Supporting Information for Proteomics DOI 10.1002/pmic.200400912

Mamoun Ahram, Joshua N. Adkins, Deanna L. Auberry, David S. Wunschel and David L. Springer

A proteomic approach to characterize shedding

ã 2004WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.de Supplementary Table I. A complete list of in control or PMA-treated HMEC media according to the identified peptides. Additional information on the charge state, Xcorr, DelCN, and the fraction(s) and the treatment groups from which a peptide was detected are included. The proteins are alphabetic ordered. Abbreviations: B, biotinylated and isolated by streptavidin-affinity column; G, glycosylated and isolated by lectin-affinity chromatography; C, crude preparation of media samples.

Reference Protein name Charge state XCorr DelCN Sequence Fraction DMSO PMA gi|1350681|sp|P36578 60S ribosomal protein L4 1 2.1873 0.117 K.AAAAAAALQAK.S C10 3 4.211 0.462 K.NNRQPYAVSELAGHQTSAESWGTGR.A C01 gi|14916999|sp|P11021 78 kDa glucose-regulated protein precursor 2 4.2028 0.285 K.IQQLVKEFFNGKEPSR.G C10 2 3.2933 0.177 K.KKELEEIVQPIISK.L C10 2 2.2155 0.175 K.NGRVEIIANDQGNR.I C10 2 2.8694 0.373 K.NQLTSNPENTVFDAK.R C10 2 2.5984 0.283 K.NQLTSNPENTVFDAKR.L C10 2 3.4465 0.441 K.NQLTSNPENTVFDAKR.L C10 1 1.9832 0.208 K.TFAPEEISAMVLTK.M C10 2 2.4235 0.303 K.VLEDSDLKKSDIDEIVLVGGSTRIPK. C 1 0 3 3.8488 0.251 K.VLEDSDLKKSDIDEIVLVGGSTRIPK. C 1 0 2 2.898 0.366 K.VTHAVVTVPAYFNDAQR.Q C10 2 2.788 0.276 N.SQIFSTASDNQPTVTIK.V C10 2 3.6276 0.472 N.SQIFSTASDNQPTVTIK.V C10 2 2.7777 0.45 R.AKFEELNMDLFR.S C01 2 3.1876 0.387 R.AKFEELNMDLFR.S C10 2 3.2802 0.453 R.AKFEELNMDLFR.S C10 2 3.5307 0.417 R.AKFEELNMDLFR.S C10 2 3.8261 0.341 R.AKFEELNMDLFR.S C10 1 3.2494 0.402 R.IINEPTAAAIAYGLDK.R C10 2 2.7512 0.457 R.IINEPTAAAIAYGLDKR.E C10 2 3.6004 0.439 R.IINEPTAAAIAYGLDKR.E C10 2 4.3915 0.486 R.IINEPTAAAIAYGLDKR.E C10 2 2.7999 0.481 R.QATKDAGTIAGLNVMR.I C10 gi|5453880|ref|NP_006296.1 Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A 2 2.2815 0.169 R.NRTPSDVKELVLDNSR.S C01 2 2.3917 0.207 R.NRTPSDVKELVLDNSR.S C01 2 2.6674 0.246 R.NRTPSDVKELVLDNSR.S C10 gi|4501867|ref|NP_001089.1 Aconitase 2 2 2.5214 0.148 W.DGKDLEDLQILIKVK.G C01 gi|1070613|pir||ATHUSM alpha 2, aortic smooth muscle 1 2.1143 0.251 K.SYELPDGQVITIGNER.F C10 2 2.8899 0.352 K.SYELPDGQVITIGNER.F C01 2 3.2773 0.36 K.SYELPDGQVITIGNER.F C01 2 3.7066 0.439 K.SYELPDGQVITIGNER.F C01 2 3.7183 0.452 K.SYELPDGQVITIGNER.F C10 2 3.7984 0.479 K.SYELPDGQVITIGNER.F C10 2 3.9701 0.422 K.SYELPDGQVITIGNER.F C10 2 4.0338 0.431 K.SYELPDGQVITIGNER.F C10 2 4.3507 0.506 K.SYELPDGQVITIGNER.F C01 2 2.9282 0.191 R.IDLAGRDLTDYLMK.I C10 2 2.4551 0.158 R.MQKEITALAPSTMK.I C01 2 2.6695 0.316 R.MQKEITALAPSTMK.I C01 gi|118276|sp|P07108 Acyl-CoA-binding protein 2 2.5358 0.288 K.QATVGDINTERPGMLDFTGK.A C01 2 2.6257 0.145 K.TKPSDEEMLFIYGHYK.Q C10 2 2.6641 0.172 K.TKPSDEEMLFIYGHYK.Q C01 gi|9951915|ref|NP_000678.1 Adenosylhomocysteinase 2 2.8195 0.27 R.KALDIAENEMPGLMR.M C10 2 3.988 0.426 R.KALDIAENEMPGLMR.M C01 2 4.8177 0.463 R.KALDIAENEMPGLMR.M C10 gi|22538387|ref|NP_005742.4 A-kinase anchor protein 9 isoform 2 2 2.2569 0.109 R.YEVQDFQENMH.T C01 gi|4502027|ref|NP_000468.1 Albumin precursor 1 2.1846 0.246 K.KVPQVSTPTLVEVSR.N C10 1 2.578 0.196 K.KVPQVSTPTLVEVSR.N C10 1 2.6619 0.408 K.KVPQVSTPTLVEVSR.N C10 1 2.7884 0.231 K.KVPQVSTPTLVEVSR.N C10 1 2.8801 0.344 K.KVPQVSTPTLVEVSR.N C01 1 3.1857 0.359 K.KVPQVSTPTLVEVSR.N C10 1 3.5062 0.313 K.KVPQVSTPTLVEVSR.N C10 2 2.2906 0.222 K.KVPQVSTPTLVEVSR.N C01 2 2.2988 0.202 K.KVPQVSTPTLVEVSR.N C01 2 2.3309 0.365 K.KVPQVSTPTLVEVSR.N C10 2 2.3602 0.355 K.KVPQVSTPTLVEVSR.N C10 2 2.4811 0.34 K.KVPQVSTPTLVEVSR.N C10 2 2.5346 0.329 K.KVPQVSTPTLVEVSR.N C10 2 2.5444 0.317 K.KVPQVSTPTLVEVSR.N C10 2 2.591 0.31 K.KVPQVSTPTLVEVSR.N C01 2 2.5928 0.246 K.KVPQVSTPTLVEVSR.N C10 2 2.682 0.279 K.KVPQVSTPTLVEVSR.N C01 2 2.8259 0.321 K.KVPQVSTPTLVEVSR.N C10 2 2.8298 0.328 K.KVPQVSTPTLVEVSR.N C10 2 2.8485 0.326 K.KVPQVSTPTLVEVSR.N C10 2 2.9332 0.261 K.KVPQVSTPTLVEVSR.N C10 2 2.9713 0.25 K.KVPQVSTPTLVEVSR.N C01 2 3.0645 0.252 K.KVPQVSTPTLVEVSR.N C01 2 3.1583 0.356 K.KVPQVSTPTLVEVSR.N C10 2 3.3248 0.271 K.KVPQVSTPTLVEVSR.N C01 1 2.2972 0.291 K.VPQVSTPTLVEVSR.N C10 1 2.3208 0.411 K.VPQVSTPTLVEVSR.N C01 2 2.616 0.261 K.VPQVSTPTLVEVSR.N C10 2 2.7693 0.286 K.VPQVSTPTLVEVSR.N C10 2 2.8523 0.306 K.VPQVSTPTLVEVSR.N C01 2 3.0627 0.402 K.VPQVSTPTLVEVSR.N C01 2 3.3849 0.407 K.VPQVSTPTLVEVSR.N C10 2 2.4879 0.401 V.PQVSTPTLVEVSR.N C10 2 2.8289 0.332 V.PQVSTPTLVEVSR.N C10 2 2.9082 0.335 V.PQVSTPTLVEVSR.N C10 2 2.9132 0.242 V.PQVSTPTLVEVSR.N C01 2 3.1194 0.375 V.PQVSTPTLVEVSR.N C01 2 3.2975 0.398 V.PQVSTPTLVEVSR.N C10 gi|229674|pdb|1ALD Aldolase A 2 2.3049 0.11 R.IVAPGKGILAADESTGSIAK.R C10 2 3.4893 0.469 R.IVAPGKGILAADESTGSIAK.R C10 2 3.5948 0.483 R.IVAPGKGILAADESTGSIAK.R C10 gi|28549|emb|CAA23749.1 Alpha globin 2 2.3599 0.21 K.VGAHAGEYGAEALER.H C10 2 2.6017 0.157 K.VGAHAGEYGAEALER.H C01 gi|112959|sp|P12814 Alpha- 1 1 2.1154 0.141 K.ALDFIASK.G C10 2 2.5161 0.29 L.PPDQAEYCIAR.M C10 gi|178540|gb|AAA51722.1 Amyloid-beta protein precursor 2 4.4992 0.399 K.AVIQHFQEKVESLEQEAANER.Q C01 gi|86836|pir||A34721 Androgen receptor A - human [MASS=98402] 2 3.3654 0.159 G.PCGGGGGGGGGGGGGGGGEAGAVAP.Y C 1 0 2 3.7091 0.12 G.PCGGGGGGGGGGGGGGGGEAGAVAP.Y C 1 0 2 3.9522 0.17 G.PCGGGGGGGGGGGGGGGGEAGAVAP.Y C 1 0 gi|17391477|gb|AAH18671.1 Annexin 5 2 2.8926 0.316 K.GLGTDEESILTLLTSR.S C10 gi|4757756|ref|NP_004030.1 Annexin A2 2 2.9173 0.296 K.TDLEKDIISDTSGDFRK.L C01 2 4.0372 0.455 K.TDLEKDIISDTSGDFRK.L C10 2 2.5653 0.295 K.TKGVDEVTIVNILTNR.S C01 2 2.2479 0.233 R.AEDGSVIDYELIDQDAR.D C01 2 3.568 0.342 R.RAEDGSVIDYELIDQDAR.D C01 gi|4502101|ref|NP_000691.1 Annexin I 2 2.9061 0.295 K.QAWFIENEEQEYVQTVK.S C01 2 3.6748 0.342 K.QAWFIENEEQEYVQTVK.S C01 gi|4502113|ref|NP_001621.1 Annexin VIII 2 3.2756 0.287 K.SSSHFNPDPDAETLYK.A C10 gi|4502153|ref|NP_000375.1 Apolipoprotein B precursor 2 2.6367 0.135 R.INDVLEHVKHFVINL.I C01 gi|4557227|ref|NP_001077.1 Arylacetamide deacetylase 2 2.8886 0.131 R.AAPLLADDNK.L C10 2 2.3 0.194 R.AAPLLADDNKLR.G C10 2 2.5013 0.197 R.AAPLLADDNKLR.G C10 2 2.5162 0.186 R.AAPLLADDNKLR.G C10 2 2.7468 0.28 R.AAPLLADDNKLR.G C10 2 2.8273 0.253 R.AAPLLADDNKLR.G C10 gi|12643539|sp|O14525 Astrotactin 1 2 2.699 0.111 K.SITVSALPFLRENDLSIMHS.P G01 gi|13623199|gb|AAH06195.1 ATP citrate lyase, isoform 1 2 2.5392 0.18 R.SGGMSNELNNIISR.T C01 gi|4826838|ref|NP_004987.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 2 3.1009 0.125 I.KLMNEILNGIKVLKL.Y C10 2 3.2736 0.115 I.KLMNEILNGIKVLKL.Y C01 2 3.3034 0.133 I.KLMNEILNGIKVLKL.Y C10 2 3.347 0.102 I.KLMNEILNGIKVLKL.Y C10 2 3.4647 0.151 I.KLMNEILNGIKVLKL.Y C10 2 3.7053 0.111 I.KLMNEILNGIKVLKL.Y C10 gi|437367|gb|AAA64927.1 Autoantigen p69 2 2.2728 0.124 K.DVSQELDPDLYKQ.M C10 gi|4501885|ref|NP_001092.1 Beta actin 2 2.8537 0.221 R.GYSFTTTAEREIVR.D C10 2 2.8985 0.314 R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L C01 2 3.6648 0.431 R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L C10 2 2.3043 0.212 R.VAPEEHPVLLTEAPLNPK.A C10 2 2.3807 0.336 R.VAPEEHPVLLTEAPLNPK.A C01 2 2.3871 0.251 R.VAPEEHPVLLTEAPLNPK.A C10 2 2.8786 0.366 R.VAPEEHPVLLTEAPLNPK.A C10 2 2.9729 0.299 R.VAPEEHPVLLTEAPLNPK.A C01 2 3.7289 0.443 R.VAPEEHPVLLTEAPLNPK.A C10 gi|6686256|sp|P80723 Brain acid soluble protein 1 2 2.4857 0.365 K.AQGPAASAEEPKPVEAPAANSDQTVTVKE.- C10 2 3.1211 0.24 K.AQGPAASAEEPKPVEAPAANSDQTVTVKE.- C10 2 3.399 0.375 K.AQGPAASAEEPKPVEAPAANSDQTVTVKE.- C01 gi|284018|pir||A45290 Calcium channel protein type L 2 2.2751 0.132 E.QATKADGANALGGK.G B10 gi|4502549|ref|NP_001734.1 Calmodulin 2 2 2.3406 0.277 D.GDGQVNYEEFVQMMTAK.- C10 2 2.5658 0.118 I.NEVDADGNGTIDFPEFLTMMAR.K C10 2 2.3383 0.414 K.EAFSLFDKDGDGTITTK.E C10 2 2.4862 0.282 K.EAFSLFDKDGDGTITTK.E C10 2 2.6417 0.233 K.EAFSLFDKDGDGTITTK.E C01 2 2.7908 0.281 K.EAFSLFDKDGDGTITTK.E C10 2 3.49 0.397 K.EAFSLFDKDGDGTITTK.E C01 2 4.1756 0.436 K.EAFSLFDKDGDGTITTK.E C01 2 2.2047 0.19 K.EAFSLFDKDGDGTITTKELGTVMR.S C01 2 3.4307 0.494 L.TEEQIAEFKEAFSLFDKDGDGTITTK.E C10 2 3.663 0.532 L.TEEQIAEFKEAFSLFDKDGDGTITTK.E C10 2 4.0664 0.459 L.TEEQIAEFKEAFSLFDKDGDGTITTK.E C10 2 4.4668 0.513 L.TEEQIAEFKEAFSLFDKDGDGTITTK.E C01 2 2.8084 0.248 R.EADIDGDGQVNYEEFVQMMTAK.