate, unisegmented, strongly 155.Pyloric region ( Bitsch and Bitsch 1998: ch.11): sclerotized: (0) Absent; (1) Present. (0) Short, simple sphincter or valvula; (1) 131.Paired, articulated furcal rami: (0) Absent; Sphincter followed by pyloric chamber; (2) Short, (1) Present. with ring of flattened cells. 132.Paired terminal spinnerets ( Kraus 1998: ch.49): 156.Proctodeum ( Bitsch and Bitsch 1998: ch.12): (0) Absent; (1) Present. (0) Lacking large posterior dilation; (1) Having 133.Caudal filament: (0) Absent; (1) Present, long; rectal ampulla with differentiated papillae. (2) Short. 157.Malpighian tubules ( Bitsch and Bitsch 1998: ch. 134.Male median caudal filament: (0) Without sensory 14): (0) Elongate tubules; (1) Short papillae; (2) cones; (1) With sensory cones. Absent. 135.: (0) Absent; (1) Present; (2) Vestigial; 158.Ventral nerve cord ( Bitsch and Bitsch 1998: ch.4): (3) Third valvulae forming sheath. (0) Long chain; (1) 3 pairs thoracic ganglia, 4–6 136.Gonangulum in ovipositor base ( Hennig 1969): pairs abdominal; (2) Several ganglia fused (0) Absent; (1) Present. together; (3) All abdominal ganglia fused with 137.Female gonopod, used to manipulate single metathoracic. (Ax 1999): (0) Absent; (1) Present. 159.Tendinous struts: (0) Absent; (1) Present, 138.Male gonopods or gonocoxites ( Bitsch and Bitsch anchoring cuticle. 2000: ch.39): (0) Pair of gonopods on trunk 160.Tracheal system ( Bitsch and Bitsch 1998: ch.15): segment XVII; (1) Gonocoxites; (2) Absent. (0) Tracheae not interconnected; (1) Tracheae 139.Position of gonocoxites: (0) Fused into single with transverse and longitudinal connections; segment borne by segment XI; (1) Two pairs on (2) Absent. segments VIII and IX or only on IX; (2) Fused 161.Ovary ( Bitsch and Bitsch 1998: ch.20): (0) into subgenital plate. Elongated sacs; (1) Ovarioles. 140.Male styli: (0) Expressed; (1) Suppressed. 162.Arrangement of ovarioles ( Bitsch and Bitsch 1998: 141.Male styli IX: (0) Not claspers; (1) Claspers. ch.20): (0) Pectinate; (1) Grouped, inserted into 142.Male parameres ( Bitsch and Bitsch 2000: ch.42): lateral oviduct. (0) Absent; (1) Pair of lateral plates on segment 163.Location of ovary germarium ( Bitsch and Bitsch IX; (2) Sclerites included in phallic complex. 1998: ch.21): (0) In ovarian wall; (1) In apical part 143.Male penes ( Bitsch and Bitsch 2000: ch.43): (0) of each tube. Absent; (1) Paired penes on segment XI; (2) Paired 164.Ovary ( Bitsch and Bitsch 1998: ch.22): penes on segment IX; (3) Median penis. (0) Follicles connected with ovarian epithelium; 144.Male accessory copulatory organs: (0) Absent; (1) Panoistic; (2) Meroistic-polytrophic. (1) Present. 165.Seminal receptacle or spermatheca ( Bitsch and 145.Dorsal vessel ostia ( Bitsch and Bitsch 1998: ch. Bitsch 1998: ch.23): (0) Dorsal; (1) Lateral at base 17): (0) Dorsal vessel elongated, with 7–15 pairs of of ovipositor; (2) Seminal receptacle on each side ostia; (1) Dorsal vessel with 3–6 pairs of ostia; (2) of head; (3) Absent. Short heart in posterior part of cephalothorax, 166.Testis ( Bitsch and Bitsch 1998: ch.24): with few pairs of ostia. (0) Elongate sacs, sometimes fused; (1) Several 146.Open-ended chambers enclosing paired excurrent follicles. ostia: (0) Absent; (1) Present. 167.Arrangement of testicular follicles (Bitch and 147.Dorsal vessel: (0) Rear end open, bidirectional Bitsch 1998: ch.24): (0) Pectinate; (1) flow; (1) Rear end closed. Grouped. ARTICLE IN PRESS 334 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

