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RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 6-25-2014 RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, and the Molecular Biology Commons Scholar Commons Citation Ulrich, Robert Michael, "RNA Detection Technology for Applications in Marine Science: Microbes to Fish" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5321 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. RNA Detection Technology for Applications in Marine Science: Microbes to Fish by Robert M. Ulrich A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy College of Marine Science University of South Florida Major Professor: John H. Paul, Ph.D. Valerie J. Harwood, Ph.D. Mya Breitbart, Ph.D. Christopher D. Stallings, Ph.D. David E. John, Ph.D. Date of Approval June 25, 2014 Keywords: NASBA, grouper, Karenia mikimotoi, Enterococcus Copyright © 2014, Robert M. Ulrich DEDICATION This dissertation is dedicated to my fiancée, Dr. Shannon McQuaig for inspiring my return to graduate school and her continued support over the last four years. On no other porch in our little town have there been more impactful scientific discussions, nor more words of encouragement. ACKNOWLEDGMENTS I gratefully acknowledge the many people who have encouraged and advised me throughout my graduate studies. -
Download Book (PDF)
e · ~ e t · aI ' A Field Guide to Grouper and Snapper Fishes of Andaman and Nicobar Islands (Family: SERRANIDAE, Subfamily: EPINEPHELINAE and Family: LUTJANIDAE) P. T. RAJAN Andaman & Nicobar Regional Station Zoological Survey of India Haddo, Port Blair - 744102 Edited by the Director, Zoological Survey of India, Kolkata Zoological Survey of India Kolkata CITATION Rajan, P. T. 2001. Afield guide to Grouper and Snapper Fishes of Andaman and Nicobar Islands. (Published - Director, Z.5.1.) Published : December, 2001 ISBN 81-85874-40-9 Front cover: Roving Coral Grouper (Plectropomus pessuliferus) Back cover : A School of Blue banded Snapper (Lutjanus lcasmira) © Government of India, 2001 ALL RIGHTS RESERVED • No part of this publication may be reproduced, stored in a retrieval system or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise without the prior permission of the publisher. • This book is sold subject to the condition that it shall not, by way of trade, be lent, re-sold, hired out or otherwise disposed of without the publisher'S consent, in any form of binding or cover other than that in which it is published. • The correct price of this publication is the price printed on this page. Any revised price indicated by a rubber stamp or by a sticker or by any other means is incorrect and should be unacceptable. PRICE Indian Rs. 400.00 Foreign $ 25; £ 20 Published at the Publication Division by the Director, Zoological Survey of India, 234/4, AJe Bose Road, 2nd MSO Building, (13th Floor), Nizam Palace, Calcutta-700 020 after laser typesetting by Computech Graphics, Calcutta 700019 and printed at Power Printers, New Delhi - 110002. -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
Type Species, Perca Rogaa Forsskål, 1775, by Original Designation and Monotypy; Proposed As a Subgenus
click for previous page 16 FAO Species Catalogue Vol. 16 2.4 Information by genus and species Aethaloperca Fowler, 1904 SERRAN Aethal Aethafoperca Fowler, 1904:522; type species, Perca rogaa Forsskål, 1775, by original designation and monotypy; proposed as a subgenus. Synonyms: None. Species: A single species widely distributed in the Red Sea and Indo-West Pacific region. Remarks: The genus Aethaloperca is closely related to Cephalopholis and Gracila which also have IX dorsal-fin spines and several trisegmental pterygiophores in the dorsal and anal fin. Smith-Vaniz et al. (1988) discussed the relationships of these genera, and we agree with their decision to recognize Aethaloperca as a valid genus. It differs from Cephalopholis and Gracila in the configuration of the pectoral and median fins and in some cranial features (the anteriorly converging parietal crests and the well-developed median crest on the frontals that extends to the rear edge of the ethmoidal depression). Aethaloperca also differs from Gracila in the shape of the maxilla and in having a larger head and deeper body. Aethaloperca rogaa (Forsskål, 1775) Fig. 35; PI. IA SERRAN Aethal 1 Perca rogaa Forsskål, 1775:38 (type locality: Red Sea, Jeddah, Saudi Arabia). Synonyms: Perca lunaris Forsskål; 1775:39 (type locality: Al Hudaydah [Yemen] and Jeddah). Cephalo- pholis rogaa . FAO Names: En - Redmouth grouper; Fr - Vielle roga; Sp - Cherna roga. Fig. 35 Aethaloperca rogaa (4.50 mm total length) Diagnosis: Body deep and compressed, the depth greater than the head length and contained 2.1 to 2.4 times in standard length, the body width contained 2.3 to 2.8 times in the depth. -
The Trade in Live Reef Food Fish Volume 1