- B01 2 3.4847 0.388 R.EADIDGDGQVNYEEFVQMMTAK.- B10 2 3.4847 0.427 R.EADIDGDGQVNYEEFVQMMTAK.- B10 2 3.8726 0.349 R.EADIDGDGQVNYEEFVQMMTAK.- B10 2 3.8726 0.455 R.EADIDGDGQVNYEEFVQMMTAK.- B10 2 3.1722 0.394 R.EADIDGDGQVNYEEFVQMMTAK.- C01 2 4.1122 0.503 R.EADIDGDGQVNYEEFVQMMTAK.- C01 2 4.8194 0.451 R.EADIDGDGQVNYEEFVQMMTAK.- C01 2 3.5109 0.385 R.VFDKDGNGYISAAELR.H B01 2 3.5109 0.436 R.VFDKDGNGYISAAELR.H B01 2 2.901 0.417 R.VFDKDGNGYISAAELR.H C10 2 3.4978 0.405 R.VFDKDGNGYISAAELR.H C01 2 3.5032 0.284 R.VFDKDGNGYISAAELR.H C01 2 3.7196 0.382 R.VFDKDGNGYISAAELR.H C10 2 3.7248 0.393 R.VFDKDGNGYISAAELR.H C01 2 4.1421 0.535 R.VFDKDGNGYISAAELR.H C10 2 4.4414 0.463 R.VFDKDGNGYISAAELR.H C01 2 4.5432 0.426 R.VFDKDGNGYISAAELR.H C10 2 4.6754 0.527 R.VFDKDGNGYISAAELR.H C10 2 4.6806 0.495 R.VFDKDGNGYISAAELR.H C10 2 4.6914 0.518 R.VFDKDGNGYISAAELR.H C01 2 2.3001 0.188 T.EEQIAEFKEAFSLFDKDGDGTITTK.E C01 2 2.6865 0.309 T.EEQIAEFKEAFSLFDKDGDGTITTK.E C10 2 2.8006 0.358 T.EEQIAEFKEAFSLFDKDGDGTITTK.E C10 gi|1352419|sp|P20810 Calpain inhibitor 2 2.4382 0.332 K.GTVPDDAVEALADSLGKK.E C01 2 3.4618 0.324 R.KVEKDTMSDQALEALSASLGTR.Q C01 2 4.2436 0.402 R.KVEKDTMSDQALEALSASLGTR.Q C01 gi|4757900|ref|NP_004334.1 Calreticulin precursor 2 2.4361 0.215 A.EPAVYFKEQFLDGDGWTSR.W C01 2 2.9777 0.431 A.EPAVYFKEQFLDGDGWTSR.W C10 2 3.1364 0.412 K.IKDPDASKPEDWDER.A C10 2 2.8882 0.307 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A B10 2 2.8882 0.351 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A B10 2 2.2598 0.243 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C10 2 2.4839 0.103 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C01 2 2.8279 0.349 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C01 2 2.8581 0.353 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C10 2 3.2493 0.4 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C10 2 3.343 0.369 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C01 2 3.4656 0.415 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C10 2 3.5193 0.386 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C01 2 4.5482 0.449 K.SGTIFDNFLITNDEAYAEEFGNETWGVTK.A C10 3 4.6642 0.355 K.IVSKIDGDKDGFVTVDELKDWIK.F C10 3 5.2253 0.466 K.IVSKIDGDKDGFVTVDELKDWIK.F C01 2 3.1424 0.372 K.MDKEETKDWILPSDYDHAEAEAR.H C01 2 3.6786 0.272 K.MDKEETKDWILPSDYDHAEAEAR.H C10 gi|37622885|ref|NP_003860.2 Carboxylesterase 2 isoform 1 2 3.0942 0.128 F.WKKALPQKIQELEEPEERHTE.L B10 gi|2134870|pir||S70579 Carnitine O-palmitoyltransferase 2 3.1963 0.226 Y.RMELLAKEFQDKTAPR.L C10 2 3.2641 0.173 Y.RMELLAKEFQDKTAPR.L C01 gi|4503143|ref|NP_001900.1 Cathepsin D preproprotein 2 2.409 0.103 R.RTMSEVGGSVEDLIAKG.P G01 gi|105583|pir||S13530 CD44E protein 2 2.5676 0.316 R.YGFIEGHVVIPR.I C01 2 3.5244 0.418 R.YGFIEGHVVIPR.I C01 gi|4557447|ref|NP_001261.1 Chromodomain helicase DNA binding protein 1 2 3.0887 0.1 T.GATTTIYAVEADGDPNAGFEKN.K G01 gi|542785|pir||S41044 Chromosomal protein 2 2.3796 0.184 K.NNIRIILFLPQAHGRD.F C01 gi|6005995|ref|NP_009028.1 Clathrin, light polypeptide B (Lcb) isoform b 2 2.3327 0.1 R.LQELDAASKVTEQEWREK.A C01 2 3.1477 0.257 V.ASEEAFVKESKEETPGTEWEK.V C10 gi|126792|sp|P22712 C-myc promoter-binding protein 2 3.1308 0.376 K.YNQLLRIEEELGSK.A C01 2 3.6802 0.366 K.YNQLLRIEEELGSK.A C10 2 3.9305 0.27 K.YNQLLRIEEELGSK.A C10 2 4.3412 0.37 K.YNQLLRIEEELGSK.A C01 2 4.4355 0.289 K.YNQLLRIEEELGSK.A C01 2 4.6884 0.332 K.YNQLLRIEEELGSK.A C10 2 3.372 0.291 K.YNQLLRIEEELGSKAK.F C10 2 3.0272 0.326 R.LAKYNQLLRIEEELGSK.A C10 2 3.2567 0.113 R.LAKYNQLLRIEEELGSK.A C01 1 2.4768 0.323 R.YISPDQLADLYK.S C10 gi|5031635|ref|NP_005498.1 Cofilin 1 1 2.027 0.17 K.LGGSAVISLEGKPL.- C01 2 3.5487 0.439 K.NIILEEGKEILVGDVGQTVDDPYATFVK.M C10 2 3.6109 0.501 K.NIILEEGKEILVGDVGQTVDDPYATFVK.M C01 2 4.2089 0.29 K.NIILEEGKEILVGDVGQTVDDPYATFVK.M C10 1 2.1779 0.425 R.YALYDATYETK.E C10 1 2.388 0.291 R.YALYDATYETK.E C01 1 2.4371 0.222 R.YALYDATYETK.E C01 gi|115349|sp|P08572 Collagen alpha 2(IV) chain precursor 2 2.2643 0.201 K.GDPGQHGLPGFPGLK.G B01 gi|19482174|ref|NP_003582.2 Cullin 2 2 3.3959 0.111 K.FNNFIKNQDTVIDLGISFQ.I B10 gi|543959|sp|P35520 Cystathionine beta-synthase 2 2.4192 0.238 I.TCGHTIEILR.E C10 2 2.6116 0.305 I.TCGHTIEILR.E C10 gi|4503117|ref|NP_000091.1 Cystatin B 1 1.9295 0.232 K.VHVGDEDFVHLR.V C10 2 3.4103 0.369 R.VFQSLPHENKPLTLSNYQTNK.A C10 1 1.9725 0.4 R.ALDFAVGEYNK.A C10 1 2.0777 0.435 R.ALDFAVGEYNK.A C01 2 2.2475 0.128 R.LVGGPMDASVEEEGVRR.A C10 gi|4503233|ref|NP_000756.1 Cytochrome P450, subfamily IIIA, polypeptide 7 2 2.4399 0.14 P.KGVVVMIPSYVLHHDPK.Y C10 2 2.7222 0.149 P.KGVVVMIPSYVLHHDPK.Y C10 gi|30354567|gb|AAH51764.1 Damage-specific DNA binding protein 1 2 2.4537 0.237 R.EATADDLIKVVEELTR.I C10 gi|17375506|sp|Q15054 DNA polymerase delta subunit 3 2 2.2399 0.122 G.NMMSNFFGKAAMNKFK.V C01 gi|7661598|ref|NP_056350.1 DNA polymerase-transactivated protein 6 2 2.5316 0.123 K.RLTNLASQMAEMQLAELRAEIK.H C01 gi|2135011|pir||I53354 DNA-binding protein A 2 2.6228 0.383 R.SVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSR.Y C01 gi|1082338|pir||S48061 DNA-directed DNA polymerase beta 2 2.6557 0.136 K.KLPGVGTKIAEKIDEFLATGK.L G01 gi|7512400|pir||T08851 Down syndrome cell adhesion protein 1 2 3.4044 0.106 I.NSYGEDRGIIQLTVQEPPDP.P G01 gi|6457342|gb|AAF09483.1 E2IG4 2 2.3958 0.216 R.YLSLDGNPLAVIGPGAFAG.L C10 gi|4757960|ref|NP_004351.1 E-cadherin 2 2.8552 0.303 K.VFYSITGQGADTPPVGVFIIER.E B01 gi|13626550|sp|Q9UNN8 Endothelial cell protein C/activated protein C recepto 2 2.285 0.189 R.TQSGLQSYLLQFHGLVR.L B01 2 2.4798 0.248 R.TQSGLQSYLLQFHGLVR.L B10 2 2.4798 0.321 R.TQSGLQSYLLQFHGLVR.L B10 2 2.6253 0.157 R.TQSGLQSYLLQFHGLVR.L B01 2 2.6253 0.166 R.TQSGLQSYLLQFHGLVR.L B01 gi|4503571|ref|NP_001419.1 Enolase 1 2 2.7432 0.342 K.AVEHINKTIAPALVSK.K C10 2 3.1382 0.371 K.AVEHINKTIAPALVSK.K C01 2 3.6102 0.458 K.AVEHINKTIAPALVSK.K C10 2 3.9402 0.421 K.AVEHINKTIAPALVSK.K C10 2 3.9677 0.416 K.AVEHINKTIAPALVSK.K C01 2 4.0994 0.442 K.AVEHINKTIAPALVSK.K C10 2 2.7956 0.246 K.KLNVTEQEKIDK.L C10 2 2.3373 0.302 K.LAMQEFMILPVGAANFR.E C10 2 2.2693 0.209 K.LNVTEQEKIDKLMIEMDGTENK.S C10 2 2.24 0.13 K.SFIKDYPVVSIEDPFDQDDWGAWQK.F C10 2 2.5381 0.308 K.SFIKDYPVVSIEDPFDQDDWGAWQK.F C01 2 3.4061 0.322 K.SFIKDYPVVSIEDPFDQDDWGAWQK.F C10 2 3.5052 0.435 K.SFIKDYPVVSIEDPFDQDDWGAWQK.F C10 2 3.9519 0.271 K.SFIKDYPVVSIEDPFDQDDWGAWQK.F C10 2 3.8114 0.514 K.YGKDATNVGDEGGFAPNILENKEGLELLK.T C10 3 3.9158 0.109 R.EIFDSRGNPTVEVDLFTSKGLFR.A C10 3 4.015 0.265 R.EIFDSRGNPTVEVDLFTSKGLFR.A C10 1 2.0765 0.401 R.GNPTVEVDLFTSK.G C10 1 2.65 0.408 R.GNPTVEVDLFTSK.G C10 2 3.5097 0.309 R.HIADLAGNSEVILPVPAFNVINGGSHAGNK.L C10 2 3.513 0.202 R.HIADLAGNSEVILPVPAFNVINGGSHAGNK.L C10 2 2.9635 0.373 R.SGKYDLDFKSPDDPSR.Y C01 2 3.7331 0.398 R.SGKYDLDFKSPDDPSR.Y C01 2 3.7807 0.407 R.SGKYDLDFKSPDDPSR.Y C10 2 4.127 0.39 R.SGKYDLDFKSPDDPSR.Y C10 2 4.2358 0.367 R.SGKYDLDFKSPDDPSR.Y C10 2 3.038 0.261 R.SGKYDLDFKSPDDPSRYISPDQLADLYK.S C10 gi|4503487|ref|NP_001953.1 Ephrin-A5 precursor 2 2.73 0.229 R.VFDVNDKVENSLEPADDTVHESAEP.S C01 gi|2811086|sp|P00533 Epidermal growth factor receptor precursor 2 2.5239 0.296 K.GSHQISLDNPDYQQDFFPK.E C01 gi|4261795|gb|AAD14095.1 Eukaryotic initiation factor 5A 1 2.3275 0.485 K.VHLVGIDIFTGK.K C01 1 2.8442 0.471 K.VHLVGIDIFTGK.K C10 gi|4503477|ref|NP_001950.1 Eukaryotic translation elongation factor 1 beta 2 1 1.9705 0.193 R.SIQADGLVWGSSK.L C10 1 2.3369 0.378 R.SIQADGLVWGSSK.L C01 gi|4503545|ref|NP_001961.1 Eukaryotic translation initiation factor 5A 2 2.4597 0.305 R.NDFQLIGIQDGYLSLLQDSGEVR.E C01 gi|1346031|sp|P14324 Farnesyl pyrophosphate synthetase 2 2.8221 0.13 R.VLTEDEMGHPEIGDAIAR.L C10 2 2.8525 0.348 R.VLTEDEMGHPEIGDAIAR.L C10 gi|4503725|ref|NP_000792.1 FK506-binding protein 1A 1 2.1619 0.38 -.GVQVETISPGDGR.T C 0 1 gi|388374|gb|AAB27059.1 Flvi-2/bmi-1 2 2.3479 0.167 R.KFLRSKMDIPNTFQIDVMYEEEPLK.D B01 gi|4758398|ref|NP_004467.1 Folate hydrolase 2 2.449 0.126 D.PSKAWGEVK.R C10 gi|2146952|pir||I39435 Fructose-bisphosphate aldolase 1 1.9273 0.27 R.ALQASALK.A C10 2 2.9884 0.331 K.GFGFVDFNSEEDAK.- B10 2 2.9884 0.338 K.GFGFVDFNSEEDAK.- B10 2 3.2744 0.223 K.GFGFVDFNSEEDAK.