When Does Morphology Matter?
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Curriculum Vitae
MAIRIN FRANCESCA ARAGONES BALISI La Brea Tar Pits and Museum, 5801 Wilshire Blvd, Los Angeles, CA 90036 [email protected] | mairinbalisi.com EDUCATION 2018 Ph.D., Ecology and Evolutionary Biology University of California, Los Angeles Dissertation: “Carnivory in the Oligo-Miocene: Resource specialization, competition, and coexistence among North American fossil canids” Advisor: Blaire Van Valkenburgh 2011 M.S., Ecology and Evolutionary Biology University of Michigan, Ann Arbor Thesis: “Dietary behavior and resource partitioning among the carnivorans of Late Pleistocene Rancho La Brea” 2008 B.A., Integrative Biology and Comparative Literature University of California, Berkeley PROFESSIONAL APPOINTMENTS 2019–present Research Affiliate University of Southern California / Natural History Museum of LA County 2018–present National Science Foundation Postdoctoral Research Fellow in Biology La Brea Tar Pits and Museum; University of California, Merced 2014–2018 Graduate Student in Residence, Vertebrate Paleontology Natural History Museum of Los Angeles County PUBLICATIONS ^equal contribution *undergraduate co-author 2020 Balisi MA and B Van Valkenburgh. Iterative evolution of large-bodied hypercarnivory in canids benefits species but not clades. Communications Biology 3:461. (doi:10.1038/s42003-020-01193-9) 2020 Tong, HW, X Chen, B Zhang, B Rothschild, SC White, MA Balisi, and X Wang. Hypercarnivorous teeth and healed injuries in Canis chihliensis from the early Pleistocene Nihewan beds, China, support social hunting for ancestral wolves. PeerJ 8:e9858. (doi:10.7717/peerj.9858) 2020 Dávalos, LM^, RM Austin^, MA Balisi^, RL Begay^, CA Hofman^, ME Kemp^, JR Lund^, C Monroe^, AM Mychajliw^, EA Nelson^, MA Nieves- Colón^, SA Redondo^, S Sabin^, KS Tsosie^, and JM Yracheta^. -
Advanced Morphometric Techniques Applied to The
UNIVERSIDAD POLITÉCNICA DE MADRID ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY TESIS DOCTORAL Yasser Alemán Gómez Ingeniero en Tecnologías Nucleares y Energéticas Máster en Neurociencias Madrid, 2015 DEPARTAMENTO DE INGENIERÍA ELECTRÓNICA ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN PHD THESIS ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY AUTHOR Yasser Alemán Gómez Ing. en Tecnologías Nucleares y Energéticas MSc en Neurociencias ADVISOR Manuel Desco Menéndez, MScE, MD, PhD Madrid, 2015 Departamento de Ingeniería Electrónica Escuela Técnica Superior de Ingenieros de Telecomunicación Universidad Politécnica de Madrid Ph.D. Thesis Advanced morphometric techniques applied to the study of human brain anatomy Tesis doctoral Técnicas avanzadas de morfometría aplicadas al estudio de la anatomía cerebral humana Author: Yasser Alemán Gómez Advisor: Manuel Desco Menéndez Committee: Andrés Santos Lleó Universidad Politécnica de Madrid, Madrid, Spain Javier Pascau Gonzalez-Garzón Universidad Carlos III de Madrid, Madrid, Spain Raymond Salvador Civil FIDMAG – Germanes Hospitalàries, Barcelona, Spain Pablo Campo Martínez-Lage Universidad Autónoma de Madrid, Madrid, Spain Juan Domingo Gispert López Universidad Pompeu Fabra, Barcelona, Spain María Jesús Ledesma Carbayo Universidad Politécnica de Madrid, Madrid, Spain Juan José Vaquero López Universidad Carlos III de Madrid, Madrid, Spain Esta Tesis ha sido desarrollada en el Laboratorio de Imagen Médica de la Unidad de Medicina y Cirugía Experimental del Instituto de Investigación Sanitaria Gregorio Marañón y en colaboración con el Servicio de Psiquiatría del Niño y del Adolescente del Departamento de Psiquiatría del Hospital General Universitario Gregorio Marañón de Madrid, España. Tribunal nombrado por el Sr. -
BIOSC 0805: the HUMAN BODY Department of Biological Sciences University of Pittsburgh
Syllabus: Biosc 0805, The Human Body BIOSC 0805: THE HUMAN BODY Department of Biological Sciences University of Pittsburgh Faculty Zuzana Swigonova, Ph.D. Office: 356 Langley Hall (Third floor, the bridge between Clapp and Langley halls) tel.: 412-624-3288; email: [email protected] Office hours Office hours: Mondays 10:00 – 11:30 AM, 356 Langley Hall Wednesdays 1:00 – 2:30 PM, 356 Langley Hall Office hours by appointment can be arranged by email. Lecture Time Tuesdays & Thursdays, 2:30 – 3:45 PM, 169 Crawford Hall Course objectives This is a course in human biology and physiology for students not majoring in biology. The goal is to provide students with an understanding of fundamental principles