168.Location of testicular germ tissue ( Bitsch and covering of embryo participates in the definitive Bitsch 1998: ch.25): (0) Ventral or laterodorsal; dorsal closure); (1) Provisional dorsal closure (1) Apical. (embryonic dorsal covering degenerates without 169.Form of spermatozoa ( Bitsch and Bitsch 1998: ch. participating in definitive closure, which is 26): (0) Elongate, flagellate, motile; (1) Encysted, exclusively derived from the embryo). motile at fecundation; (2) Immotile, aflagellate. 180.Amniotic cavity ( Machida and Ando 1998): 170.Spiral ridge on nucleus of sperm ( Dohle 1985): (0) Absent; (1) Present, open; (2) Present, (0) Absent; (1) Present. closed (amnioserosal fold fuses beneath the 171.Supernumary axonemal tubules (peripheral embryo). singlets): (0) Absent; (1) Present. 181.Egg tooth on embryonic cuticle of second maxilla 172.Protofilaments in wall of accessory tubules of (Dohle 1985): (0) Absent; (1) Present. axoneme (Dallai and Afzelius 1999, Jamieson 182.Rotation of labial Anlagen ( Ikeda and Machida et al.1999 ): (0) 13; (1) 16. 1998): (0) Absent; (1) Present. 173.Medial microtubules in axoneme ( Jamieson et al. 183.Postembryonic development: (0) Anamorphosis; 1999): (0) Present; (1) Absent. (1) Epimorphosis. 174.Sperm axoneme sheaths ( Jamieson et al.1999 ): 184.Subimago ( Kristensen 1975): (0) Present; (1) (0) Absent; (1) Present. Absent. 175.Sperm centriole adjunct ( Jamieson et al.1999 ): 185.Imaginal lifespan: (0) Normal, feeding; (1) (0) Present; (1) Absent; (2) Crystalline accessory Shortened, nonfeeding. bodies developed from the centriole. 186.Habitat of nymphs: (0) Terrestrial; (1) Aquatic. 176.Pair of elongate, cristate mitochondrial derivatives 187.Female broodcare of eggs and first one or two in sperm (Jamieson et al.1999 ): (0) Absent; (1) free-living nymphs: (0) Absent; (1) Present. Present. 188.Jumping by abdominal push: (0) Absent; 177.Sperm conjugation ( Kristensen 1998: ch.62): (0) (1) Present. Absent; (1) Spermatozoa paired. 189.Insemination mode ( Bitsch and Bitsch 1998: ch. 178.Egg cleavage ( Bitsch and Bitsch 1998: ch.30): 29): (0) Indirect, via stalked spermatophore; (0) Total and equal; (1) Early total cleavage (1) Indirect, via droplets; (2) Indirect, via followed by superficial; (2) Superficial cleavage. spermatophore in web; (3) Indirect, via 179.Dorsal closure of embryo ( Machida and Ando spermatolophids; (4) Indirect, claspers; 1998): (0) Definitive dorsal closure (dorsal (5) Copulation. ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 335 Morphological data matrix; ‘‘A’’ represents a 0, 1 polymorphism; ‘‘–‘‘represents inapplicable states; ‘‘?’’ represents unknown states. Appendix B ARTICLE IN PRESS 336 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 337

References Deharveng, L., 1978. Note sur un type d’organites te´ gumen- taires originaux rencontre´ chez les isotomides (Collembola). Ax, P., 1999. Das System der Metazoa II. Ein Lehrbuch der In: Dallai, R.