- B10 2 3.378 0.298 K.GFGFVDFNSEEDAK.- B01 2 3.378 0.378 K.GFGFVDFNSEEDAK.- B01 2 3.3909 0.334 K.GFGFVDFNSEEDAK.- B01 2 3.3909 0.361 K.GFGFVDFNSEEDAK.- B01 gi|116176|sp|P14635 G2/mitotic-specific cyclin B1 2 2.3062 0.106 P.EPEPEPEPVK.E C01 2 2.8787 0.126 P.EPEPEPEPVK.E C01 gi|119347|sp|P09104 Gamma enolase 2 3.3828 0.392 V.PAFNVINGGSHAGNK.L C10 gi|2135211|pir||I52825 MAC25 protein 2 2.641 0.34 R.TELLPGDRDNLAIQTR.G C01 gi|4504087|ref|NP_000166.1 Glucose phosphate isomerase 2 3.1656 0.339 K.KIEPELDGSAQVTSHDASTNGLINFIK.Q C10 2 3.2922 0.348 R.MFNGEKINYTEGR.A C10 gi|726098|gb|AAC13869.1 Glutathione S-transferase-P1c 2 3.195 0.455 K.FQDGDLTLYQSNTILR.H C01 2 3.4235 0.381 R.MLLADQGQSWKEEVVTVETWQEGSLK.A C10 gi|7669492|ref|NP_002037.2 Glyceraldehyde 3-phosphate dehydrogenase 1 2.2044 0.356 K.AGAHLQGGAK.R C01 2 3.3457 0.403 K.IKWGDAGAEYVVESTGVFTTMEK.A C01 2 3.9138 0.442 K.IKWGDAGAEYVVESTGVFTTMEK.A C10 2 5.1322 0.432 K.IKWGDAGAEYVVESTGVFTTMEK.A C10 2 2.8001 0.256 K.LISWYDNEFGYSNR.V C10 2 2.5597 0.22 K.TVDGPSGKLWR.D C01 2 2.5258 0.21 K.VIHDNFGIVEGLMTTVHAITATQK.T C10 2 2.9252 0.221 K.VIHDNFGIVEGLMTTVHAITATQK.T C10 2 2.9712 0.371 K.VIHDNFGIVEGLMTTVHAITATQK.T C01 3 5.0735 0.454 K.VIHDNFGIVEGLMTTVHAITATQK.T C10 3 5.3319 0.48 K.VIHDNFGIVEGLMTTVHAITATQK.T C10 2 5.0514 0.557 K.WGDAGAEYVVESTGVFTTMEK.A C10 2 2.2516 0.432 R.DGRGALQNIIPASTGAAK.A C01 2 3.4237 0.402 R.DGRGALQNIIPASTGAAK.A C10 2 3.8508 0.358 R.DGRGALQNIIPASTGAAK.A C01 2 4.1136 0.424 R.DGRGALQNIIPASTGAAK.A C10 2 4.1512 0.475 R.DGRGALQNIIPASTGAAK.A C01 2 4.5336 0.391 R.DGRGALQNIIPASTGAAK.A C10 2 3.1641 0.418 R.VVDLMAHMASKE.- C01 gi|120643|sp|P00354 Glyceraldehyde 3-phosphate dehydrogenase, muscle 1 2.1657 0.334 K.AGAHLKGGAK.R C10 1 2.4805 0.337 K.AGAHLKGGAK.R C10 gi|4504523|ref|NP_002148.1 heat shock 10kD protein 1 1 1.9461 0.327 K.VLQATVVAVGSGSK.G C10 gi|662841|gb|AAA62175.1 Heat shock 27 kDa protein 2 3.125 0.329 K.LATQSNEITIPVTFESR.A C10 gi|1346317|sp|P48741 Heat shock 70 kDa protein 7 2 2.5431 0.237 T.PSYVAFTDTER.L C10 gi|5729877|ref|NP_006588.1 Heat shock 70kD protein 10 2 2.8232 0.277 K.NQVAMNPTNTVFDAKR.L C01 2 3.0291 0.307 K.NQVAMNPTNTVFDAKR.L C01 2 3.4773 0.506 K.NQVAMNPTNTVFDAKR.L C10 2 2.2169 0.382 R.QATKDAGTIAGLNVLR.I C10 2 2.8458 0.363 R.QATKDAGTIAGLNVLR.I C01 gi|1708307|sp|P54652 Heat shock-related 70 kDa protein 2 2 3.5006 0.339 K.STAGDTHLGGEDFDNR.M C01 2 4.2227 0.447 K.STAGDTHLGGEDFDNR.M C10 2 3.6755 0.357 R.ARFEELNADLFR.G C10 2 2.9538 0.354 R.IINEPTAAAIAYGLDKK.G C10 2 3.0282 0.338 R.IINEPTAAAIAYGLDKK.G C01 2 4.0458 0.433 R.IINEPTAAAIAYGLDKK.G C10 gi|4826754|ref|NP_005121.1 Heparin-binding growth factor binding protein 2 2.9791 0.259 K.VVSEQKDTLGNTQIK.Q C10 2 3.113 0.26 K.VVSEQKDTLGNTQIK.Q C01 gi|4758516|ref|NP_004485.1 Hepatoma-derived growth factor 2 3.1791 0.374 K.EAENPEGEEKEAATLEVERPLPMEVEK.N C10 2 3.5811 0.322 K.EAENPEGEEKEAATLEVERPLPMEVEK.N C01 1 2.1281 0.189 K.GFSEGLWEIENNPTVK.A C01 2 3.29 0.39 K.GFSEGLWEIENNPTVK.A C10 2 2.5813 0.28 K.STANKYQVFFFGTHETAFLGPK.D C01 2 2.9162 0.342 K.STANKYQVFFFGTHETAFLGPK.D C01 2 2.8673 0.376 K.YQVFFFGTHETAFLGPK.D C01 2 3.221 0.237 K.YQVFFFGTHETAFLGPK.D C01 2 3.8826 0.278 R.KGFSEGLWEIENNPTVK.A C01 2 4.2981 0.355 R.KGFSEGLWEIENNPTVK.A C10 2 5.0531 0.414 R.KGFSEGLWEIENNPTVK.A C01 gi|133254|sp|P09651 Heterogeneous nuclear ribonucleoprotein A1 2 2.9039 0.437 K.LFIGGLSFETTDESLR.S C01 gi|14165439|ref|NP_002131.2 Heterogeneous nuclear ribonucleoprotein K 2 2.207 0.124 R.GSYGDLGGPIITTQVTIPKDLAGSIIGK.G C10 3 3.9806 0.257 R.HESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK.Q C01 3 4.3775 0.391 R.HESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVK.Q C10 gi|133257|sp|P22626|ROA2 Heterogeneous nuclear ribonucleoproteins A2/B1 2 2.3794 0.259 K.ALSRQEMQEVQSSR.S C10 2 2.4067 0.182 K.ALSRQEMQEVQSSR.S C10 2 2.8245 0.209 K.ALSRQEMQEVQSSR.S C01 2 2.9291 0.261 K.ALSRQEMQEVQSSR.S C10 2 3.4188 0.393 K.ALSRQEMQEVQSSR.S C01 2 3.5318 0.231 K.ALSRQEMQEVQSSR.S C10 2 3.5772 0.425 K.ALSRQEMQEVQSSR.S C01 2 3.6903 0.251 K.ALSRQEMQEVQSSR.S C01 2 4.1535 0.312 K.ALSRQEMQEVQSSR.S C10 2 2.9418 0.342 R.GFGDGYNGYGGGPGGGNFGGSPGYGGGR.G C 1 0 2 3.0242 0.359 R.GFGFVTFDDHDPVDKIVLQK.Y C01 2 2.5057 0.172 R.KALSRQEMQEVQSSR.S C10 2 3.4206 0.532 R.NMGGPYGGGNYGPGGSGGSGGYGGR.S C 1 0 2 2.5654 0.331 R.SGRGGNFGFGDSR.G C 0 1 2 2.6146 0.321 R.SGRGGNFGFGDSR.G C 1 0 gi|123374|sp|P26583|HMG2 High mobility group protein 2 2 3.5886 0.407 K.LKEKYEKDIAAYR.A C01 2 4.4216 0.395 K.LKEKYEKDIAAYR.A C10 gi|4504425|ref|NP_002119.1 High-mobility group protein 1 1 2.1097 0.284 K.IKGEHPGLSIGDVAK.K C01 1 2.4536 0.378 K.IKGEHPGLSIGDVAK.K C10 2 2.308 0.242 K.IKGEHPGLSIGDVAK.K C10 2 3.4817 0.436 K.IKGEHPGLSIGDVAK.K C10 2 3.7298 0.472 K.IKGEHPGLSIGDVAK.K C01 gi|1168210|sp|P10314 HLA class I histocompatibility antigen, A-32 alpha chain precursor 2 2.4948 0.117 V.LFGAMFAGAVVAAVR.W C10 gi|20141538|sp|P31275 Homeobox protein Hox-C12 2 2.6042 0.113 E.LEGEFLVNEFITR.Q C10 gi|7512559|pir||T12518 Hypothetical protein DKFZp434D193.1 1 2.222 0.169 K.ENTMQESLPSGIVNFR.E C10 gi|125758|sp|P01594 Ig kappa chain V-I region AU 2 2.3325 0.153 A.TYYCQQYDYLPWTFGQGTKVEIKR.- C01 gi|298878|gb|AAB25950.1 Immunoglobulin production stimulating factor-II beta 2 3.5823 0.383 -.DATNVGDEGGFAPNILENKEGLELLK.- C10 gi|124068|sp|P24592 Insulin-like growth factor binding protein 6 precurso 2 4.7876 0.327 R.HLDSVLQQLQTEVYR.G C10 2 5.7093 0.458 R.HLDSVLQQLQTEVYR.G C01 gi|4504619|ref|NP_001544.1 Insulin-like growth factor binding protein 7 2 2.6461 0.399 K.ITVVDALHEIPVKKGEGAEL.- C01 gi|1708572|sp|P11215 Integrin alpha-M precursor 2 2.3652 0.159 R.GRARWQCDAVLYGEQ.G C01 gi|4504779|ref|NP_002205.1 Integrin, beta 8 2 2.2234 0.137 K.IKSSSDYRVSASKKDKLILQSVCT.R C10 gi|17318569|ref|NP_006112.2 1 2 2.5615 0.28 K.AEAESLYQSKYEELQITAGR.H G01 2 2.2451 0.201 K.LNDLEDALQQAK.E G01 2 3.5991 0.314 K.LNDLEDALQQAK.E G01 2 3.5482 0.422 K.SKAEAESLYQSKYEELQITAGR.H C10 2 3.0665 0.352 K.SKAEAESLYQSKYEELQITAGR.H G01 2 4.2193 0.459 K.SKAEAESLYQSKYEELQITAGR.H G10 3 4.5205 0.449 K.SKAEAESLYQSKYEELQITAGR.H C10 3 4.2952 0.368 K.SKAEAESLYQSKYEELQITAGR.H G01 2 2.9778 0.367 K.SLNNQFASFIDK.V G01 2 2.6353 0.248 K.SLNNQFASFIDKVR.F B01 2 2.6353 0.33 K.SLNNQFASFIDKVR.F B01 2 2.8709 0.117 K.SLNNQFASFIDKVR.F B10 2 3.1903 0.29 K.SLNNQFASFIDKVR.F B01 2 3.1903 0.328 K.SLNNQFASFIDKVR.F B01 2 2.613 0.341 K.SLNNQFASFIDKVR.F C01 2 3.0492 0.402 K.SLNNQFASFIDKVR.F C10 2 3.0798 0.312 K.SLNNQFASFIDKVR.F C10 2 3.1467 0.321 K.SLNNQFASFIDKVR.F C10 3 4.779 0.466 R.FLEQQNQVLQTKWELLQQVDTSTR.T G01 1 2.2364 0.165 R.SLDLDSIIAEVK.A B01 1 2.4011 0.228 R.SLDLDSIIAEVK.A C10 2 3.9431 0.352 R.SLDLDSIIAEVK.A B01 2 4.2004 0.298 R.SLDLDSIIAEVK.A B01 2 4.1273 0.318 R.SLDLDSIIAEVK.A G01 2 2.3349 0.119 R.TNAENEFVTIK.K G01 2 2.6603 0.123 R.TNAENEFVTIKK.D B10 2 2.6603 0.169 R.TNAENEFVTIKK.D B10 2 2.2373 0.153 R.TNAENEFVTIKK.D G01 gi|40354192|ref|NP_000412.2 2 2.3778 0.334 I.SSSKGSLGGGFSSGGFSGGSFSR.G G 1 0 2 3.1761 0.422 K.GSLGGGFSSGGFSGGSFSR.G B 0 1 2 3.1761 0.455 K.GSLGGGFSSGGFSGGSFSR.G B 0 1 2 3.3455 0.431 K.GSLGGGFSSGGFSGGSFSR.G B 0 1 2 2.5517 0.383 R.ISSSKGSLGGGFSSGGFSGGSFSR.G G 1 0 2 3.1131 0.42 R.ISSSKGSLGGGFSSGGFSGGSFSR.G G 1 0 2 4.7826 0.531 R.ISSSKGSLGGGFSSGGFSGGSFSR.G G 0 1 gi|106849|pir||PC1102 Keratin 10, type I, cytoskeletal 2 3.1838 0.429 A.APGVDLTQLLNNMR.S C10 2 3.994 0.415 A.PGVDLTQLLNNMR.S C10 2 4.2815 0.481 A.PGVDLTQLLNNMR.S C10 1 2.4462 0.249 K.DAEAWFNEK.S C10 2 2.8693 0.304 K.NQILNLTTDNANILLQIDNAR.L G01 2 2.9185 0.209 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 2.9185 0.3 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 2.9311 0.445 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 2.9422 0.283 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 4.2682 0.422 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 5.3167 0.406 K.TIDDLKNQILNLTTDNANILLQIDNAR.L B01 2 4.5719 0.512 K.TIDDLKNQILNLTTDNANILLQIDNAR.L C01 2 4.6498 0.393 K.TIDDLKNQILNLTTDNANILLQIDNAR.L C10 2 4.6981 0.415 K.TIDDLKNQILNLTTDNANILLQIDNAR.L C10 2 4.955 0.487 K.TIDDLKNQILNLTTDNANILLQIDNAR.L C10 2 3.0449 0.275 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 3.0449 0.339 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 3.5462 0.385 