D070p001.Pdf

Total Page:16

File Type:pdf, Size:1020Kb

D070p001.Pdf DISEASES OF AQUATIC ORGANISMS Vol. 70: 1–36, 2006 Published June 12 Dis Aquat Org OPENPEN ACCESSCCESS FEATURE ARTICLE: REVIEW Guide to the identification of fish protozoan and metazoan parasites in stained tissue sections D. W. Bruno1,*, B. Nowak2, D. G. Elliott3 1FRS Marine Laboratory, PO Box 101, 375 Victoria Road, Aberdeen AB11 9DB, UK 2School of Aquaculture, Tasmanian Aquaculture and Fisheries Institute, CRC Aquafin, University of Tasmania, Locked Bag 1370, Launceston, Tasmania 7250, Australia 3Western Fisheries Research Center, US Geological Survey/Biological Resources Discipline, 6505 N.E. 65th Street, Seattle, Washington 98115, USA ABSTRACT: The identification of protozoan and metazoan parasites is traditionally carried out using a series of classical keys based upon the morphology of the whole organism. However, in stained tis- sue sections prepared for light microscopy, taxonomic features will be missing, thus making parasite identification difficult. This work highlights the characteristic features of representative parasites in tissue sections to aid identification. The parasite examples discussed are derived from species af- fecting finfish, and predominantly include parasites associated with disease or those commonly observed as incidental findings in disease diagnostic cases. Emphasis is on protozoan and small metazoan parasites (such as Myxosporidia) because these are the organisms most likely to be missed or mis-diagnosed during gross examination. Figures are presented in colour to assist biologists and veterinarians who are required to assess host/parasite interactions by light microscopy. KEY WORDS: Identification · Light microscopy · Metazoa · Protozoa · Staining · Tissue sections Resale or republication not permitted without written consent of the publisher INTRODUCTION identifying the type of epithelial cells that compose the intestine. Generally, identification from sections relies on Classical keys are used extensively to assist with the recognising morphological detail, and determining the identification of whole protozoan and metazoan para- life stage of the parasite in the fish. The size of a parasite sites. However, such keys are of limited use for parasite can be crucial for identification, but shrinkage occurring identification in stained tissue sections as specific detail after fixation may make measurements based on fresh or features may not be present in sections, which are typ- specimens inapplicable to parasites in fixed material. ically 3 to 5 µm thick. References to these taxonomic The host specificity of particular parasites, the habitat keys are generally not cited in this manuscript. Although (e.g. fresh water, brackish water or marine), along with some groups of parasites possess unique features that water temperature and other environmental conditions, enable a diagnosis of whole organisms to be made, many can also provide additional clues to the parasite’s iden- of these features may not be easily observed or identified tity. The location of the parasite in or on the host is also in sections, and the degree of taxonomic detail available important, as some parasites are only found in certain will vary between the major groups. For example, the organs or tissues. For example, ectoparasites such as presence of a good scolex for cestodes may allow identi- certain species of mobile peritrichous ciliates and mono- fication to the order, whereas for nematodes it should be geneans may only occur on the gills, whereas others possible to identify to order, and often to suborder, by parasitise the skin and fins as well as the gills. *Email: [email protected] © Inter-Research 2006 · www.int-res.com 2 Dis Aquat Org 70: 1–36, 2006 Infective agents often cause typical tissue responses carefully removed for fixation in formal saline. The that vary as the infection progresses from acute to demonstration of certain tissue components requires chronic or disseminated phases. Characteristic patho- the use of an alternative fixative such as Bouin’s solu- logical changes (or the lack thereof) associated with tion. Poor handling before fixation can induce tissue certain infestations can contribute to their identifica- changes; for example, the liver serosa in salmonids tion. For example, the liver, gall bladder, kidney and may show tissue changes as a result of handling gonads of fish may be grossly discoloured if infected with forceps including a localised necrosis or capillary with certain protozoa, microsporidia or myxosporea. dilatation. Tissues may contain areas of consolidation, encapsula- Processing. Serial sections can provide further infor- tion, granuloma, inflammation, necrosis or repair asso- mation for identification as diagnostic features used for ciated with parasitic infection. When considered with parasite identification may not be visible in all sections. relevant clinical information, the histological features Ectoparasites and endoparasites that are not firmly can provide sufficient information to confine the search attached to host tissues can easily be lost from the to a particular type of organism or even a specific tissues during fixation and processing and require care entity. In amoebic gill disease (AGD), for example, during processing. In some cases orientation of