of life with an emphasis on the human body. We will start by covering basic biochemistry and cell biology and then move on to the structure and function of human organ systems. An essential part of the course is a discussion of health issues of general interest, such as infectious, autoimmune and neurodegenerative diseases; asthma and allergy; nutrition and health; stem cells research and cloning; and methods of contraception and reproductive technologies. Textbook • Biology. A guide to the natural world, by David Krogh. Pearson, Benjamin Cummings Publishing Company. (ISBN#:0-558-65495-9). This is custom made textbook that includes only the parts of the original edition that are covered in the course. It is available in the Pitt bookstore. • You can also use the full 4th or 3rd edition, however, be aware that the chapters in earlier editions are rearranged in a different order and may be lacking some parts included in the later edition. -
Chapter 32 FOREIGN BODIES of the HEAD, NECK, and SKULL BASE
Foreign Bodies of the Head, Neck, and Skull Base Chapter 32 FOREIGN BODIES OF THE HEAD, NECK, AND SKULL BASE RICHARD J. BARNETT, MD* INTRODUCTION PENETRATING NECK TRAUMA Anatomy Emergency Management Clinical Examination Investigations OPERATIVE VERSUS NONOPERATIVE MANAGEMENT Factors in the Deployed Setting Operative Management Postoperative Care PEDIATRIC INJURIES ORBITAL FOREIGN BODIES SUMMARY CASE PRESENTATIONS Case Study 32-1 Case Study 32-2 Case Study 32-3 Case Study 32-4 Case Study 32-5 Case Study 32-6 *Lieutenant Colonel, Medical Corps, US Air Force; Chief of Facial Plastic Surgery/Otolaryngology, Eglin Air Force Base Department of ENT, 307 Boatner Road, Suite 114, Eglin Air Force Base, Florida 32542-9998 423 Otolaryngology/Head and Neck Combat Casualty Care INTRODUCTION The mechanism and extent of war injuries are sig- other military conflicts. In a study done in Croatia with nificantly different from civilian trauma. Many of the 117 patients who sustained penetrating neck injuries, wounds encountered are unique and not experienced about a quarter of the wounds were from gunshots even at Role 1 trauma centers throughout the United while the rest were from shell or bomb shrapnel.1 The States. Deployed head and neck surgeons must be injury patterns resulting from these mechanisms can skilled at performing an array of evaluations and op- vary widely, and treating each injury requires thought- erations that in many cases they have not performed in ful planning to achieve a successful outcome. a prior setting. During a 6-month tour in Afghanistan, This chapter will address penetrating neck injuries all subspecialties of otolaryngology were encountered: in general, followed specifically by foreign body inju- head and neck (15%), facial plastic/reconstructive ries of the head, face, neck, and skull base. -
Appendix A. Supplementary Material
Appendix A. Supplementary material Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes) David Cernˇ y´ 1,* & Rossy Natale2 1Department of the Geophysical Sciences, University of Chicago, Chicago 60637, USA 2Department of Organismal Biology & Anatomy, University of Chicago, Chicago 60637, USA *Corresponding Author. Email: [email protected] Contents 1 Fossil Calibrations 2 1.1 Calibrations used . .2 1.2 Rejected calibrations . 22 2 Outgroup sequences 30 2.1 Neornithine outgroups . 33 2.2 Non-neornithine outgroups . 39 3 Supplementary Methods 72 4 Supplementary Figures and Tables 74 5 Image Credits 91 References 99 1 1 Fossil Calibrations 1.1 Calibrations used Calibration 1 Node calibrated. MRCA of Uria aalge and Uria lomvia. Fossil taxon. Uria lomvia (Linnaeus, 1758). Specimen. CASG 71892 (referred specimen; Olson, 2013), California Academy of Sciences, San Francisco, CA, USA. Lower bound. 2.58 Ma. Phylogenetic justification. As in Smith (2015). Age justification. The status of CASG 71892 as the oldest known record of either of the two spp. of Uria was recently confirmed by the review of Watanabe et al. (2016). The younger of the two marine transgressions at the Tolstoi Point corresponds to the Bigbendian transgression (Olson, 2013), which contains the Gauss-Matuyama magnetostratigraphic boundary (Kaufman and Brigham-Grette, 1993). Attempts to date this reversal have been recently reviewed by Ohno et al. (2012); Singer (2014), and Head (2019). In particular, Deino et al. (2006) were able to tightly bracket the age of the reversal using high-precision 40Ar/39Ar dating of two tuffs in normally and reversely magnetized lacustrine sediments from Kenya, obtaining a value of 2.589 ± 0.003 Ma. -