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 3.8663 0.301 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 4.3164 0.412 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 4.3164 0.498 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 4.3683 0.37 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S B01 2 2.2011 0.28 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C10 2 2.8353 0.294 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C01 2 3.3203 0.386 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C10 2 3.449 0.369 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C01 2 4.0861 0.363 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C10 2 4.6868 0.423 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S C10 2 4.6247 0.396 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S G01 gi|4557701|ref|NP_000413.1 2 3.5292 0.337 R.TIVEEVQDGKVISSR.E C10 2 3.8147 0.449 R.TIVEEVQDGKVISSR.E C01 gi|4557703|ref|NP_000414.1 Keratin 2a 2 2.5902 0.251 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 0 1 2 2.668 0.128 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 1 0 2 2.668 0.252 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 1 0 2 3.0183 0.29 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 1 0 2 3.7656 0.324 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 0 1 2 3.7656 0.358 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F B 0 1 2 3.2431 0.306 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F G 1 0 2 3.7726 0.412 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F G 1 0 2 3.9309 0.403 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F G 0 1 2 4.3732 0.414 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F G 0 1 2 2.2124 0.289 K.SISISVAGGGGGFGAAGGFGGR.G B 0 1 2 2.521 0.336 K.SISISVAGGGGGFGAAGGFGGR.G B 0 1 2 2.521 0.403 K.SISISVAGGGGGFGAAGGFGGR.G B 0 1 2 5.4231 0.539 K.SISISVAGGGGGFGAAGGFGGR.G G 0 1 1 2.2488 0.15 K.VDLLNQEIEFLK.V C10 1 2.6787 0.142 K.VDLLNQEIEFLK.V C10 2 3.8866 0.334 K.VDLLNQEIEFLK.V C10 2 2.3557 0.294 K.VLYDAEISQIHQSVTDTNVILSMDNSR.N C10 3 4.5076 0.368 R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V B01 3 4.5076 0.403 R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V B01 3 5.0127 0.488 R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V C10 3 4.7143 0.461 R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V G01 2 2.7962 0.151 R.FLEQQNQVLQTK.W G01 1 1.9135 0.323 R.SLVGLGGTK.S C 1 0 gi|4557705|ref|NP_000217.1 2 2.263 0.252 K.EIETYHNLLEGGQEDFESSGAGK.I C10 2 2.6094 0.346 K.NYSPYYNTIDDLKDQIVDLTVGNNK.T C01 2 2.7723 0.382 K.NYSPYYNTIDDLKDQIVDLTVGNNK.T C10 3 4.0193 0.241 K.NYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR.M B10 3 4.0193 0.312 K.NYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR.M B10 3 3.8452 0.382 K.NYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR.M G10 3 4.8581 0.46 K.NYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR.M G01 3 5.3185 0.465 K.NYSPYYNTIDDLKDQIVDLTVGNNKTLLDIDNTR.M G01 2 2.4963 0.204 K.TLNDMRQEYEQLIAK.N B10 2 3.4926 0.374 K.TLNDMRQEYEQLIAK.N C10 2 3.5197 0.226 K.TLNDMRQEYEQLIAK.N C10 2 3.2604 0.248 K.TLNDMRQEYEQLIAK.N G01 2 3.3293 0.373 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G B 1 0 2 3.3293 0.435 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G B 1 0 2 3.6235 0.439 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G B 1 0 2 3.6235 0.489 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G B 1 0 2 2.6771 0.411 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G C 1 0 2 3.61 0.544 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G C 1 0 2 4.0724 0.533 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G C 0 1 2 4.7914 0.556 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G C 1 0 2 4.3443 0.52 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G G 1 0 2 4.5157 0.515 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G G 1 0 2 4.8492 0.498 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G G 0 1 2 4.0359 0.305 R.HGVQELEIELQSQLSK.K B01 2 4.0359 0.347 R.HGVQELEIELQSQLSK.K B01 2 4.7092 0.315 R.HGVQELEIELQSQLSK.K B10 2 4.7092 0.45 R.HGVQELEIELQSQLSK.K B10 2 3.4885 0.342 R.HGVQELEIELQSQLSK.K G01 2 2.2781 0.165 R.HGVQELEIELQSQLSKK.A B10 2 2.2781 0.212 R.HGVQELEIELQSQLSKK.A B10 2 3.1468 0.306 R.HGVQELEIELQSQLSKK.A B10 gi|1346346|sp|P48666|K2CC Keratin, type II cytoskeletal 6C 1 2.37 0.242 R.NLDLDSIIAEVK.A C10 1 3.1488 0.228 R.NLDLDSIIAEVK.A C10 2 2.251 0.115 R.NLDLDSIIAEVKAQYEEIAQR.S G01 gi|625223|pir||TVHURS Kinase-related protein ros-1 precursor 2 2.519 0.115 K.HLVDEAHCLRL.D C10 gi|3913957|sp|O14782 -like protein KIF3C 2 2.5594 0.158 R.FANRAKNIKNKPRVN.E C10 gi|5031857|ref|NP_005557.1 Lactate dehydrogenase A 2 2.35 0.318 K.IVSGKDYNVTANSK.L C10 2 3.3388 0.353 K.KSADTLWGIQKELQF.- C10 2 3.4535 0.389 K.KSADTLWGIQKELQF.- C10 2 3.469 0.389 K.KSADTLWGIQKELQF.- C10 1 2.4941 0.229 K.SADTLWGIQKELQF.- C10 1 2.9736 0.393 K.SADTLWGIQKELQF.- C10 1 3.0207 0.441 K.SADTLWGIQKELQF.- C10 2 2.6019 0.249 K.SADTLWGIQKELQF.- C01 2 2.8978 0.278 K.SADTLWGIQKELQF.- C10 2 3.1059 0.229 K.SADTLWGIQKELQF.- C10 2 3.8921 0.451 K.TLHPDLGTDKDKEQWK.E C10 gi|4557032|ref|NP_002291.1 Lactate dehydrogenase B 2 2.9796 0.416 K.IVADKDYSVTANSK.I C10 2 3.1249 0.45 K.IVADKDYSVTANSK.I C10 2 3.2138 0.359 K.IVADKDYSVTANSK.I C10 2 3.0016 0.244 K.LKDDEVAQLKK.S C10 2 2.3863 0.246 K.SADTLWDIQKDLK.D C01 2 3.0669 0.248 K.SADTLWDIQKDLK.D C01 2 3.1891 0.335 K.SADTLWDIQKDLK.D C10 2 3.7206 0.295 K.SADTLWDIQKDLK.D C10 1 3.1778 0.323 K.SADTLWDIQKDLKDL.- C10 2 2.4255 0.108 K.SADTLWDIQKDLKDL.- C01 2 2.7856 0.163 K.SADTLWDIQKDLKDL.- C01 2 2.9131 0.224 K.SADTLWDIQKDLKDL.- C10 2 3.1917 0.287 K.SADTLWDIQKDLKDL.- C01 2 3.3761 0.299 K.SADTLWDIQKDLKDL.- C10 1 2.2265 0.172 R.GLTSVINQK.L C10 gi|125962|sp|P02545 A 2 2.4576 0.271 R.NSNLVGAAHEELQQSR.I C01 2 2.8184 0.357 R.NSNLVGAAHEELQQSR.I C10 2 3.0643 0.412 R.NSNLVGAAHEELQQSR.I C10 gi|20178312|sp|O00151 LIM domain protein CLP-36 2 2.3019 0.217 R.VITNQYNNPAGLYSSENISNFNNALESK.T C10 2 3.8472 0.481 R.VITNQYNNPAGLYSSENISNFNNALESK.T C01 gi|5174539|ref|NP_005908.1 Malate dehydrogenase 1 2 2.4813 0.161 R.EKMDLTAKELTEEKESAFEFLSSA.- C10 gi|2495074|sp|Q13255 Metabotropic glutamate receptor 1 precursor 2 2.5361 0.207 R.LLVGLSSAMCYSAL.V C10 gi|38569475|ref|NP_002446.2 Metaxin 1 2 2.7327 0.127 L.DSLAVLTYARFTGAPLK.V C10 gi|5803092|ref|NP_006829.1 Methionine aminopeptidase 2 2.8712 0.164 K.KSKGPSAAGEQEPDKESGASVDEV.A C01 gi|5174525|ref|NP_005900.1 -associated protein 1B 2 2.4135 0.12 P.KKEVAKKEDKTPIKK.E C10 gi|2507196|sp|P53779 Mitogen activated protein kinase 10 2 2.4519 0.101 D.IWSVGCIMGEMVR.H C10 gi|346314|pir||JC1445 Multicatalytic endopeptidase complex chain C2, long splice form 2 3.1099 0.429 R.NQYDNDVTVWSPQGR.I C10 gi|4505129|ref|NP_002378.1 Mutated in colorectal cancers 2 3.0468 0.143 I.AERVKLSKTRSESSSSDRPVLGSEI.S C10 2 3.1063 0.208 I.AERVKLSKTRSESSSSDRPVLGSEI.S C10 2 3.1886 0.275 I.AERVKLSKTRSESSSSDRPVLGSEI.S C10 gi|6166599|sp|P35579 heavy chain, nonmuscle type A 2 2.6215 0.111 R.RGDLPFVVPR.R C01 gi|127144|sp|P16475 alkali, non-muscle isoform 2 2.2673 0.127 K.VLDFEHFLPMLQTVAK.N C01 2 3.3683 0.314 K.VLDFEHFLPMLQTVAK.N C10 2 3.8327 0.33 K.VLDFEHFLPMLQTVAK.N C01 2 4.0157 0.412 K.VLDFEHFLPMLQTVAK.N C10 gi|5453760|ref|NP_006147.1 Neural precursor cell expressed, developmentally down-regulated 2 2.9952 0.128 K.TLTGKEIEIDIEPTDKVER.I C01 gi|33469989|ref|NP_031387.2 Nidogen 2 2 2.456 0.132 -.MEGDRVAGRPVLSSLPVLLLLQLLMLR.A C10 gi|27262628|ref|NP_002473.2 Nuclear autoantigenic sperm protein 2 2.767 0.342 K.SLQENEEEEIGNLELAWDMLDLAK.I C01 gi|423015|pir||S34426 Nuclease sensitive element-binding protein 1 2 2.8269 0.218 R.SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK.Y C01 2 3.1709 0.295 R.SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK.Y C10 2 4.0553 0.566 R.SVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSK.Y C01 gi|4885511|ref|NP_005372.1 Nucleolin 2 2.8572 0.29 K.GLSEDTTEETLKESFDGSVR.A B01 2 2.8572 0.421 K.GLSEDTTEETLKESFDGSVR.A B01 2 3.5456 0.332 K.GLSEDTTEETLKESFDGSVR.A B01 2 3.5456 0.338 K.GLSEDTTEETLKESFDGSVR.A B01 2 3.8133 0.363 K.GLSEDTTEETLKESFDGSVR.A B10 2 4.522 