the amoebae are usually found along hyperplastic gill tis- tissue is important; for example, longitudinal sections sue forming characteristic lesions (Adams & Nowak of gills are usually preferable for examination due to 2001). The condition of the parasite can also affect the the 3-dimensional structure. Lastly, it is important to host response. The host response to certain protozoa correlate findings whenever possible from both gross and to microsporidia that have dispersed from rup- and histological examination. tured xenomas can be severe, as can the response to Staining. A range of staining techniques is used for dead or deteriorating parasites. Conversely, a severe observing parasites in tissue sections and the most reaction of a host to a parasite can even obscure the widely used is the standard haematoxylin and eosin presence of the parasite. stain, commonly called H&E. This stain is often Additional descriptions for recognition of parasites in sufficient for identification of larger parasites such as tissue sections, and the associated histopathological helminths, leeches and crustacea. In the H&E method changes observed in fish and mammalian tissues in- the nuclei of cells are stained by the haematoxylin fected with protozoan and metazoan parasites, are whilst the cytoplasm is coloured by the eosin. In addi- available in publications including Ribelin & Migaki tion, special staining techniques designed to demon- (1975), Ferguson (1989), Lom & Dyková (1992), Bruno strate diagnostic features of organisms can be useful & Poppe (1996), Gardiner et al. (1998), Kent & Poppe for identification (Table 1). For example, Giemsa stain- (1998), Gardiner & Poynton (1999), Roberts (2001), ing is useful for a range of protozoan parasites and Nowak et al. (2002), and Woo et al. (2002). The present some metazoans (Table 1), particularly for distinguish- review features the appearance of finfish parasites in ing myxosporidian spores, as the polar capsules stain colour photographs of histological sections. Special- dark against a pale background. In addition, Feulgen’s ized terms used to describe morphological features nuclear reaction for selective staining of DNA and the and life cycle stages of parasites are defined in the sec- periodic acid-Schiff (PAS) reaction for staining of poly- tions describing specific parasite groups. For addi- saccharides may be helpful for identifying a variety of tional glossaries of parasitological and histopatho- parasites (Table 1). Gram staining or acid-fast staining logical terms, the reader is referred to texts such as (Ziehl-Neelsen) can be used to stain Microsporidian Chitwood & Lichtenfels (1972), Lom & Dyková (1992), and Myxosporidian spores in tissue sections or smears. Bruno & Poppe (1996), Kent & Poppe (1998), and The latter technique is also used for observation of coc- Hoffman (1999). cidian oocysts. A combination of H&E-stained sections and other stains can help to identify some parasite structures. For example, to observe various features of TECHNIQUES amoebae in tissue sections, H&E, Feulgen, and Giemsa stains are often used. Some selective staining methods Fixation. Tissues begin to undergo autolysis rapidly have been developed, such as the method described after death and rapid fixation is essential. Small fish, by Sterba et al. (1989) for selective staining of hooks less than 2.0 cm in length, can be preserved whole in a of echinococci, cysticerci and tapeworms in histologi- fixative such as 10% buffered formol saline, providing cal sections. an abdominal flap has been cut and removed. This Immunohistochemical staining procedures and nucleic practice allows the fixative to penetrate the tissues. acid probes for in situ hybridisation have been devel- Individual tissues from larger fish must be dissected oped for specific identification of some economically using a scalpel or pointed scissors and forceps, and important fish parasites (see e.g. Bartholomew et al. Bruno et al.: Identification of protozoan and metazoan parasites 3 Table 1. Examples of special stains used for identification of parasites in histological sections. PAS: periodic acid-Schiff Stain Parasite group Feature Source Acetic acid /Alum carmine Platyhelminthes Acanthocephala Alcian blue/PAS Neoparamoeba
Recommended publications
  • Viral Haemorrhagic Septicaemia Virus (VHSV): on the Search for Determinants Important for Virulence in Rainbow Trout Oncorhynchus Mykiss
    Downloaded from orbit.dtu.dk on: Nov 08, 2017 Viral haemorrhagic septicaemia virus (VHSV): on the search for determinants important for virulence in rainbow trout oncorhynchus mykiss Olesen, Niels Jørgen; Skall, H. F.; Kurita, J.; Mori, K.; Ito, T. Published in: 17th International Conference on Diseases of Fish And Shellfish Publication date: 2015 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Olesen, N. J., Skall, H. F., Kurita, J., Mori, K., & Ito, T. (2015). Viral haemorrhagic septicaemia virus (VHSV): on the search for determinants important for virulence in rainbow trout oncorhynchus mykiss. In 17th International Conference on Diseases of Fish And Shellfish: Abstract book (pp. 147-147). [O-139] Las Palmas: European Association of Fish Pathologists. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DISCLAIMER: The organizer takes no responsibility for any of the content stated in the abstracts.