(Ed.),First International Seminar on phylogenetischen Systematik.Gustav Fischer Verlag, .Accademia delle Scienze di Siena detta de’ Stuttgart. Fisiocritici, Siena, pp.59–62. Barker, P.L., Gibson, R., 1977. Observations on the feeding Delsuc, F., Phillips, M.J., Penny, D., 2003. Comment on mechanism, structure of the gut, and digestive physiology ‘‘Hexapod origins: monophyletic or paraphyletic? Science of the European lobster Homarus gammarus.J.Exp.Mar. 301, 1482. Biol.Ecol.26, 297–324. D’Haese, C.A., 2002a. Were the first semi-aquatic? Beutel, R.G., Gorb, S.N., 2001. Ultrastructure of attachment A phylogenetic approach by means of 28S rDNA and specializations of hexapods (Arthropoda): evolutionary optimization alignment.Proc.R.Soc.London B 269, patterns inferred from a revised ordinal phylogeny.J.Zool. 1143–1151. Syst.Evol.Res.39, 177–207. D’Haese, C.A., 2002b. Phylogeny of apterygote hexapods. Bitsch, C., Bitsch, J., 1998. Internal anatomy and phylogenetic Abstracts, 20th Annual Meeting of the Willi Hennig relationships among apterygote insect clades (Hexapoda). Society. 18, 220. Ann.Soc.Entomol.Fr.N.S.34,339–363. D’Haese, C.A., 2003. Morphological appraisal of Collembola Bitsch, C., Bitsch, J., 2000. The phylogenetic interrelationships phylogeny with special emphasis on Poduromorpha and of the higher taxa of apterygote hexapods.Zool.Scr.29, a test of the aquatic origin hypothesis.Zool.Scr.32, 131–156. 563–586. Bitsch, C., Bitsch, J., 2002. The endoskeletal structures in Dohle, W., 1985. Phylogenetic pathways in the Chilopoda. arthropods: cytology, morphology and evolution.Arthro- Bijdr.Dierkd.55, 55–66. pod Struct.Dev.30, 159–177. Dohle, W., 2001. Are the insects terrestrial crustaceans? A Boudreaux, H.B., 1979a. Arthropod Phylogeny with Special discussion of some new facts and arguments and the Reference to Insects.Wiley, New York. proposal of the proper name Tetraconata for the mono- Boudreaux, H.B., 1979b. Significance of intersegmental tendon phyletic unit Crustacea+Hexapoda.Ann.Soc.Entomol. system in arthropod phylogeny and a monophyletic Fr.N.S.37,85–103. classification of Arthropoda. In: Gupta, A.P. (Ed.), Dolphin, K., Belshaw, R., Orme, C.D., Quicke, D.L., 2000. Arthropod Phylogeny.Van Nostrand Reinhold, New Noise and incongruence: interpreting results of the incon- York, pp.551–586. gruence length difference test.Mol.Phylogenet.Evol.17, Carapelli, A., Frati, F., Nardi, F., Dallai, R., Simon, C., 2000. 401–406. Molecular phylogeny of the apterygotan insects based on Edgecombe, G.D., Wilson, G.D.F., Colgan, D.J., Gray, M.R., nuclear and mitochondrial genes.Pedobiologia 44, Cassis, G., 2000. Arthropod cladistics: combined analysis 361–373. of Histone H3 and U2 snRNA sequences and morphology. Carpenter, F.M., 1992. Treatise on Invertebrate Paleontology, Cladistics 16, 155–203. Part R, Arthropoda 4, vol.3&4: Superclass Hexapoda. Edgecombe, G.D., Giribet, G., Wheeler, W.C., 2002. Phylo- Geological Society of America+University of Kansas, geny of Henicopidae (Chilopoda: Lithobiomorpha): a Boulder, CO+Lawrence, KS. combined analysis of morphology and five molecular loci. Carpenter, J.M., Wheeler, W.C., 1999. Cladı´ stica nume´ rica, Syst.Entomol.27, 31–64. ana´ lisis simulta´ neo y filogenia de hexa´ podos.In: Melic, A., Farris, J.S., 1997. The future of phylogeny reconstruction. de Haro, J.J., Me´ ndez, M., Ribera, I. (Eds.), Filogenia y Zool.Scr.26, 303–311. Evolucio´ n de Arthropoda.Bol.Soc.Entomol.Aragon.26, Farris, J.S., Ka¨ llersjo¨ , M., Kluge, A.G., Bult, C., 1995. Testing 333–346 significance of incongruence.Cladistics 10, 315–319. Colgan, D.J., McLauchlan, A., Wilson, G.D.F., Livingston, Farris, J.S., Albert, V.A., Ka¨ llersjo¨ , M., Lipscomb, D., Kluge, S.P., Edgecombe, G.D., Macaranas, J., Cassis, G., Gray, A.G., 1996. Parsimony jackknifing outperforms neighbor- M.R., 1998. Histone H3 and U2 snRNA DNA sequences joining.Cladistics 12, 99–124. and arthropod molecular evolution.Aust.J.Zool.46, Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek, R.C., 419–437. 