0.406 K.GLSEDTTEETLKESFDGSVR.A B10 2 2.5292 0.257 K.GLSEDTTEETLKESFDGSVR.A C01 2 3.0463 0.205 K.NLPYKVTQDELKEVFEDAAEIR.L C10 2 3.0911 0.31 K.NLPYKVTQDELKEVFEDAAEIR.L C10 2 3.9353 0.406 K.NLPYKVTQDELKEVFEDAAEIR.L C01 3 4.1105 0.316 K.NLPYKVTQDELKEVFEDAAEIR.L C10 3 4.3866 0.252 K.NLPYKVTQDELKEVFEDAAEIR.L C01 2 2.489 0.2 K.TGISDVFAKNDLAVVDVR.I B01 2 2.489 0.305 K.TGISDVFAKNDLAVVDVR.I B01 2 2.5398 0.191 K.TGISDVFAKNDLAVVDVR.I B10 2 2.5398 0.202 K.TGISDVFAKNDLAVVDVR.I B10 2 3.0171 0.263 K.TGISDVFAKNDLAVVDVR.I B10 2 3.0171 0.362 K.TGISDVFAKNDLAVVDVR.I B10 2 4.5967 0.501 K.TGISDVFAKNDLAVVDVR.I C10 2 5.0692 0.475 K.TGISDVFAKNDLAVVDVR.I C01 2 5.0886 0.458 K.TGISDVFAKNDLAVVDVR.I C10 2 4.6017 0.43 K.TLVLSNLSYSATEETLQEVFEK.A B10 2 4.6017 0.465 K.TLVLSNLSYSATEETLQEVFEK.A B10 2 4.7553 0.455 K.TLVLSNLSYSATEETLQEVFEK.A B10 2 4.7553 0.496 K.TLVLSNLSYSATEETLQEVFEK.A B10 2 4.8364 0.466 K.TLVLSNLSYSATEETLQEVFEK.A B01 2 4.8364 0.511 K.TLVLSNLSYSATEETLQEVFEK.A B01 2 5.0564 0.511 K.TLVLSNLSYSATEETLQEVFEK.A B01 2 5.0564 0.523 K.TLVLSNLSYSATEETLQEVFEK.A B01 2 2.9872 0.286 K.VTQDELKEVFEDAAEIR.L B01 2 2.9872 0.287 K.VTQDELKEVFEDAAEIR.L B01 2 3.0844 0.324 K.VTQDELKEVFEDAAEIR.L B10 2 3.0844 0.362 K.VTQDELKEVFEDAAEIR.L B10 2 3.1554 0.269 K.VTQDELKEVFEDAAEIR.L B01 2 3.1554 0.318 K.VTQDELKEVFEDAAEIR.L B01 2 3.4743 0.349 K.VTQDELKEVFEDAAEIR.L B10 2 2.643 0.295 R.AIRLELQGPR.G C10 2 2.8734 0.297 R.AIRLELQGPR.G C10 2 3.4323 0.346 R.AIRLELQGPR.G C01 2 3.7386 0.512 R.KFGYVDFESAEDLEKALELTGLK.V C10 3 4.5831 0.516 R.SQPSKTLFVKGLSEDTTEETLKESFDGSVR.A C01 gi|114762|sp|P06748 Nucleophosmin 2 2.7966 0.371 K.ADKDYHFKVDNDENEHQLSLR.T C10 2 3.4428 0.452 R.TVSLGAGAKDELHIVEAEAMNYEGSPIK.V C10 gi|4557797|ref|NP_000260.1 Nucleoside-diphosphate kinase 1 isoform b 2 2.5838 0.341 R.VMLGETNPADSKPGTIR.G C10 2 2.5988 0.207 R.VMLGETNPADSKPGTIR.G C10 gi|32454750|ref|NP_002543.2 Origin recognition complex, subunit 4 2 2.8687 0.103 T.CRLDILELLEKRVK.S C01 gi|7661626|ref|NP_056455.1 PAI-1 mRNA-binding protein 2 3.1626 0.315 R.TDKSSASAPDVDDPEAFPALA.- C01 gi|21070984|ref|NP_000910.2 Peptidylglycine alpha-amidating monooxygenas 2 3.0834 0.118 K.AGIEVQEIKEAEAVVETKME.N C01 gi|118102|sp|P05092 Peptidyl-prolyl cis-trans isomerase A 1 3.7495 0.28 K.SIYGEKFEDENFILK.H C10 2 2.3303 0.181 K.SIYGEKFEDENFILK.H B01 2 2.2949 0.371 K.SIYGEKFEDENFILK.H C01 2 2.5072 0.371 K.SIYGEKFEDENFILK.H C01 2 4.0109 0.408 K.SIYGEKFEDENFILK.H C01 2 4.0665 0.453 K.SIYGEKFEDENFILK.H C01 2 4.2049 0.422 K.SIYGEKFEDENFILK.H C01 2 4.447 0.453 K.SIYGEKFEDENFILK.H C10 2 4.746 0.415 K.SIYGEKFEDENFILK.H C10 2 5.1832 0.454 K.SIYGEKFEDENFILK.H C10 2 3.6728 0.353 K.VKEGMNIVEAMER.F C01 2 4.0952 0.47 K.VKEGMNIVEAMER.F C10 2 4.2692 0.489 K.VKEGMNIVEAMER.F C01 1 2.2812 0.349 R.VSFELFADKVPK.T C10 2 2.3549 0.189 R.VSFELFADKVPK.T B01 2 2.4521 0.286 R.VSFELFADKVPK.T C01 2 2.505 0.227 R.VSFELFADKVPK.T C10 gi|20141713|sp|P30044 Peroxiredoxin 5, mitochondrial precursor 2 2.3034 0.343 K.VGDAIPAVEVFEGEPGNKVNLAELFK.G C01 gi|129902|sp|P00558 Phosphoglycerate kinase 1 2 3.2326 0.277 K.ALESPERPFLAILGGAK.V C10 2 3.0658 0.399 K.LGDVYVNDAFGTAHR.A C10 2 2.2279 0.204 K.NGVKITLPVDFVTADKFDENAK.T C10 3 3.8677 0.466 K.NGVKITLPVDFVTADKFDENAK.T C10 3 4.1178 0.452 K.NGVKITLPVDFVTADKFDENAK.T C01 gi|105934|pir||S06756 Phosphopyruvate hydratase 2 3.5584 0.399 V.PSGASTGIYEALELR.D C10 gi|1070590|pir||UQHUB Polyubiquitin 3 2 3.1563 0.341 -.MQIFVKTLTGKTITLEVEPSDTIENVK.A C01 2 3.4599 0.373 -.MQIFVKTLTGKTITLEVEPSDTIENVK.A C10 2 4.4356 0.476 -.MQIFVKTLTGKTITLEVEPSDTIENVK.A C01 2 2.2726 0.221 K.ESTLHLVLR.L C10 2 2.3402 0.271 K.ESTLHLVLR.L C01 2 2.6523 0.292 K.ESTLHLVLR.L C01 2 2.3017 0.245 K.IQDKEGIPPDQQR.L C01 2 2.3428 0.27 K.IQDKEGIPPDQQR.L C01 3 3.7838 0.227 K.QLEDGRTLSDYNIQKESTLHLVLR.L C01 1 2.2317 0.247 K.TITLEVEPSDTIENVK.A C10 1 2.9205 0.382 K.TITLEVEPSDTIENVK.A C01 2 2.371 0.146 K.TITLEVEPSDTIENVK.A B10 2 2.9431 0.15 K.TITLEVEPSDTIENVK.A B01 2 2.7639 0.272 K.TITLEVEPSDTIENVK.A C01 2 2.9648 0.256 K.TITLEVEPSDTIENVK.A C10 1 2.5735 0.2 K.TITLEVEPSDTIENVKAK.I C10 2 2.5055 0.247 K.TITLEVEPSDTIENVKAK.I C01 2 3.283 0.302 K.TLTGKTITLEVEPSDTIENVKAK.I C01 2 3.4133 0.285 K.TLTGKTITLEVEPSDTIENVKAK.I C10 3 4.1793 0.489 K.TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR.L C10 3 4.7191 0.456 K.TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR.L C01 1 2.008 0.123 R.TLSDYNIQK.E C10 2 2.8605 0.236 R.TLSDYNIQKESTLHLVLR.L C01 2 3.0924 0.293 R.TLSDYNIQKESTLHLVLR.L C01 3 4.2295 0.371 R.TLSDYNIQKESTLHLVLR.L C01 gi|4826898|ref|NP_005013.1 1 2 3.7436 0.331 K.TFVNITPAEVGVLVGKDR.S C10 2 4.4033 0.395 K.TFVNITPAEVGVLVGKDR.S C01 1 2.7778 0.418 R.SSFYVNGLTLGGQK.C C10 gi|23110942|ref|NP_002781.2 Proteasome alpha 5 subunit 2 2.3769 0.246 R.SEYDRGVNTFSPEGR.L C10 gi|5031973|ref|NP_005733.1 Protein disulfide isomerase-related protein 2 2.5967 0.139 P.PPELLEIINEDIAKR.T C10 gi|2144545|pir||ISHUSS Protein disulfide-isomerase 2 3.0764 0.375 -.DAPEEEDHVLVLRK.S C10 2 2.9013 0.265 K.EYTAGREADDIVNWLK.K C10 2 2.5624 0.154 K.FFPASADRTVIDYNGER.T C10 gi|1085373|pir||S55507 Protein disulfide-isomerase ER60 precursor 2 3.3003 0.355 A.SDVLELTDDNFESR.I C10 2 2.2919 0.21 I.VGFFDDSFSEAHSEFLK.A C10 3 4.2002 0.312 K.FISDKDASIVGFFDDSFSEAHSEFLK.A C10 2 3.2245 0.352 K.IFRDGEEAGAYDGPR.T C10 2 2.6374 0.418 K.RLAPEYEAAATR.L C10 2 2.8972 0.408 K.TFSHELSDFGLESTAGEIPVVAIR.T C10 2 3.8677 0.573 K.TFSHELSDFGLESTAGEIPVVAIR.T C10 2 3.0075 0.32 R.FLQDYFDGNLKR.Y C10 2 3.9089 0.452 R.KTFSHELSDFGLESTAGEIPVVAIR.T C10 gi|107499|pir||A39577 Protein-tyrosine kinase JAK1 2 3.2014 0.251 D.LMTRCMNYDPNQRP.F C10 gi|2117873|pir||S64635 Pyruvate kinase 2 2.7376 0.281 R.LNFSHGTHEYHAETIK.N C10 2 2.209 0.221 R.SVETLKEMIK.S C01 3 4.4608 0.368 R.TATESFASDPILYRPVAVALDTKGPEIR.T C01 gi|4506407|ref|NP_002873.1 RAN binding protein 1 3 4.1181 0.398 K.DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK.T C10 2 2.5348 0.145 R.FASENDLPEWKER.G C01 gi|3913590|sp|Q15303 Receptor protein-tyrosine kinase erbB-4 precursor 2 2.3499 0.203 A.PHVQEDSSTQRYSADPTVFAPER.S C01 gi|28882049|ref|NP_002905.2 Replication factor C 2 2.4164 0.106 D.IIRGPILSFASTRTIFKK.G B01 2 2.4164 0.11 D.IIRGPILSFASTRTIFKK.G B01 gi|15431288|ref|NP_009035.3 Ribosomal protein L10a 1 2.0271 0.231 K.KYDAFLASESLIK.Q C10 2 2.2846 0.273 K.KYDAFLASESLIK.Q C10 2 3.3187 0.306 K.KYDAFLASESLIK.Q C10 2 3.9615 0.401 K.KYDAFLASESLIK.Q C10 2 4.2785 0.463 K.KYDAFLASESLIKQIPR.I C01 gi|4506621|ref|NP_000978.1 Ribosomal protein L26 2 2.262 0.166 R.SMPIRKDDEVQVVR.G C01 gi|4506625|ref|NP_000981.1 Ribosomal protein L27a 2 2.6414 0.288 K.NKTGAAPIIDVVR.S C01 gi|4506715|ref|NP_001022.1 Ribosomal protein S28 2 3.4841 0.399 K.GPVREGDVLTLLESER.E C01 2 4.3079 0.257 K.GPVREGDVLTLLESER.E C10 3 3.8981 0.314 K.GPVREGDVLTLLESEREAR.R C01 2 3.0031 0.253 R.EGDVLTLLESEREAR.R C10 2 3.0453 0.255 R.EGDVLTLLESEREAR.R C01 2 2.5058 0.387 R.NVKGPVREGDVLTLLESEREAR.R C10 2 2.3522 0.1 R.TQGTKIASDGLK.G C01 gi|4506671|ref|NP_000995.1 Ribosomal protein, large P2 2 3.037 0.318 K.ILDSVGIEADDDRLNKVISELNGK.N C10 3 4.5473 0.366 K.ILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGK.L C01 2 2.8136 0.311 K.LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK.K C10 2 3.4009 0.524 K.LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK.K C01 1 2.6621 0.383 K.NIEDVIAQGIGK.L C01 1 2.7167 0.269 K.NIEDVIAQGIGK.L C10 gi|4506669|ref|NP_000994.1 Ribosomal protein, large, P1 1 1.9448 0.272 K.AAGVNVEPFWPGLFAK.A C01 1 2.1101 0.351 K.AAGVNVEPFWPGLFAK.A C10 1 2.437 0.383 K.AAGVNVEPFWPGLFAK.A C10 2 2.2413 0.196 K.AAGVNVEPFWPGLFAK.A C10 gi|5803137|ref|NP_006734.1 RNA binding motif protein 3 2 2.8304 0.315 R.GFGFITFTNPEHASVAMR.A C01 2 2.9686 0.385 R.GFGFITFTNPEHASVAMR.A C01 2 2.3833 0.295 R.SRGFGFITFTNPEHASVAMR.A C10 2 2.4128 0.406 R.SRGFGFITFTNPEHASVAMR.A C01 2 2.2856 0.339 R.YYDSRPGGYGYGYGR.S C 1 0 2 2.3526 0.352 R.YYDSRPGGYGYGYGR.S C 1 0 2 2.6269 0.275 R.YYDSRPGGYGYGYGR.S C 0 1 2 2.7478 0.138 R.YYDSRPGGYGYGYGR.S C 0 1 gi|4504451|ref|NP_002130.1 RNA binding motif protein, X 2 2.5851 0.307 K.AIKVEQATKPSFESGR.R C10 gi|4507353|ref|NP_003478.1 RNA-binding protein 56 2 2.4358 0.276 R.TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK.Q C10 2 3.2338 0.445 