    [Show full text]
  • New Zealand's Genetic Diversity
    1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses).
    [Show full text]
  • Working Group on Pathology and Diseases of Marine Organisms (WGPDMO)
    ICES WGPDMO REPORT 2018 AQUACULTURE STEERING GROUP ICES CM 2018/ASG:01 REF. ACOM, SCICOM Report of the Working Group on Pathology and Diseases of Marine Organisms (WGPDMO) 13-17 February 2018 Riga, Latvia International Council for the Exploration of the Sea Conseil International pour l’Exploration de la Mer H.C. Andersens Boulevard 44–46 DK-1553 Copenhagen V Denmark Telephone (+45) 33 38 67 00 Telefax (+45) 33 93 42 15 www.ices.dk [email protected] Recommended format for purposes of citation: ICES. 2018. Report of the Working Group on Pathology and Diseases of Marine Or- ganisms (WGPDMO), 13-17 February 2018, Riga, Latvia. ICES CM 2018/ASG:01. 42 pp. https://doi.org/10.17895/ices.pub.8134 The material in this report may be reused using the recommended citation. ICES may only grant usage rights of information, data, images, graphs, etc. of which it has own- ership. For other third-party material cited in this report, you must contact the origi- nal copyright holder for permission. For citation of datasets or use of data to be included in other databases, please refer to the latest ICES data policy on the ICES website. All extracts must be acknowledged. For other reproduction requests please contact the General Secretary. The document is a report of an Expert Group under the auspices of the International Council for the Exploration of the Sea and does not necessarily represent the views of the Council. © 2018 International Council for the Exploration of the Sea ICES WGPDMO REPORT 2018 | i Contents Executive summary ...............................................................................................................
    [Show full text]
  • Detection of Paramoeba Perurans in Scotish Marine Wild Fish Populations
    Bull. Eur. Ass. Fish Pathol., 35(6) 2015, 217 NOTE ȱȱParamoeba perurans in Ĵȱȱ ȱęȱ H. E. B. Stagg*, M. Hall, I. S. Wallace, C. C. Pert, S. Garcia Perez and C. Collins Marine Scotland Science, Marine Laboratory, Aberdeen, AB11 9DB Abstract ȱȱParamoeba perurans, ȱȱȱȱȱȱ ȱȱ¢ȱȱ ȱ ȱęȱȱĴȱȱ ȱǻȱƽȱŘǰřŚŞǼǯȱOverall, the apparent prevalence was low. A ȱęǰȱȱȱȱTrachurus trachurus, ȱǯȱȱȱȱęȱȱȱȱ ȱP. perurans in horse mackerel. Paramoeba perurans is an amoeba parasite and the Salmo salar and rainbow trout Oncorhynchus ȱȱȱȱȱȱǻ Ǽȱ mykiss (Munday et al., 1990); coho salmon O. (Young et al., 2007, Crosbie et al., 2012). The kisutchȱǻ ȱȱǯǰȱŗşŞŞǼDzȱ Scophthalmus ȱ ȱęȱȱȱȱȱŘŖŖŜȱ maximus ǻ¢ȱȱǯǰȱŗşşŞǼDzȱȱȱDicen- with additional outbreaks occurring since 2011 trarchus labrax (Dykova et al., 2000); chinook ȱȱȱ¢ȱ ȱȱȱęȱ salmon O. tshawytscha ǻȱȱǯǰȱŘŖŖŞǼDzȱ ȱȱȱĴȱȱ¢ȱ ayu Plecoglossus altivelis (Crosbie et al., 2010); (Marine Scotland Science unpublished data). ballan wrasse Labrus bergylta (Karlsbakk et al., ȱȱȱȱęȱȱȱ 