1994.DNA primers for amplification of mitochondrial Dallai, R., Afzelius, B.A., 1999. Accessory microtubules in cytochrome c oxidase subunit I from diverse metazoan insect spermatozoa: structure, function and phylogenetic invertebrates.Mol.Mar.Biol.Biotechnol.3, 294–299. significance.In: Cagnon, C.(Ed.),The Male Gamete: From Franc¸ ois, J., 1969. Anatomie et morphologie ce´ phalique des Basic Science to Clinical Applications.Cache River Press, protoures (Insecta Apterygota).Me ´ m.Mus.Natn.Hist. Vienna, IL, pp.333–350. Nat.59, 1–144. Dallai, R., Lupetti, P., Frati, F., Nardi, F., Afzelius, B.A., Fu¨ rst von Lieven, A., 2000. The transformation from 2001a.Binucleate and biflagellate spermatozoa in Tricho- monocondylous to dicondylous mandibles in the Insecta. lepidion gertschi Wygodzinsky (Insecta, Zygentoma).Tissue Zool.Anz.239, 139–146. Cell 33, 606–613. Gereben-Krenn, B.-A., Pass, G., 1999. Circulatory organs Dallai, R., Lupetti, P., Frati, F., Nardi, F., Afzelius, B.A., of Diplura (Hexapoda): the basic design in Hexapoda? Int. 2001b.Sperm ultrastructure and spermiogenesis in the relic J.Insect Morphol.28, 71–79. [sic!] species Tricholepidion gertschi Wygodzinsky (Insecta, Gereben-Krenn, B.-A., Pass, G., 2000. Circulatory organs of Zygentoma).Tissue Cell 33, 596–605. abdominal appendages in primitive insects (Hexapoda: ARTICLE IN PRESS 338 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

Archaeognatha, Zygentoma and Ephemeroptera).Acta Koch, M., 2003. Monophyly of the Myriapoda? Reliability of Zool.81, 285–292. current arguments.Afr.Inverts.44, 137–153. Giribet, G., 2001. Exploring the behavior of POY, a program Kraus, O., 1998. Phylogenetic relationships between higher for direct optimization of molecular data.Cladistics 17, taxa of tracheate arthropods. In: Fortey, R.A., Thomas, S60–S70. R.H. (Eds.), Arthropod Relationships. Chapman & Hall, Giribet, G., 2003. Stability in phylogenetic formulations and London, pp.295–303. its relationship to nodal support.Syst.Biol.52, 554–564. Kraus, O., 2001. ‘‘Myriapoda’’ and the ancestry of the Giribet, G., Ribera, C., 2000. A review of arthropod Hexapoda.Ann.Soc.Entomol.Fr.N.S.37,105–127. phylogeny: new data based on ribosomal DNA sequences Kraus, O., Kraus, M., 1994. Phylogenetic system of the and direct character optimization.Cladistics 16, 204–231. Tracheata (): on ‘‘Myriapoda’’ : Insecta Giribet, G., Wheeler, W.C., 2001. Some unusual small-subunit interrelationships, phylogenetic age and primary ecological ribosomal RNA sequences of metazoans.Am.Mus.Novit. niches.Verh.Naturwiss.Ver.Hamburg 34, 5–31. 3337, 1–14. Kristensen, N.P., 1975. The phylogeny of hexapod ‘‘orders’’. A Giribet, G., Edgecombe, G.D., Wheeler, W.C., 2001. Arthro- critical review of recent accounts.Z.Zool.Syst.Evolu- pod phylogeny based on eight molecular loci and morphol- tionsforsch.13, 1–44. ogy.Nature 413, 157–161. Kristensen, N.P., 1981. Phylogeny of insect orders. Annu. Rev. Goloboff, P.A., 1998. Nona, v. 2.0. Program and documenta- Entomol.26, 135–157. tion available at http://www.cladistics.comwww.cladistics. Kristensen, N.P., 1991. Phylogeny of extant hexapods. In: com Naumann, I.D. (Ed.), The Insects of Australia. CSIRO Goloboff, P.A., 1999. Analyzing large data sets in reasonable Australia, Melbourne, pp.125–140. times: solutions for composite optima.Cladistics 15, Kristensen, N.P., 1995. Forty years’ insect