THE TRADE IN LIVE REEF FOOD FISH GOING GOING GONE VOLUME 1 MAIN REPORT Acknowledgements This report was prepared by ADM Capital Foundation and the University of Hong Kong. We would like to thank Sam Inglis, Lisa Genasci, Jane Chu, Kathleen Ho and and Ellie Appleby for their diligence in reading and editing; Doug Woodring, who drove the initial concept; and DESIGNORM for their innovative and informative graphics. Rachel Wong helped to compile some of the data, and Liu Min, Joyce Wu and Felix Chan kindly provided data. We are grateful to the government staff of the Marine Department, the Agriculture, Fisheries and Conservation Department, the Fish Marketing Organization and the Customs and Excise Department for responding to our questions and clarifying issues raised, as well as reviewing an earlier draft, and to the many traders and participants of the trade who we interviewed. Disclaimer This document (the ‘Document’) has been prepared by ADM Capital Foundation (‘ADMCF’) for general introduction, overview and discussion purposes only and does not constitute definitive advice on regulatory, investment or legal issues. It should not be used as a substitute for taking regulatory, financial, tax or legal advice in any specific situation. Information provided in the report has been obtained from, or is based upon, sources believed to be reliable but have not been independently verified, and no guarantee, representation or warranty is made as to its accuracy or completeness. Information contained in this Document is current as of December 2017 and is subject to change without notice. Information contained in this Document relating to unrealised data and projections is indicative only, and has been based on unaudited, internal data and assumptions, which have not been independently verified and are subject to material corrections, verifications and amendments. -
PP-4. Monitoring of Fish Supply to Resorts and Setting up of an Ecolabel Certification
PP-4. Monitoring of Fish Supply to Resorts and Setting up of an Ecolabel Certification 1) Report on Survey on Reef Fish Landings to Tourist Resorts 2) Guidelines on Best Fishing and Fish Handling Practices 3) Overview of reef fish sampling in K. Dhiffushi – Nov-Dec 2016 REPORT ON SURVEY ON REEF FISH LANDINGS TO TOURIST RESORTS May 2016 Muawin YOOSUF, Ministry of Fisheries and Agriculture with the technical assistance of Bernard ADRIEN, MASPLAN This survey was carried out as part of a Pilot Project under the Project for the Formulation of Master Plan for Sustainable Fisheries (MASPLAN), a technical cooperation project of the Japan International Cooperation Agency (JICA). All pictures taken by Bernard Adrien. REPORT ON SURVEY ON REEF FISH LANDINGS TO RESORTS – MAY 2016 1 Table of Contents 1 INTRODUCTION .................................................................................................................................3 2 METHOD ..............................................................................................................................................4 3 RESULTS & ANALYSIS .....................................................................................................................5 3.1 Estimates on reef fish production ..................................................................................................5 Estimate of Annual Reef Fish Landings to Resorts from the present survey ................................5 Comparison on Annual Reef Fish Landings to Resorts with previous surveys ............................5 -
Valuable but Vulnerable: Over-Fishing and Under-Management Continue to Threaten Groupers So What Now?
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/339934856 Valuable but vulnerable: Over-fishing and under-management continue to threaten groupers so what now? Article in Marine Policy · June 2020 DOI: 10.1016/j.marpol.2020.103909 CITATIONS READS 15 845 17 authors, including: João Pedro Barreiros Alfonso Aguilar-Perera University of the Azores - Faculty of Agrarian and Environmental Sciences Universidad Autónoma de Yucatán -México 215 PUBLICATIONS 2,177 CITATIONS 94 PUBLICATIONS 1,085 CITATIONS SEE PROFILE SEE PROFILE Pedro Afonso Brad E. Erisman IMAR Institute of Marine Research / OKEANOS NOAA / NMFS Southwest Fisheries Science Center 152 PUBLICATIONS 2,700 CITATIONS 170 PUBLICATIONS 2,569 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Comparative assessments of vocalizations in Indo-Pacific groupers View project Study on the reef fishes of the south India View project All content following this page was uploaded by Matthew Thomas Craig on 25 March 2020. The user has requested enhancement of the downloaded file. Marine Policy 116 (2020) 103909 Contents lists available at ScienceDirect Marine Policy journal homepage: http://www.elsevier.com/locate/marpol Full length article Valuable but vulnerable: Over-fishing and under-management continue to threaten groupers so what now? Yvonne J. Sadovy de Mitcheson a,b, Christi Linardich c, Joao~ Pedro Barreiros d, Gina M. Ralph c, Alfonso Aguilar-Perera e, Pedro Afonso f,g,h, Brad E. Erisman i, David A. Pollard j, Sean T. Fennessy k, Athila A. Bertoncini l,m, Rekha J. -
A Parasite of Deep-Sea Groupers (Serranidae) Occurs Transatlantic
Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts ( Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic Amira Chaabane, Jean-Lou Justine, Delphine Gey, Micah Bakenhaster, Lassad Neifar To cite this version: Amira Chaabane, Jean-Lou Justine, Delphine Gey, Micah Bakenhaster, Lassad Neifar. Pseudorhab- dosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts ( Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic. PeerJ, PeerJ, 2016, 4, pp.e2233. 10.7717/peerj.2233. hal- 02557717 HAL Id: hal-02557717 https://hal.archives-ouvertes.fr/hal-02557717 Submitted on 16 Aug 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts (Hyporthodus spp.), -