2013); blue warehou Seriolella brama (Adams (Shinn et al., 2014) especially in the Australian ȱǯǰȱŘŖŖŞǼDzȱȱȱȱDiplodus puntazzo ȱȱ¢ȱȱȱ (Dykova and Novoa, 2001). ȱȱȱȱȱęȱȱȱ ŗşŞŚȱǻ¢ǰȱŗşŞŜǼǯȱȱȱȱȱȱ ȱȱȱ ȱęȱȱȱȱȱȱ reported in the USA (Kent et al., ŗşŞŞǼǰȱ ȱ P. peruransȱȱȱȱȱȱȱȱ (Rodger and McArdle, 1996), the Mediterranean ȱ¢ȱȱȱȱȱȱȱ ǻ¢ȱȱǯǰȱŗşşŞǼǰȱ ȱȱǻȱȱ ȱȱȱ ȱȱȱȱ ǯǰȱŘŖŖŞǼǰȱ ¢ȱǻȱȱǯǰȱŘŖŖŞǼǰȱ ȱ ȱȱęǯȱȱǰȱP. perurans has only (Crosbie et al., 2010), Chile (Bustos et al., 2011) ȱȱȱęȱȱȱ- ȱȱȱȱǻȱȱǯǰȱŘŖŗŚǼǯȱ- ǯȱȱȱȱȱȱ¢ȱȱ ceptible species to AGD include: Atlantic salmon ȱȱ ȱParamoeba ǯȱȱ ȱęȱ * Corresponding author’s e-mail: [email protected] ŘŗŞǰȱǯȱǯȱǯȱȱǯǰȱřśǻŜǼȱŘŖŗś ǻȱȱǯǰȱŘŖŖŞǼȱ ȱȱȱ ȱ ȱȱȱȱȱ¢ȱȱȱ ȱȱȱȱ¢ȱȱȱȱ ȱ ȱȱęȱȱȱ¢ȱǻ ȱ ȱȱ in Tasmania and tested ȱǯǰȱŘŖŖŗǼǯȱ¢ȱęȱ ȱȱ ȱ using histological and immunohistochemical each haul based on the approximate proportion techniques however, the amoeba species was ȱȱȱȱȱȱǰȱȱ ȱȱȱȱȱȱȱȱȱ ȱ ȱȱȱȱȱ ȱȱP.
    [Show full text]
  • Morphological and Molecular Characterization of Ceratomyxa Batam N. Sp. (Myxozoa: Ceratomyxidae) Infecting the Gallbladder of Th
    Parasitology Research (2019) 118:1647–1651 https://doi.org/10.1007/s00436-019-06217-w FISH PARASITOLOGY - SHORT COMMUNICATION Morphological and molecular characterization of Ceratomyxa batam n. sp. (Myxozoa: Ceratomyxidae) infecting the gallbladder of the cultured Trachinotus ovatus (Perciformes: Carangidae) in Batam Island, Indonesia Ying Qiao1 & Yanxiang Shao1 & Theerakamol Pengsakul 2 & Chao Chen1 & Shuli Zheng3 & Weijian Wu3 & Tonny Budhi Hardjo3 Received: 5 September 2017 /Accepted: 17 January 2019 /Published online: 23 March 2019 # Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract A new coelozoic myxozoan species, Ceratomyxa batam n. sp., was identified in cultured carangid fish, Trachinotus ovatus (Perciformes: Carangidae), in waters off Batam Island of Indonesia. The bi- and trivalved spores were observed in the gallbladder of T. ovatus. Mature bivalved spores of C. batam n. sp. were transversely elongated and narrowly crescent in shape, 3.8 ± 0.36 (2.7–4.6) μm long and 19.2 ± 1.75 (16.2–22.0) μm thick. Two sub-spherical polar capsules were 2.3 ± 0.18 (2.0–2.8) μmlong and 2.6 ± 0.16 (2.3–2.9) μm wide. Prevalence was 72.2% in 72 examined T. ovatus according to evaluations dating from November 2016. The maximum likelihood phylogenetic tree based on small subunit rDNA sequence showed similarity with Ceratomyxa robertsthomsoni and Ceratomyxa thalassomae found in Australia. This is the first report of Ceratomyxa species identified in a seawater fish at Batam Island, Indonesia. Keywords Ceratomyxa Batam n. sp. Characterization . Parasite . Gallbladder . Trachinotus ovatus Introduction Cryptocaryonidae) (Dan et al. 2006), Paradeontacylix mcintosh (Trematoda: Sanguinicolidae), Benedenia diesing The Carangid fish ovate pompano (Trachinotus ovatus)isthe (Monogenea: Capsalidae), and Trichodibna ehrenberg most successfully cultured marine fish in the world.