phylogenetic 415–428. systematics: Hennig’s ‘‘Kritische Bemerkungeny’’ and Hennig, W., 1953. Kritische Bermerkungen zum phylo- subsequent developments.Zool.Beitr.36, 83–124. genetischen System der Insekten.Beitr.Entomol.3, 1–83. Kristensen, N.P., 1998. The groundplan and basal diversifica- Hennig, W., 1969. Die Stammesgeschichte der Insekten. W. tion of the hexapods. In: Fortey, R.A., Thomas, R.H. Kramer, Frankfurt. (Eds.), Arthropod Relationships. Chapman & Hall, Lon- Hennig, W., 1981. Insect Phylogeny. Wiley, New York. don, pp.281–293. Hovmo¨ ller, R., Pape, T., Ka¨ llersjo¨ , M., 2002. The Palaeoptera Kukalova´ -Peck, J., 1983. Origin of the and wing problem: basal pterygote phylogeny inferred from 18S and articulation from the arthropodan leg.Can.J.Zool.61, 28S rDNA sequences.Cladistics 18, 313–323. 1618–1669. ICZN (International Commission on Zoological Nomencla- Kukalova´ -Peck, J., 1985. Ephemeroid wing venation based ture), 1999.International Code of Zoological Nomencla- upon new gigantic mayflies, and basic ture, fourth ed.International Trust for Zoological morphology, phylogeny, and of pterygote Nomenclature, London. insects (Insecta, Ephemerida).Can.J.Zool.63, 933–955. Ikeda, Y., Machida, R., 1998. Embryogenesis of the Dipluran Kukalova´ -Peck, J., 1987. New Carboniferous Diplura, Mon- Lepidocampa weberi Oudemans (Hexapoda, Diplura, Cam- ura, and , the hexapod groundplan, and the role podeidae): external morphology.J.Morphol.237, 101–115. of thoracic side lobes in the origin of wings (Insecta).Can. Jamieson, B.G.M., 1987. The Ultrastructure and Phylogeny of J.Zool.65, 2327–2345. Insect Spermatozoa.Cambridge University Press, Cam- Kukalova´ -Peck, J., 1991. Fossil history and the evolution of bridge. hexapod structures. In: Naumann, I.D. (Ed.), The Insects Jamieson, A.V.C., Dallai, R., Afzelius, B.A., 1999. Insects. of Australia.CSIRO Australia, Melbourne, pp.141–179. Their Spermatozoa and Phylogeny.Science Publishers, Kukalova´ -Peck, J., 1992. The ‘‘Uniramia’’ do not exist: the Enfield, NH. ground plan of the Pterygota as revealed by Klass, K.D., Kristensen, N.P., 2001. The ground plan and from Russia (Insecta: Paleodictyopter- affinities of hexapods: recent progress and open problems. oidea).Can.J.Zool.70, 236–255. Ann.Soc.Entomol.Fr.N.S.37,265–298. Kukalova´ -Peck, J., 1998. Arthropod phylogeny and ‘basal’ Klass, K.D., Zompro, O., Kristensen, N.P., Adis, J., 2002. morphological structures. In: Fortey, R.A., Thomas, R.H. Mantophasmatodea: a new insect order with extant (Eds.), Arthropod Relationships. Chapman & Hall, Lon- members in the Afrotropics.Science 296, 1456–1459. don, pp.249–268. Kluge, N.J., 1999. Mitos en sistema´ tica y principios de Lauterbach, K.-E., 1983. Zum Problem der Monophylie der nomenclatura zoolo´ gica. In: Melic, A., de Haro, J.J., Crustacea.Verh.Naturwiss.Ver.Hamburg 26, 293–320. Me´ ndez, M., Ribera, I., (Eds.), Filogenia y Evolucio´ nde Lombardo, C.A., 1973. On the presence of two coxal organs in Arthropoda.Bol.Soc.Entomol.Aragon 26, 347–377 Pterygota insects.Monit.Zool.Ital.N.S.7, 243–246. Koch, M., 1997. Monophyly and phylogenetic position of the Luan, Y.X., Zhang, Y.P., Yue, Q.Y., Pang, J.F., Xie, R.D., Diplura (Hexapoda).Pedobiologia 41, 9–12. Yin, W.Y., 2003. Ribosomal DNA gene and phylogenetic Koch, M., 2000. The cuticular cephalic endoskeleton of relationships of Diplura and lower hexapods.Sci.China primarily wingless hexapods: ancestral state and evolu- Ser.C 46, 67–76. tionary changes.Pedobiologia 44, 374–385. Machida, R., Ando, H., 1998. Evolutionary changes in Koch, M., 2001. Mandibular mechanisms and the evolution of developmental potentials of the embryo proper and hexapods.Ann.Soc.Entomol.Fr.N.S.37,129–174. embryonic membranes along with the derivative structures ARTICLE IN PRESS G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340 339