R.TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK.Q C01 gi|1082775|pir||A54601 RNA-binding protein AUF1 1 2.07 0.342 K.IFVGGLSPDTPEEK.I C10 gi|4506761|ref|NP_002957.1 S100 calcium-binding protein A10 2 3.4067 0.4 K.FAGDKGYLTKEDLR.V C10 2 3.9829 0.374 K.FAGDKGYLTKEDLR.V C01 2 2.7005 0.315 R.VLMEKEFPGFLENQKDPLAVDK.I C01 gi|5032057|ref|NP_005611.1 S100 calcium-binding protein A11 1 2.5868 0.23 K.TEFLSFMNTELAAFTK.N C10 2 3.9193 0.469 K.TEFLSFMNTELAAFTK.N C01 2 3.9381 0.442 K.TEFLSFMNTELAAFTK.N C10 1 1.9317 0.354 K.YAGKDGYNYTLSK.T C10 2 2.3848 0.312 K.YAGKDGYNYTLSK.T C01 2 2.6913 0.388 K.YAGKDGYNYTLSK.T C10 gi|33877230|gb|AAH02829.2 S100 calcium-binding protein A2 3 4.3261 0.422 K.ELLHKELPSFVGEKVDEEGLKK.L C01 3 4.4001 0.408 K.ELLHKELPSFVGEKVDEEGLKK.L C10 2 3.263 0.269 K.ELPSFVGEKVDEEGLK.K C10 2 3.762 0.336 K.ELPSFVGEKVDEEGLK.K C01 1 2.9494 0.289 K.ELPSFVGEKVDEEGLKK.L C01 1 3.2217 0.29 K.ELPSFVGEKVDEEGLKK.L C10 2 3.007 0.214 K.ELPSFVGEKVDEEGLKK.L C10 2 3.4608 0.327 K.ELPSFVGEKVDEEGLKK.L C01 2 3.8591 0.377 K.ELPSFVGEKVDEEGLKK.L C10 2 2.8779 0.147 L.PSFVGEKVDEEGLK.K C10 2 3.6146 0.318 L.PSFVGEKVDEEGLK.K C01 2 3.8969 0.444 L.PSFVGEKVDEEGLKK.L C01 2 4.1507 0.259 L.PSFVGEKVDEEGLKK.L C10 gi|7657532|ref|NP_055439.1 S100 calcium-binding protein A6 1 2.1599 0.306 K.ELIQKELTIGSK.L C01 1 2.2675 0.328 K.ELIQKELTIGSK.L C10 2 2.7571 0.379 K.ELIQKELTIGSK.L C01 2 2.7817 0.282 K.ELIQKELTIGSK.L C10 2 4.3114 0.322 K.ELKELIQKELTIGSK.L C10 2 4.378 0.364 K.ELKELIQKELTIGSK.L C01 3 4.0022 0.432 R.LMEDLDRNKDQEVNFQEYVTFLGALALIYNEALKG. C 1 0 2 2.9008 0.337 R.NKDQEVNFQEYVTFLGALALIYNEALKG.- C10 gi|4506773|ref|NP_002956.1 S100 calcium-binding protein A9 2 3.8114 0.317 R.NIETIINTFHQYSVK.L C10 gi|130998|sp|P02812 Salivary proline-rich protein precursor (Clone CP7 2 2.4257 0.204 P.PPGKPQGPPPQGGSKSR.S G 0 1 gi|4507171|ref|NP_003109.1 Secreted protein, acidic, cysteine-rich 2 2.253 0.225 K.NVLVTLYERDEDNNLLTEK.Q C01 gi|1711383|sp|Q01105|SET SET protein (HLA-DR associated protein II) 3 4.7054 0.327 K.IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR.V B10 3 4.7054 0.464 K.IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR.V B10 2 2.3495 0.375 K.SGYRIDFYFDENPYFENK.V C10 2 4.1514 0.356 K.VLSKEFHLNESGDPSSK.S C10 2 4.6861 0.353 K.VLSKEFHLNESGDPSSK.S C01 1 3.1003 0.256 R.IDFYFDENPYFENK.V C10 2 2.6607 0.259 R.IDFYFDENPYFENK.V B10 2 2.6607 0.32 R.IDFYFDENPYFENK.V B10 2 2.229 0.292 R.IDFYFDENPYFENK.V C10 2 2.8046 0.279 R.IDFYFDENPYFENK.V C01 2 3.3201 0.286 R.IDFYFDENPYFENK.V C01 2 3.7586 0.266 R.IDFYFDENPYFENK.V C10 gi|21361274|ref|NP_006007.2 Sialomucin CD164 2 3.2728 0.12 S.APVTSLPLVTTPAPETCEGRNS.C G01 gi|5902102|ref|NP_008869.1 Small nuclear ribonucleoprotein D1 polypeptide (16kD 2 2.6991 0.341 K.NREPVQLETLSIR.G C10 gi|5902096|ref|NP_008867.1 SMT3 homolog 1 1 2.0012 0.157 K.VAGQDGSVVQFK.I C01 1 2.0846 0.262 K.VAGQDGSVVQFK.I C10 gi|21361374|ref|NP_009168.2 SP140 nuclear body protein 2 2.2973 0.146 R.MVAEIQNVEGQN.L C01 2 2.3547 0.126 R.MVAEIQNVEGQN.L C01 gi|5454052|ref|NP_006133.1 Stratifin 2 2.398 0.132 K.LAEQAERYEDMAAFMK.G C10 2 2.5492 0.304 K.LAEQAERYEDMAAFMK.G C10 2 3.2125 0.213 K.LAEQAERYEDMAAFMK.G C01 2 3.7109 0.39 K.LAEQAERYEDMAAFMK.G C01 2 3.8188 0.402 K.LAEQAERYEDMAAFMK.G C10 2 3.9347 0.43 K.LAEQAERYEDMAAFMK.G C10 2 2.3983 0.304 R.VLSSIEQKSNEEGSEEKGPEVR.E C01 2 2.6261 0.287 R.VLSSIEQKSNEEGSEEKGPEVR.E C10 2 2.9475 0.249 R.VLSSIEQKSNEEGSEEKGPEVR.E C01 2 2.9829 0.209 R.VLSSIEQKSNEEGSEEKGPEVR.E C10 2 2.6737 0.236 R.YLAEVATGDDKKR.I C10 gi|4507149|ref|NP_000445.1 Superoxide dismutase 1 3 3.9322 0.334 R.TLVVHEKADDLGKGGNEESTKTGNAGSR.L C01 gi|135155|sp|P18827 Syndecan-1 precursor 2 2.5424 0.181 K.EGEAVVLPEVEPGLTAR.E B10 2 2.5424 0.199 K.EGEAVVLPEVEPGLTAR.E B10 2 3.17 0.206 K.EGEAVVLPEVEPGLTAR.E B10 2 3.8245 0.328 K.EGEAVVLPEVEPGLTAR.E B01 2 3.8245 0.366 K.EGEAVVLPEVEPGLTAR.E B01 2 2.2877 0.165 K.EGEAVVLPEVEPGLTAR.E C01 gi|2851418|sp|P31431 Syndecan-4 precursor 2 3.0222 0.37 A.ESIRETEVIDPQDLLEGR.Y C01 2 3.112 0.202 A.ESIRETEVIDPQDLLEGR.Y C01 2 2.2199 0.354 K.RISPVEESEDVSNKVSM.S C01 2 2.7336 0.2 K.RISPVEESEDVSNKVSM.S C01 2 2.7928 0.347 K.RISPVEESEDVSNKVSM.S C10 2 3.2318 0.422 K.RISPVEESEDVSNKVSM.S C10 2 3.29 0.447 K.RISPVEESEDVSNKVSM.S C01 2 3.5168 0.41 K.RISPVEESEDVSNKVSM.S C01 2 3.5414 0.422 K.RISPVEESEDVSNKVSM.S C10 2 3.5732 0.39 K.RISPVEESEDVSNKVSM.S C01 2 3.6385 0.51 K.RISPVEESEDVSNKVSM.S C01 gi|2136258|pir||I59377 Template activating factor-I, splice form alpha 3 3.9001 0.178 K.KGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK.Y C10 gi|2136261|pir||I54353 Tetracycline transporter-like protein 2 3.1906 0.258 G.GEVAAVKRALLLLVPAFL.L C10 gi|3153859|gb|AAC17430.1 Thioredoxin delta 3 1 2.5371 0.176 K.MIKPFFHSLSEK.Y C10 1 2.4616 0.258 K.VGEFSGANK.E C10 gi|136578|sp|P13472 Thymosin beta-10 3 4.1372 0.22 K.LKKTETQEKNTLPTKETIEQEKRSEIS.- C10 2 2.2104 0.29 K.NTLPTKETIEQEKR.S C01 2 2.4306 0.315 K.TETQEKNTLPTKETIEQEKR.S C10 gi|2136280|pir||I38344 2 2.3519 0.126 E.FTVTSLDENQEYEFR.V C10 2 3.2996 0.107 F.R*VAATNR*FGIGSYLQSEVIECR*SS.I B10 2 2.2112 0.263 K.RLCPTTSFLVENLDEHQMYEFRVKAVNEIG.E C10 gi|4507635|ref|NP_003926.1 Topoisomerase (DNA) III beta 2 2.2369 0.176 K.YFQGKYGDLDSSLISFGPCQ.T G01 gi|25777711|ref|NP_008861.2 Transcription elongation factor B 2 3.022 0.424 K.TMLEDLGMDDEGDDDPVPLPNVNAAILKK.V C01 gi|107909|pir||JC1235 Transcription factor BTF3a 2 3.6831 0.152 T.RGEEPQMKETIMNQEKLAKLQ.A C01 gi|6686341|sp|Q15542 Transcription initiation factor TFIID subunit 5 2 3.3431 0.242 V.GSVAVEDQPDVSAVLSAYNQQGDP.T B01 gi|12746552|sp|O15164 Transcription intermediary factor 1-alpha 2 3.02 0.106 S.PFATQVGVIRCPVCSQ.E C01 gi|4507357|ref|NP_003555.1 Transgelin 2 2 2.4562 0.116 R.NFSDNQLQEGKNVIGLQMGTNR.G C01 2 3.1734 0.227 R.NFSDNQLQEGKNVIGLQMGTNR.G C10 gi|346399|pir||A45050 Transketolase 1 1.9292 0.281 K.AVELAANTK.G C10 2 4.4211 0.458 K.LGHASDRIIALDGDTK.N C10 2 4.4774 0.464 K.LGHASDRIIALDGDTK.N C01 2 4.5016 0.467 K.LGHASDRIIALDGDTK.N C10 2 2.3936 0.352 R.SVPTSTVFYPSDGVATEK.A C10 2 2.4981 0.331 R.TSRPENAIIYNNNEDFQVGQAK.V C10 2 2.6163 0.319 T.PPQEDAPSVDIANIR.M C01 2 3.1802 0.408 T.PPQEDAPSVDIANIR.M C10 2 3.8695 0.482 T.PPQEDAPSVDIANIR.M C10 2 2.3989 0.188 V.PTSTVFYPSDGVATEK.A C10 2 2.9787 0.336 V.PTSTVFYPSDGVATEK.A C10 3 3.771 0.405 V.PTSTVFYPSDGVATEKAVELAANTK.G C10 gi|2119925|pir||I54251 Translation elongation factor eEF-1 alpha 2 3.0416 0.392 R.VETGVLKPGMVVTFAPVNVTTEVK.S C01 2 3.1243 0.353 R.VETGVLKPGMVVTFAPVNVTTEVK.S C10 gi|1082871|pir||C53045 Translation initiation factor eIF-4C 2 3.9217 0.403 R.ELVFKEDGQEYAQVIK.M C10 2 4.0399 0.326 R.ELVFKEDGQEYAQVIK.M C01 gi|4507645|ref|NP_000356.1 Triosephosphate isomerase 1 2 2.8423 0.171 K.ELASQPDVDGFLVGGASLKPEFVDIINAK.Q C10 2 2.8963 0.376 K.ELASQPDVDGFLVGGASLKPEFVDIINAKQ.- C10 3 3.7629 0.171 K.ELASQPDVDGFLVGGASLKPEFVDIINAKQ.- B01 3 3.7629 0.194 K.ELASQPDVDGFLVGGASLKPEFVDIINAKQ.- B01 1 2.4479 0.311 K.VIADNVKDWSK.V C10 gi|4507651|ref|NP_003281.1 4 2 2.7589 0.195 R.KLVILEGELERAEER.A C01 2 3.9467 0.407 R.KLVILEGELERAEER.A C01 gi|136085|sp|P06753 Tropomyosin alpha 3 chain 2 2.6053 0.126 K.HIAEEADRKYEEVAR.K C10 2 3.0347 0.263 K.HIAEEADRKYEEVAR.K C10 2 3.489 0.332 K.HIAEEADRKYEEVAR.K C01 1 2.8487 0.196 R.ALKDEEKMELQEIQLK.E C10 2 3.0862 0.238 R.ALKDEEKMELQEIQLK.E C10 2 5.2151 0.417 R.ALKDEEKMELQEIQLK.E C01 2 5.2242 0.34 R.ALKDEEKMELQEIQLK.E C10 gi|136090|sp|P07951 Tropomyosin beta chain 2 3.028 0.165 K.HIAEDSDRKYEEVAR.K C01 2 3.2496 0.308 K.HIAEDSDRKYEEVAR.K C10 gi|1082876|pir||S55467 Tropomyosin isoform 2 3.0165 0.365 K.HIAEDADRKYEEVAR.K C10 2 2.6692 0.183 R.IQLVEEELDRAQER.L C10 2 3.2546 0.23 R.IQLVEEELDRAQER.L C10 2 3.3372 0.134 R.IQLVEEELDRAQER.L C10 2 3.4122 0.149 R.IQLVEEELDRAQER.L C01 2 2.5871 0.193 R.KLVIIESDLERAEER.A C10 2 3.0544 0.257 R.LATALQKLEEAEKAADESER.G C01 2 3.7248 0.454 R.LATALQKLEEAEKAADESER.G C10 2 4.4545 0.446 R.LATALQKLEEAEKAADESER.G C01 2 4.8455 0.45 R.LATALQKLEEAEKAADESER.G C01 2 4.8869 0.358 R.LATALQKLEEAEKAADESER.G C01 3 4.1723 0.407 R.LATALQKLEEAEKAADESER.G C01 3 4.3024 0.268 R.LATALQKLEEAEKAADESER.G C10 2 4.152 0.29 R.LATALQKLEEAEKAADESERGMK.V C01 3 3.851 0.255 R.LATALQKLEEAEKAADESERGMK.V C01 2 2.5288 0.186 R.RIQLVEEELDRAQER.L C10 2 2.9495 0.258 R.RIQLVEEELDRAQER.L C01 3 3.7967 0.384 R.RIQLVEEELDRAQER.L C10 gi|136096|sp|P12324 Tropomyosin, cytoskeletal type 2 2.2336 0.109 R.AREQAEAEVASLNR.R C01 2 2.6705 0.278 R.KLVIIEGDLERTEERAELAESR.C C01 3 3.9987 0.361 R.KLVIIEGDLERTEERAELAESR.C C10 1 2.5353 0.127 R.MLDQTLLDLNEM.