    [Show full text]
  • Notophthalmus Viridescens) by a New Species of Amphibiocystidium, a Genus of Fungus-Like Mesomycetozoan Parasites Not Previously Reported in North America
    203 Widespread infection of the Eastern red-spotted newt (Notophthalmus viridescens) by a new species of Amphibiocystidium, a genus of fungus-like mesomycetozoan parasites not previously reported in North America T. R. RAFFEL1,2*, T. BOMMARITO 3, D. S. BARRY4, S. M. WITIAK5 and L. A. SHACKELTON1 1 Center for Infectious Disease Dynamics, Biology Department, Penn State University, University Park, PA 16802, USA 2 Department of Biology, University of South Florida, Tampa, FL 33620, USA 3 Cooperative Wildlife Research Lab, Department of Zoology, Southern Illinois University, Carbondale, IL 62901, USA 4 Department of Biological Sciences, Marshall University, Huntington, WV 25755, USA 5 Department of Plant Pathology, Penn State University, University Park, PA 16802, USA (Received 21 March 2007; revised 17 August 2007; accepted 20 August 2007; first published online 12 October 2007) SUMMARY Given the worldwide decline of amphibian populations due to emerging infectious diseases, it is imperative that we identify and address the causative agents. Many of the pathogens recently implicated in amphibian mortality and morbidity have been fungal or members of a poorly understood group of fungus-like protists, the mesomycetozoans. One mesomycetozoan, Amphibiocystidium ranae, is known to infect several European amphibian species and was associated with a recent decline of frogs in Italy. Here we present the first report of an Amphibiocystidium sp. in a North American amphibian, the Eastern red-spotted newt (Notophthalmus viridescens), and characterize it as the new species A. viridescens in the order Dermocystida based on morphological, geographical and phylogenetic evidence. We also describe the widespread and seasonal distribution of this parasite in red-spotted newt populations and provide evidence of mortality due to infection.
    [Show full text]
  • FIELD GUIDE to WARMWATER FISH DISEASES in CENTRAL and EASTERN EUROPE, the CAUCASUS and CENTRAL ASIA Cover Photographs: Courtesy of Kálmán Molnár and Csaba Székely
    SEC/C1182 (En) FAO Fisheries and Aquaculture Circular I SSN 2070-6065 FIELD GUIDE TO WARMWATER FISH DISEASES IN CENTRAL AND EASTERN EUROPE, THE CAUCASUS AND CENTRAL ASIA Cover photographs: Courtesy of Kálmán Molnár and Csaba Székely. FAO Fisheries and Aquaculture Circular No. 1182 SEC/C1182 (En) FIELD GUIDE TO WARMWATER FISH DISEASES IN CENTRAL AND EASTERN EUROPE, THE CAUCASUS AND CENTRAL ASIA By Kálmán Molnár1, Csaba Székely1 and Mária Láng2 1Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary 2 National Food Chain Safety Office – Veterinary Diagnostic Directorate, Budapest, Hungary FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Ankara, 2019 Required citation: Molnár, K., Székely, C. and Láng, M. 2019. Field guide to the control of warmwater fish diseases in Central and Eastern Europe, the Caucasus and Central Asia. FAO Fisheries and Aquaculture Circular No.1182. Ankara, FAO. 124 pp. Licence: CC BY-NC-SA 3.0 IGO The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. The views expressed in this information product are those of the author(s) and do not necessarily reflect the views or policies of FAO.