in Atelocerata, with special reference to Hexapoda (Ar- Scholtz, G., Mittmann, B., Gerberding, M., 1998. The pattern thropoda).Proc.Arthropod Embryol.Soc.Jpn.33, 1–13. of Distal-less expression in the mouthparts of crustaceans, Mallatt, J.M., Garey, J.R., Shultz, J.W., 2004. Ecdysozoan myriapods and insects: new evidence for a gnathobasic phylogeny and Bayesian inference: first use of nearly mandible and the common origin of Mandibulata.Int. complete 28S and 18S rRNA gene sequences to classify J.Dev.Biol.42, 801–810. the arthropods and their kin.Mol.Phylogenet.Evol.31, Silvestri, F., 1912. Die Thysanuren des baltischen Berns- 178–191. teins.Schrift.Physik.-oekonom.Ges.Koenigsberg53, Manton, S.M., 1972. The evolution of arthropodan locomo- 42–66. tory mechanisms.Part 10.Locomotory habits, morphology Smith, S.W., Overbeek, R., Woese, C.R., Gilbert, W., Gillevet, and the evolution of the hexapod classes.Zool.J.Linn. P.M., 1994. The genetic data environment: an expandable Soc.51, 203–400. GUI for multiple sequence analysis.Comput.Appl.Biosci. Mickevich, M.F., Farris, J.S., 1981. The implications of 10, 671–675. congruence in Menidia.Syst.Zool.27, 143–158. Staniczek, A.H., 2000. The mandible of silverfish (Insecta: Mu¨ ller, C.H.G., Rosenberg, J., Richter, S., Meyer-Rochow, Zygentoma) and mayflies (Ephemeroptera): its mor- V.B., 2003. The compound eye of Scutigera coleoptrata phology and phylogenetic significance.Zool.Anz.239, (Linnaeus, 1758) (Chilopoda: Notostigmophora): an ultra- 147–178. structural reinvestigation that adds support to the Mandi- Strausfeld, N.J., 1998. Crustacean–insect relationships: the use bulata concept.Zoomorphology 122, 191–209. of brain characters to derive phylogeny amongst segmented Nardi, F., Spinsanti, G., Boore, J.L., Carapelli, A., Dallai, R., invertebrates.Brain Behav.Evol.52, 186–206. Frati, F., 2003. Hexapod origins: monophyletic or para- Stys, P., Bilinski, S., 1990. Ovariole types and the phylogeny phyletic? Science 299, 1887–1889. of hexapods.Biol.Rev.Cambridge Philos.Soc.65, Naumann, I.D., 1991. The Insects of Australia. CSIRO 401–429. Australia, Melbourne. Stys, P., Zrzavy, J., 1994. Phylogeny and classification of Negrisolo, E., Minelli, A., Valle, G., 2004. The mitochondrial extant Arthropoda: review of hypotheses and nomencla- genome of the house Scutigera and the mono- ture.Eur.J.Entomol.91, 257–275. phyly versus paraphyly of myriapods.Mol.Biol.Evol.21, Stys, P., Zrzavy, J., Weyda, F., 1993. Phylogeny of the 770–780. Hexapoda and ovarian metamerism.Biol.Rev.68, Nixon, K.C., 1999. The Parsimony Ratchet, a new method for 365–379. rapid parsimony analysis.Cladistics 15, 407–414. Wheeler, W.C., 1995. Sequence alignment, parameter sensitiv- Nixon, K.C., 2002. Winclada, v. 1.00.08. Program and ity, and the phylogenetic analysis of molecular data.Syst. documentation available at www.cladistics.com Biol.44, 321–331. Ogden, T.H., Whiting, M.F., 2003. The problem with ‘‘the Wheeler, W.C., 1996. Optimization alignment: the end of Palaeoptera problem’’: sense and sensitivity.Cladistics 19, multiple sequence alignment in ? Cladistics 12, 432–442. 