- C10 gi|4759212|ref|NP_004598.1 -specific chaperone a 2 3.3513 0.276 R.RLEAAYLDLQR.I C01 2 3.6471 0.372 R.RLEAAYLDLQR.I C10 gi|4507669|ref|NP_003286.1 Tumor protein, translationally-controlled 1 2 3.269 0.405 R.DLISHDEMFSDIYK.I C10 gi|4507949|ref|NP_003395.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptid 2 2.5184 0.217 K.AVTEQGHELSNEERNLLSVAYK.N C10 2 2.5694 0.231 K.LAEQAERYDDMAAAMK.A C01 2 2.8821 0.237 K.LAEQAERYDDMAAAMK.A C01 2 2.8999 0.264 K.LAEQAERYDDMAAAMK.A C10 2 3.5208 0.424 K.LAEQAERYDDMAAAMK.A C10 2 3.6228 0.449 K.LAEQAERYDDMAAAMK.A C01 2 3.793 0.253 K.LAEQAERYDDMAAAMK.A C10 2 4.0693 0.407 K.LAEQAERYDDMAAAMK.A C01 2 2.9433 0.31 K.TAFDEAIAELDTLNEESYKDSTLIMQLLR.D C01 2 3.0266 0.264 K.TAFDEAIAELDTLNEESYKDSTLIMQLLR.D C10 gi|5803225|ref|NP_006752.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptid 2 2.3678 0.221 K.AAFDDAIAELDTLSEESYKDSTLIMQLLR.D C01 2 3.2094 0.367 K.LAEQAERYDEMVESMK.K C10 2 3.3033 0.265 K.LAEQAERYDEMVESMK.K C10 2 2.2378 0.122 R.DNLTLWTSDMQGDGEEQNKEALQDVEDENQ.- C01 2 3.2796 0.416 R.DNLTLWTSDMQGDGEEQNKEALQDVEDENQ.- C10 2 2.6492 0.341 R.YLAEFATGNDRK.E C10 2 2.2098 0.239 R.YLAEFATGNDRKEAAENSLVAYK.A C10 2 2.7204 0.34 R.YLAEFATGNDRKEAAENSLVAYK.A C10 gi|5803227|ref|NP_006817.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptid 2 2.3427 0.286 K.AVTEQGAELSNEERNLLSVAYK.N C01 2 2.4694 0.237 K.LAEQAERYDDMATCMK.A C01 gi|4507953|ref|NP_003397.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptid 2 2.6767 0.307 I.AELDTLSEESYKDSTLIMQLLR.D C10 2 2.7955 0.36 K.LAEQAERYDDMAACMK.S C10 2 3.7402 0.455 K.LAEQAERYDDMAACMK.S C10 2 2.7824 0.119 K.SVTEQGAELSNEERNLLSVAYK.N C01 2 2.6107 0.289 R.YLAEVAAGDDKKGIVDQSQQAYQEAFEISKK.E C10 gi|2501082|sp|Q15836 Vesicle-associated membrane protein 3 2 2.7898 0.43 R.LQQTQNQVDEVVDIMR.V C01 2 3.6271 0.516 R.LQQTQNQVDEVVDIMR.V C01 gi|20532424|sp|P56704 WNT-3A protein 2 2.2047 0.215 R.DRTCNVSSHGIDGCDLLCCGR.G G10 gi|340419|gb|AAA61308.1 Y box binding protein-1 2 3.0216 0.283 R.NDTKEDVFVHQTAIKK.N C10 2 3.8882 0.331 R.NDTKEDVFVHQTAIKK.N C01 2 2.4998 0.226 R.NGYGFINRNDTKEDVFVHQTAIKK.N C10 2 2.589 0.38 R.NYQQNYQNSESGEKNEGSESAPEGQAQQR.R C01 2 2.4471 0.198 R.RPQYSNPPVQGEVMEGADNQGAGEQGRPVR.Q C 0 1 gi|31657111|ref|NP_056380.1 Zinc finger protein 294 2 2.3913 0.241 R.QSLPMQWLHRPLLEG.R G01 gi|4508045|ref|NP_003451.1 Zona pellucida glycoprotein 2 2 2.5312 0.12 K.TLLKTKLSEK.C C10 Supplementary Table II. A complete list of the 201 proteins identified in the media of HMEC cells arranged according to their membrane localization: A) integral membrane proteins with transmembrane domains and the identified peptide being extracellular, B) integral membrane proteins with transmembrane domains and the detected peptide is not extracellular, C) proteins associated to the extracellular surface of the plasma membrane, D) proteins whose localization is unknown, and E) non-extracellular proteins. The fraction in which the proteins were identified and the number of identifications made per peptide according to treatment are listed. Abbreviations: B, biotinylated and isolated by streptavidin-affinity column; G, glycosylated and isolated by lectin- affinity chromatography; C, crude preparation of media samples.

A. Membrane-associated proteins with transmembrane domains and detected peptide is extracellular Reference Protein name Fraction Control PMA gi|2851418|sp|P31431 Syndecan-4 precursor C 3 8 gi|135155|sp|P18827 Syndecan-1 precursor B, C 3 3 gi|13626550|sp|Q9UNN8 Endothelial cell protein C/activated protein C receptor B 2 3 gi|4503107|ref|NP_000090.1 Cystatin C C 2 1 gi|4506761|ref|NP_002957.1 S100 calcium-binding protein A10 C 1 2 gi|625223|pir||TVHURS Kinase-related protein ros-1 precursor C 1 0 gi|2136261|pir||I54353 Tetracycline transporter-like protein C 1 0 gi|4508045|ref|NP_003451.1 Zona pellucida glycoprotein 2 C 1 0 gi|105583|pir||S13530 CD44E protein C 0 2 gi|2501082|sp|Q15836 Vesicle-associated membrane protein 3 C 0 2 gi|178540|gb|AAA51722.1 Amyloid-beta protein precursor C 0 1 gi|115349|sp|P08572 Collagen alpha 2(IV) chain precursor B 0 1 gi|7512400|pir||T08851 Down syndrome cell adhesion protein 1 G 0 1 gi|4757960|ref|NP_004351.1 E-cadherin B 0 1 gi|2811086|sp|P00533 Epidermal growth factor receptor precursor C 0 1 gi|125758|sp|P01594 Ig kappa chain V-I region AU C 0 1 gi|1708572|sp|P11215 Integrin alpha-M precursor C 0 1 gi|21361274|ref|NP_006007.2 Sialomucin CD164 G 0 1

B. Membrane-integral proteins with transmembrane domains and the detected peptide is not extracellular Reference Protein name Fraction Control PMA gi|1168210|sp|P10314 HLA class I histocompatibility antigen, A-32 alpha chain precu C1 0 gi|4504779|ref|NP_002205.1 Integrin, beta 8 C 1 0 gi|12643539|sp|O14525 Astrotactin 1 G 0 1 gi|3913590|sp|Q15303 Receptor protein-tyrosine kinase erbB-4 precursor C 0 1

C. Proteins associated to the extracellular surface of the plasma membrane Reference Protein name Fraction Control PMA gi|4503571|ref|NP_001419.1 Enolase 1 C 22 5 gi|14916999|sp|P11021 78 kDa glucose-regulated protein precursor C 21 1 gi|5031857|ref|NP_005557.1 Lactate dehydrogenase A C 10 1 gi|4757900|ref|NP_004334.1 Calreticulin precursor B, C 9 5 gi|7657532|ref|NP_055439.1 S100 calcium-binding protein A6 C 5 3 gi|5032057|ref|NP_005611.1 S100 calcium-binding protein A11 C 4 2 gi|4758516|ref|NP_004485.1 Hepatoma-derived growth factor C 3 8 gi|1708307|sp|P54652 Heat shock-related 70 kDa protein 2 C 3 2 gi|4507645|ref|NP_000356.1 Triosephosphate isomerase 1 B, C 3 2 gi|229674|pdb|1ALD Aldolase A C 3 0 gi|5729877|ref|NP_006588.1 Heat shock 70kD protein 10 C 2 3 gi|6686256|sp|P80723 Brain acid soluble protein 1 C 2 1 gi|4757756|ref|NP_004030.1 Annexin A2 C 1 4 gi|118276|sp|P07108 Acyl-CoA-binding protein C 1 2 gi|124068|sp|P24592 Insulin-like growth factor binding protein 6 precursor C 1 1 gi|17391477|gb|AAH18671.1 Annexin 5 C 1 0 gi|37622885|ref|NP_003860.2 Carboxylesterase 2 isoform 1 B 1 0 gi|298878|gb|AAB25950.1 Immunoglobulin production stimulating factor-II beta C 1 0 gi|4502101|ref|NP_000691.1 Annexin I C 0 2 gi|4503143|ref|NP_001900.1 Cathepsin D preproprotein G 0 1 gi|4504619|ref|NP_001544.1 Insulin-like growth factor binding protein 7 C 0 1 gi|4507171|ref|NP_003109.1 Secreted protein, acidic, cysteine-rich C 0 1 gi|4507149|ref|NP_000445.1 Superoxide dismutase 1 C 0 1

D. Proteins of unknown localization Reference Protein name Fraction Control PMA gi|4502549|ref|NP_001734.1 Calmodulin 2 B, C 20 17 gi|346399|pir||A45050 Transketolase C 10 2 gi|4557227|ref|NP_001077.1 Arylacetamide deacetylase C 6 0 gi|4826754|ref|NP_005121.1 Heparin-binding growth factor binding protein C 1 1 gi|284018|pir||A45290 Calcium channel protein type L B 1 0 gi|6457342|gb|AAF09483.1 E2IG4 C 1 0 gi|7512559|pir||T12518 Hypothetical protein DKFZp434D193.1 C 1 0 gi|105934|pir||S06756 Phosphopyruvate hydratase C 1 0