    [Show full text]
  • Assessing Myxozoan Presence and Diversity with Environmental DNA
    *Manuscript Click here to view linked References Assessing myxozoan presence and diversity with environmental DNA Hanna Hartikainen1,2,3*, David Bass3,4, Andrew G. Briscoe3, Hazel Knipe3,5, Andy J. Green6, Beth 5 Okamura3 1 Eawag, Swiss Federal Institute of Aquatic Science and Technology, 8600 Dübendorf, Switzerland 2 Institute for Integrative Biology, ETH Zurich, 8092 Zurich, Switzerland 3 Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, 10 UK 4 Centre for Environment, Fisheries and Aquaculture Science (Cefas), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, UK 5 Cardiff School of Biosciences, Sir Martin Evans Building, Museum Place, Cardiff, CF10 3AX, UK 15 6Department of Wetland Ecology, Estación Biológica de Doñana, EBD-CSIC, Américo Vespucio s/n, 41092 Sevilla, Spain *Corresponding author: Hanna Hartikainen; Eawag, Ueberlandstrasse 133, Duebendorf, Switzerland; phone: +41 58 765 5446; [email protected] 20 Note: Supplementary data associated with this article Abstract Amplicon sequencing on a High Throughput Sequencing (HTS) platform (custom barcoding) was used to detect and characterise myxosporean communities in environmental DNA samples from 25 marine and freshwater environments and in faeces of animals that may serve as hosts or whose prey may host myxosporean infections. A diversity of myxozoans in filtered water samples and in faeces of piscivores (otters and great cormorants) was detected, demonstrating the suitability of lineage specific amplicons for characterising otherwise difficult to sample parasite communities. The importance of using the approach was highlighted by the lack of myxosporean detection using 30 commonly employed, broadly-targeted eukaryote primers. These results suggest that, despite being frequently present in eDNA samples, myxozoans have been generally overlooked in ‘eukaryote- wide’ surveys.
    [Show full text]
  • Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the Mcmurdo Dry Valleys, Antarctica
    Reference: Biol. Bull. 227: 175–190. (October 2014) © 2014 Marine Biological Laboratory Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the McMurdo Dry Valleys, Antarctica YUAN XU1,*†, TRISTA VICK-MAJORS2, RACHAEL MORGAN-KISS3, JOHN C. PRISCU2, AND LINDA AMARAL-ZETTLER4,5,*࿣ 1Laboratory of Protozoology, Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China; 2Montana State University, Department of Land Resources and Environmental Sciences, 334 Leon Johnson Hall, Bozeman, Montana 59717; 3Department of Microbiology, Miami University, Oxford, Ohio 45056; 4The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts 02543; and 5Department of Earth, Environmental and Planetary Sciences, Brown University, Providence, Rhode Island 02912 Abstract. We report an in-depth survey of next-genera- trends in dissolved oxygen concentration and salinity may tion DNA sequencing of ciliate diversity and community play a critical role in structuring ciliate communities. A structure in two permanently ice-covered McMurdo Dry PCR-based strategy capitalizing on divergent eukaryotic V9 Valley lakes during the austral summer and autumn (No- hypervariable region ribosomal RNA gene targets unveiled vember 2007 and March 2008). We tested hypotheses on the two new genera in these lakes. A novel taxon belonging to relationship between species richness and environmental an unknown class most closely related to Cryptocaryon conditions
    [Show full text]
  • Inventory of Parasitic Copepods and Their Hosts in the Western Wadden Sea in 1968 and 2010
    INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch NNIOZIOZ KKoninklijkoninklijk NNederlandsederlands IInstituutnstituut vvooroor ZZeeonderzoekeeonderzoek INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch Texel, April 2012 NIOZ Koninklijk Nederlands Instituut voor Zeeonderzoek Cover illustration The parasitic copepod Lernaeenicus sprattae (Sowerby, 1806) on its fish host, the sprat (Sprattus sprattus) Copyright by Hans Hillewaert, licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license; CC-BY-SA-3.0; Wikipedia Contents 1. Summary 6 2. Introduction 7 3. Methods 7 4. Results 8 5. Discussion 9 6. Acknowledgements 10 7. References 10 8. Appendices 12 1. Summary Ectoparasites, attaching mainly to the fins or gills, are a particularly conspicuous part of the parasite fauna of marine fishes. In particular the dominant copepods, have received much interest due to their effects on host populations. However, still little is known on the copepod fauna on fishes for many localities and their temporal stability as long-term observations are largely absent. The aim of this project was two-fold: 1) to deliver a current inventory of ectoparasitic copepods in fishes in the southern Wadden Sea around Texel and 2) to compare the current parasitic copepod fauna with the one from 1968 in the same area, using data published in an internal NIOZ report and additional unpublished original notes. In total, 47 parasite species have been recorded on 52 fish species in the southern Wadden Sea to date. The two copepod species, where quantitative comparisons between 1968 and 2010 were possible for their host, the European flounder (Platichthys flesus), showed different trends: Whereas Acanthochondria cornuta seems not to have altered its infection rate or per host abundance between years, Lepeophtheirus pectoralis has shifted towards infection of smaller hosts, as well as to a stronger increase of per-host abundance with increasing host length.