Maldives Reef Survey Trip June 13-30Th 2008
Maldives Reef Survey - June 13-30th 2008 Jean-Luc Solandt, Biodiversity Policy Officer Chris Wood, Seasearch Co-ordinator Wolf Business Park Innovation House Alton Rd Boldero Rd Ross on Wye Bury St Edmunds HR9 5NB Suffolk IP32 7BS Tel: 01989 566 017 Tel: 01284 748010 Email:[email protected] Email: [email protected] Web: www.mcsuk.org Web: www.scubascuba.com 1. Introduction The Maldives archipelago lies in the heart of the Indian Ocean approximately 300nm SSW of the southern tip of India. The archipelago comprises approximately 1190 islands lying on a raised oceanic ridge, which is approximately 900km long, and straddles the equator between 00 45.00 0S (Addu atoll) to approximately 07 06.00 0N (Ihavandhippolhu atoll). The chain of atolls is relatively narrow (approximately 150km wide), with the capital Male situated in the centre of the archipelago at N 04 10.000; E 073 32.000. The reefs and islands of the Maldives are entirely comprised of raised reef limestone, built over thousands of years by billions of tiny corals laying down of calcium carbonate. There are 26 major atolls comprising a total of some 1190 islands – all entirely built by corals. Figure 1. Location of the Maldives in the central Indian Ocean (left), and Ari atoll (right) showing the variety of coral reefs found within any one atoll. (Maps by Steve Frampton) The structures these corals have created can broadly be divided into three geo- morphological features: i. Inner atoll reefs – (Thillas, Faros and Giris) Thillas are submerged reefs found in the middle of the atolls – which reach depths of around 80m in the largest lagoons, and rise to between 15 and 5m of the surface. -
Preliminary Assessment of the Live Reef Fish Trade in the Kudat Region: Final Technical Report
Preliminary Assessment of the Live reef fish trade in the Kudat region: Final Technical Report WWF Malaysia Project Report September 2002 Preliminary Assessment of the Live Reef Fish Trade in the Kudat Region By Tim Daw Leonardo Jeffery Daim Mohd. Asri Bin Ali Report Produced Under Project MYS 487/03 SSME-Conserving the Outstanding Biodiversity & Resources of the Sulu-Sulawesi Marine Ecoregion September 2002 2 Table of Contents Acknowledgements........................................................................................................ 5 Executive Summary ....................................................................................................... 6 1. Introduction................................................................................................................ 9 2. Aims ........................................................................................................................... 9 3. Study Sites ................................................................................................................. 9 4. Methods .................................................................................................................... 10 4.1 Surveys........................................................................................................... 10 4.2 Direct Observations ........................................................................................ 11 4.3 Secondary Data .............................................................................................. 11 -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Epinephelus Lanceolatus (Bloch, 1790)
230 Capture-based aquaculture: global overview Epinephelus lanceolatus (Bloch, 1790) FIGURE 19 Giant grouper (Epinephelus lanceolatus) FAO TABLE 10 Characteristics of the giant grouper, Epinephelus lanceolatus Common names: Giant grouper, Queensland grouper Size and age: 270 cm TL; max. published weight: 455.0 kg Environment: Reef-associated; brackish; marine; depth range 1–100 m Climate: Tropical; 28°N - 39°S, 24°E - 122°W Importance: Important in subsistence fisheries, commercial aquaculture, recreational gamefish. Cultured in Taiwan PC. In live reef fish markets. Juveniles sold in ornamental trade as “bumblebee grouper”. Resilience: Very low, minimum population doubling time more than 14 years. Biology and ecology: The largest bony fish found in coral reefs. Common in shallow waters. Found in caves or wrecks; also in estuaries, from shore and in harbours. Juveniles secretive in reefs and rarely seen. Feeds on spiny lobsters, fishes, including small sharks and batoids, and juvenile sea turtles and crustaceans. Nearly wiped out in heavily fished areas. Large individuals may be ciguatoxic. Source: Modified from FishBase (Froese and Pauly, 2007). FIGURE 20 Distribution of Epinephelus lanceolatus (FishBase, 2007) Capture-based aquaculture of groupers 231 Epinephelus malabaricus (Bloch and Schneider, 1801) FIGURE 21 Malabar grouper (Epinephelus malabaricus) IRST COURTESY COURTESY OF D. F TABLE 11 Characteristics of the Malabar grouper, Epinephelus malabaricus Common names: Malabar grouper, estuary grouper, green grouper Size and age: 234 cm TL; max. published weight: 150.0 kg Environment: Reef-associated; amphidromous; brackish; marine; depth range 0–150 m Climate: Tropical; 30°N - 32°S, 29°E - 173°W Importance: High value commercial and recreational fisheries and aquaculture.