E. Non-extracellular proteins Reference Protein name Fraction Control PMA gi|4502027|ref|NP_000468.1 Albumin precursor C 25 13 gi|4885511|ref|NP_005372.1 Nucleolin B, C 23 20 gi|4557705|ref|NP_000217.1 Keratin 9 B, G, C 22 9 gi|106849|pir||PC1102 Keratin 10, type I, cytoskeletal B, G, C 11 18 gi|4557703|ref|NP_000414.1 Keratin 2a B, G, C 11 13 gi|7669492|ref|NP_002037.2 Glyceraldehyde 3-phosphate dehydrogenase C 11 8 gi|17318569|ref|NP_006112.2 B, G, C 10 18 gi|4557032|ref|NP_002291.1 Lactate dehydrogenase B C 10 5 gi|1070590|pir||UQHUB Polyubiquitin 3 B, C 9 16 gi|1082876|pir||S55467 tropomyosin isoform C 9 9 gi|133257|sp|P22626|ROA2 Heterogeneous nuclear ribonucleoproteins A2/B1 C 9 6 gi|1711383|sp|Q01105|SET SET protein (HLA-DR associated protein II) B, C 9 3 gi|1085373|pir||S55507 Protein disulfide-isomerase ER60 precursor C 9 0 gi|118102|sp|P05092 Peptidyl-prolyl cis-trans isomerase A B, C 7 10 gi|33877230|gb|AAH02829.2 S100 calcium-binding protein A2 C 7 6 gi|5454052|ref|NP_006133.1 Stratifin C 7 4 gi|1070613|pir||ATHUSM Actin alpha 2, aortic smooth muscle C 6 6 gi|126792|sp|P22712 C-myc promoter-binding protein C 6 4 gi|4501885|ref|NP_001092.1 Beta actin C 6 3 gi|5803225|ref|NP_006752.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase acti C 6 2 gi|4507949|ref|NP_003395.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase acti C 5 5 gi|136085|sp|P06753 Tropomyosin alpha 3 chain C 5 2 gi|4826838|ref|NP_004987.1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 C 5 1 gi|129902|sp|P00558 Phosphoglycerate kinase 1 C 4 1 gi|15431288|ref|NP_009035.3 Ribosomal protein L10a C 4 1 gi|4507953|ref|NP_003397.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase acti C 4 1 gi|5803137|ref|NP_006734.1 RNA binding motif protein 3 C 3 5 gi|5031635|ref|NP_005498.1 Cofilin 1 C 3 4 gi|1085310|pir||S53728 Fructosyllysine-specific binding protein B 3 4 gi|4506715|ref|NP_001022.1 Ribosomal protein S28 C 3 3 gi|4506671|ref|NP_000995.1 Ribosomal protein, large P2 C 3 3 gi|4504425|ref|NP_002119.1 High-mobility group protein 1 C 3 2 gi|40354192|ref|NP_000412.2 Keratin 10 G 3 1 gi|4506669|ref|NP_000994.1 Ribosomal protein, large, P1 C 3 1 gi|86836|pir||A34721 Androgen receptor A - human [MASS=98402] C 3 0 gi|4505129|ref|NP_002378.1 Mutated in colorectal cancers C 3 0 gi|2144545|pir||ISHUSS Protein disulfide-isomerase C 3 0 gi|2136280|pir||I38344 Titin B, C 3 0 gi|340419|gb|AAA61308.1 Y box binding protein-1 C 2 3 gi|4502551|ref|NP_001210.1 Calumenin precursor C 2 2 gi|127144|sp|P16475 Myosin light chain alkali, non-muscle isoform C 2 2 gi|136096|sp|P12324 Tropomyosin, cytoskeletal type C 2 2 gi|9951915|ref|NP_000678.1 Adenosylhomocysteinase C 2 1 gi|14165439|ref|NP_002131.2 Heterogeneous nuclear ribonucleoprotein K C 2 1 gi|1346346|sp|P48666|K2CC Keratin, type II cytoskeletal 6C G, C 2 1 gi|125962|sp|P02545 Lamin A C 2 1 gi|4826898|ref|NP_005013.1 C 2 1 gi|136578|sp|P13472 Thymosin beta-10 C 2 1 gi|112959|sp|P12814 Alpha-actinin 1 C 2 0 gi|543959|sp|P35520 Cystathionine beta-synthase C 2 0 gi|4503117|ref|NP_000091.1 Cystatin B C 2 0 gi|4503233|ref|NP_000756.1 Cytochrome P450, subfamily IIIA, polypeptide 7 C 2 0 gi|1346031|sp|P14324 Farnesyl pyrophosphate synthetase C 2 0 gi|4504087|ref|NP_000166.1 Glucose phosphate isomerase C 2 0 gi|120643|sp|P00354 Glyceraldehyde 3-phosphate dehydrogenase, muscle C 2 0 gi|114762|sp|P06748 Nucleophosmin C 2 0 gi|4557797|ref|NP_000260.1 Nucleoside-diphosphate kinase 1 isoform b C 2 0 gi|3153859|gb|AAC17430.1 Thioredoxin delta 3 C 2 0 gi|5453880|ref|NP_006296.1 Acidic (leucine-rich) nuclear phosphoprotein 32 family, memb C1 2 gi|423015|pir||S34426 Nuclease sensitive element-binding protein 1 C 1 2 gi|2117873|pir||S64635 Pyruvate kinase C 1 2 gi|1350681|sp|P36578 60S ribosomal protein L4 C 1 1 gi|28549|emb|CAA23749.1 Alpha globin C 1 1 gi|2134870|pir||S70579 Carnitine O-palmitoyltransferase C 1 1 gi|6005995|ref|NP_009028.1 Clathrin, light polypeptide B (Lcb) isoform b C 1 1 gi|4261795|gb|AAD14095.1 Eukaryotic initiation factor 5A C 1 1 gi|4503477|ref|NP_001950.1 Ekaryotic translation elongation factor 1 beta 2 C 1 1 gi|726098|gb|AAC13869.1 Gutathione S-transferase-P1c C 1 1 gi|123374|sp|P26583|HMG2 High mobility group protein 2 C 1 1 gi|4557701|ref|NP_000413.1 Kratin 17 C 1 1 gi|20178312|sp|O00151 LIM domain protein CLP-36 C 1 1 gi|4506407|ref|NP_002873.1 RAN binding protein 1 C 1 1 gi|4507353|ref|NP_003478.1 RNA-binding protein 56 C 1 1 gi|5902096|ref|NP_008867.1 SMT3 homolog 1 C 1 1 gi|4507357|ref|NP_003555.1 Tansgelin 2 C 1 1 gi|2119925|pir||I54251 Tanslation elongation factor eEF-1 alpha C 1 1 gi|1082871|pir||C53045 Tanslation initiation factor eIF-4C C 1 1 gi|136090|sp|P07951 Tropomyosin beta chain C 1 1 gi|4759212|ref|NP_004598.1 Tbulin-specific chaperone a C 1 1 gi|4502113|ref|NP_001621.1 Anexin VIII C 1 0 gi|437367|gb|AAA64927.1 Atoantigen p69 C 1 0 gi|19482174|ref|NP_003582.2 Cllin 2 B 1 0 gi|30354567|gb|AAH51764.1 Dmage-specific DNA binding protein 1 C 1 0 gi|4758398|ref|NP_004467.1 Flate hydrolase C 1 0 gi|2146952|pir||I39435 Fuctose-bisphosphate aldolase C 1 0 gi|119347|sp|P09104 Gamma enolase C 1 0 gi|4504523|ref|NP_002148.1 Hat shock 10kD protein 1 C 1 0 gi|662841|gb|AAA62175.1 Heat shock 27 kDa protein C 1 0 gi|1346317|sp|P48741 Heat shock 70 kDa protein 7 C 1 0 gi|1708307|sp|P54652 Heat shock-related 70 kDa protein 2 C 1 0 gi|20141538|sp|P31275 Homeobox protein Hox-C12 C 1 0 gi|3913957|sp|O14782 Kinesin-like protein KIF3C C 1 0 gi|5174539|ref|NP_005908.1 Malate dehydrogenase 1 C 1 0 gi|2495074|sp|Q13255 Metabotropic glutamate receptor 1 precursor C 1 0 gi|38569475|ref|NP_002446.2 Metaxin 1 C 1 0 gi|5174525|ref|NP_005900.1 Microtubule-associated protein 1B C 1 0 gi|2507196|sp|P53779 Mitogen activated protein kinase 10 C 1 0 gi|346314|pir||JC1445 Multicatalytic endopeptidase complex chain C2, long splice fo C 1 0 gi|33469989|ref|NP_031387.2 Nidogen 2 C 1 0 gi|23110942|ref|NP_002781.2 Proteasome alpha 5 subunit C 1 0 gi|5031973|ref|NP_005733.1 Protein disulfide isomerase-related protein C 1 0 gi|107499|pir||A39577 Protein-tyrosine kinase JAK1 C 1 0 gi|4504451|ref|NP_002130.1 RNA binding motif protein, X chromosome C 1 0 gi|1082775|pir||A54601 RNA-binding protein AUF1 C 1 0 gi|4506773|ref|NP_002956.1 S100 calcium-binding protein A9 C 1 0 gi|5902102|ref|NP_008869.1 Small nuclear ribonucleoprotein D1 polypeptide (16kD) C 1 0 gi|2136258|pir||I59377 Template activating factor-I, splice form alpha C 1 0 gi|4507669|ref|NP_003286.1 Tumor protein, translationally-controlled 1 C 1 0 gi|20532424|sp|P56704 WNT-3 protein G 1 0 gi|1352419|sp|P20810 Calpain inhibitor C 0 3 gi|40354192|ref|NP_000412.2 Keratin 10 B 0 3 gi|116176|sp|P14635 G2/mitotic-specific cyclin B1 C 0 2 gi|28882049|ref|NP_002905.2 Replication factor C B 0 2 gi|21361374|ref|NP_009168.2 SP140 nuclear body protein C 0 2 gi|4507651|ref|NP_003281.1 Tropomyosin 4 C 0 2 gi|5803227|ref|NP_006817.1 Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase acti C 0 2 gi|4501867|ref|NP_001089.1 Aconitase 2 C 0 1 gi|22538387|ref|NP_005742.4 A-kinase anchor protein 9 isoform 2 C 0 1 gi|4502153|ref|NP_000375.1 Apolipoprotein B precursor C 0 1 gi|13623199|gb|AAH06195.1 ATP citrate lyase, isoform 1 C 0 1 gi|4557447|ref|NP_001261.1 Chromodomain helicase DNA binding protein 1 G 0 1 gi|542785|pir||S41044 Chromosomal protein C 0 1 gi|17375506|sp|Q15054 DNA polymerase delta subunit 3 C 0 1 gi|7661598|ref|NP_056350.1 DNA polymerase-transactivated protein 6 C 0 1 gi|2135011|pir||I53354 DNA-binding protein A C 0 1 gi|1082338|pir||S48061 DNA-directed DNA polymerase beta G 0 1 gi|4503487|ref|NP_001953.1 Ephrin-A5 precursor C 0 1 gi|4503545|ref|NP_001961.1 Eukaryotic translation initiation factor 5A C 0 1 gi|4503725|ref|NP_000792.1 FK506-binding protein 1A C 0 1 gi|388374|gb|AAB27059.1 Flvi-2/bmi-1 B 0 1 gi|2135211|pir||I52825 Gene MAC25 protein C 0 1 gi|133254|sp|P09651 Heterogeneous nuclear ribonucleoprotein A1 C 0 1 gi|5803092|ref|NP_006829.1 Methionine aminopeptidase C 0 1 gi|6166599|sp|P35579 Myosin heavy chain, nonmuscle type A C 0 1 gi|5453760|ref|NP_006147.1 Neural precursor cell expressed, developmentally down-regula C0 1 gi|27262628|ref|NP_002473.2 Nuclear autoantigenic sperm protein C 0 1 gi|32454750|ref|NP_002543.2 Origin recognition complex, subunit 4 C 0 1 gi|7661626|ref|NP_056455.1 PAI-1 mRNA-binding protein C 0 1 gi|21070984|ref|NP_000910.2 Peptidylglycine alpha-amidating monooxygenase C 0 1 gi|20141713|sp|P30044 Peroxiredoxin 5, mitochondrial precursor C 0 1 gi|4506621|ref|NP_000978.1 Ribosomal protein L26 C 0 1 gi|4506625|ref|NP_000981.1 Ribosomal protein L27a C 0 1 gi|4506723|ref|NP_000997.1 Ribosomal protein S3A C 0 1 gi|130998|sp|P02812 Salivary proline-rich protein precursor (Clone CP7) G 0 1 gi|4507635|ref|NP_003926.1 Topoisomerase (DNA) III beta G 0 1 gi|25777711|ref|NP_008861.2 Transcription elongation factor B C 0 1 gi|107909|pir||JC1235 Transcription factor BTF3a C 0 1 gi|6686341|sp|Q15542 Transcription initiation factor TFIID subunit 5 B 0 1 gi|12746552|sp|O15164 Transcription intermediary factor 1-alpha C 0 1 gi|31657111|ref|NP_056380.1 Zinc finger protein 294 G 0 1