    [Show full text]
  • Cefas PANDA Report
    Project no. SSPE-CT-2003-502329 PANDA Permanent network to strengthen expertise on infectious diseases of aquaculture species and scientific advice to EU policy Coordination Action, Scientific support to policies WP4: Report on the current best methods for rapid and accurate detection of the main disease hazards in aquaculture, requirements for improvement, their eventual standardisation and validation, and how to achieve harmonised implementation throughout Europe of the best diagnostic methods Olga Haenen*, Inger Dalsgaard, Jean-Robert Bonami, Jean-Pierre Joly, Niels Olesen, Britt Bang Jensen, Ellen Ariel, Laurence Miossec and Isabelle Arzul Work package leader & corresponding author: Dr Olga Haenen, CIDC-Lelystad, NL ([email protected]) PANDA co-ordinator: Dr Barry Hill, CEFAS, UK; www.europanda.net © PANDA, 2007 Cover image: Koi with Koi Herpes Virus Disease: enophthalmia and gill necrosis (M.Engelsma acknowl.) Contents Executive summary 5 Section 1 Introduction 7 1.1 Description of work 7 1.2 Deliverables 8 1.3 Milestones and expected results 9 1.4 Structure of the report and how to use it 9 1.5 General remarks and links with other WPs of PANDA 9 Section 2 Materials and methods 10 2.1 Task force 10 2.2 Network 10 2.3 Workshops and dissemination 10 2.4 Analysis of data 10 2.5 Why harmonization throughout Europe background and aim 11 2.6. CRL functions 11 Section 3 Results 12 3.1 Task force 12 3.2 Network 12 3.3 Workshops and dissemination 12 3.4 Analysis of data 14 Diseases/pathogens of fish 14 3.4.1 Epizootic haematopoietic necrosis
    [Show full text]
  • Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M
    The University of Maine DigitalCommons@UMaine Maine Sea Grant Publications Maine Sea Grant 2-2015 Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M. Saksida British Columbia Centre for Aquatic Health Sciences Ian Bricknell University of Maine, [email protected] Shawn M. C. Robinson Fisheries and Oceans Canada, St. Andrews Biological Station Simon Jones Fisheries and Oceans Canada, Pacific ioB logical Station Follow this and additional works at: https://digitalcommons.library.umaine.edu/seagrant_pub Part of the Aquaculture and Fisheries Commons, and the Population Biology Commons Repository Citation Saksida, Sonja M.; Bricknell, Ian; Robinson, Shawn M. C.; and Jones, Simon, "Population Ecology and Epidemiology of Sea Lice in Canadian Waters" (2015). Maine Sea Grant Publications. 75. https://digitalcommons.library.umaine.edu/seagrant_pub/75 This Report is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Maine Sea Grant Publications by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. Canadian Science Advisory Secretariat (CSAS) Research Document 2015/004 National Capital Region Population ecology and epidemiology of sea lice in Canadian waters S. Saksida1, I. Bricknell2, S. Robinson3 and S. Jones4 1 British Columbia Centre for Aquatic Health Sciences 871A Island Highway, Campbell River, BC V9W 2C2 2 School of Marine Sciences, University of Maine Orono, ME 04469 3 Fisheries and Oceans Canada, St. Andrews Biological Station 531 Brandy Cove Road, St. Andrews, NB E5B 2L9 4 Fisheries and Oceans Canada, Pacific Biological Station 3190 Hammond Bay Rd., Nanaimo, BC V9T 6N7 February 2015 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada.
    [Show full text]