1–9. Page´ s, J., 1997. Notes sur les Diplures Rhabdoures (Insectes, Wheeler, W.C., 1998. Sampling, groundplans, total evidence Apterygotes) no 1—Diplura Genavensia XXII.Rev.Suisse and the systematics of arthropods. In: Fortey, R.A., Zool.104, 869–896. Thomas, R.H. (Eds.), Arthropod Relationships. Chapman Pass, G., 1991. Antennal circulatory organs in Onychophora, & Hall, London, pp.87–96. Myriapoda and Hexapoda—functional morphology and Wheeler, W.C., 2002. Optimization alignment: down, up, evolutionary implications.Zoomorphologie 110, 145–164. error, and improvements. In: DeSalle, R., Giribet, G., Pass, G., 2000. Accessory pulsatile organs: evolutionary Wheeler, W.C. (Eds.), Techniques in Molecular Systematics innovations in insects.Annu.Rev.Entomol.45, 495–518. and Evolution.Birkha¨ user, Basel, pp.55–69. Paulus, H.F., 1979. Eye structure and the monophyly of the Wheeler, W.C., Whiting, M.F., Wheeler, Q.D., Carpenter, Arthropoda. In: Gupta, A.P. (Ed.), Arthropod Phylogeny. J.M., 2001. The phylogeny of the extant hexapod orders. Van Nostrand Reinhold, New York, pp.299–383. Cladistics 17, 113–169. Rasnitsyn, A.P., 1998. Problem of the basal dichotomy of the Wheeler, W.C., Gladstein, D., DeLaet, J., 2002. POY version winged insects. In: Fortey, R.A., Thomas, R.H. (Eds.), 3.0. Program and documentation available at ftp.amnh.org/ Arthropod Relationships.Chapman & Hall, London, pp. pub/molecular/poy/ 237–248. Whiting, M.F., 1998. Phylogenetic position of the : Richter, S., 2002. The Tetraconata concept: hexapod–crusta- review of molecular and morphological evidence.Int. cean relationships and the phylogeny of Crustacea.Org. J.Insect Morph.Embryol.27, 53–60. Divers.Evol.2, 217–237. Whiting, M.F., 2002. Phylogeny of the holometabolous Richter, S., Edgecombe, G.D., Wilson, G.D.F., 2002. The insect orders based on 18S ribosomal DNA: when bad lacinia mobilis and similar structures–a valuable character things happen to good data. In: DeSalle, R., Giribet, G., in arthropod phylogenetics? Zool.Anz.241, 339–361. Wheeler, W.C. (Eds.), Molecular Systematics and Evolu- Ruiz-Trillo, I., Paps, J., Loukota, M., Ribera, C., Jondelius, tion: Theory and Practice.Birkha ¨ user Verlag, Basel, U., Bagun˜a`, J., Riutort, M., 2002. A phylogenetic analysis pp.69–83. of myosin heavy chain type II sequences corroborates that Whiting, M.F., Carpenter, J.M., Wheeler, Q.D., Wheeler, Acoela and Nemertodermatida are basal bilaterians.Proc. W.C., 1997. The Strepsiptera problem: phylogeny of the Natl.Acad.Sci.USA 99, 11246–11251. holometabolous insect orders inferred from 18S and 28S ARTICLE IN PRESS 340 G.Giribet et al./ Organisms, Diversity & Evolution 4 (2004) 319–340

ribosomal DNA sequences and morphology.Syst.Biol.46, Wygodzinsky, P., 1961. On a surviving representative of the 1–68. Lepidotrichidae (Thysanura).Ann.Entomol.Soc.Am.54, Willmann, R., 1998. Advances and problems in insect 621–627. phylogeny. In: Fortey, R.A., Thomas, R.H. (Eds.), Xiong, B., Kocher, T.D., 1991. Comparison of mitochondrial Arthropod Relationships.Chapman & Hall, London, pp. DNA sequences of seven morphospecies of black flies 269–279. (Diptera: Simuliidae).Genome 34, 306–311. Wingstrand, K.G., 1973. The spermatozoa of the thysanuran Zhang, Y., Zhang, Y., Luan, Y., Chen, Y., Yin, W., 2001. insects Petrobius brevistylis Carp.and Lepisma saccharina Phylogeny of higher taxa of hexapoda according to L.Acta Zool.54, 31–52. 12sRNA [sic!] sequences.Chin.Sci.Bull.46, 840–842.