A Practical Introduction to Landmark-Based Geometric Morphometrics
A PRACTICAL INTRODUCTION TO LANDMARK-BASED GEOMETRIC MORPHOMETRICS MARK WEBSTER Department of the Geophysical Sciences, University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60637 and H. DAVID SHEETS Department of Physics, Canisius College, 2001 Main Street, Buffalo, NY 14208 ABSTRACT.—Landmark-based geometric morphometrics is a powerful approach to quantifying biological shape, shape variation, and covariation of shape with other biotic or abiotic variables or factors. The resulting graphical representations of shape differences are visually appealing and intuitive. This paper serves as an introduction to common exploratory and confirmatory techniques in landmark-based geometric morphometrics. The issues most frequently faced by (paleo)biologists conducting studies of comparative morphology are covered. Acquisition of landmark and semilandmark data is discussed. There are several methods for superimposing landmark configu- rations, differing in how and in the degree to which among-configuration differences in location, scale, and size are removed. Partial Procrustes superimposition is the most widely used superimposition method and forms the basis for many subsequent operations in geometric morphometrics. Shape variation among superimposed con- figurations can be visualized as a scatter plot of landmark coordinates, as vectors of landmark displacement, as a thin-plate spline deformation grid, or through a principal components analysis of landmark coordinates or warp scores. The amount of difference in shape between two configurations can be quantified as the partial Procrustes distance; and shape variation within a sample can be quantified as the average partial Procrustes distance from the sample mean. Statistical testing of difference in mean shape between samples using warp scores as variables can be achieved through a standard Hotelling’s T2 test, MANOVA, or canonical variates analysis (CVA). -
1 Introduction to Cell Biology
1 Introduction to cell biology 1.1 Motivation Why is the understanding of cell mechancis important? cells need to move and interact with their environment ◦ cells have components that are highly dependent on mechanics, e.g., structural proteins ◦ cells need to reproduce / divide ◦ to improve the control/function of cells ◦ to improve cell growth/cell production ◦ medical appli- cations ◦ mechanical signals regulate cell metabolism ◦ treatment of certain diseases needs understanding of cell mechanics ◦ cells live in a mechanical environment ◦ it determines the mechanics of organisms that consist of cells ◦ directly applicable to single cell analysis research ◦ to understand how mechanical loading affects cells, e.g. stem cell differentation, cell morphology ◦ to understand how mechanically gated ion channels work ◦ an understanding of the loading in cells could aid in developing struc- tures to grow cells or organization of cells more efficiently ◦ can help us to understand macrostructured behavior better ◦ can help us to build machines/sensors similar to cells ◦ can help us understand the biology of the cell ◦ cell growth is affected by stress and mechanical properties of the substrate the cells are in ◦ understanding mechan- ics is important for knowing how cells move and for figuring out how to change cell motion ◦ when building/engineering tissues, the tissue must have the necessary me- chanical properties ◦ understand how cells is affected by and affects its environment ◦ understand how mechanical factors alter cell behavior (gene expression) -
Human Anatomy and Physiology
LECTURE NOTES For Nursing Students Human Anatomy and Physiology Nega Assefa Alemaya University Yosief Tsige Jimma University In collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education 2003 Funded under USAID Cooperative Agreement No. 663-A-00-00-0358-00. Produced in collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education. Important Guidelines for Printing and Photocopying Limited permission is granted free of charge to print or photocopy all pages of this publication for educational, not-for-profit use by health care workers, students or faculty. All copies must retain all author credits and copyright notices included in the original document. Under no circumstances is it permissible to sell or distribute on a commercial basis, or to claim authorship of, copies of material reproduced from this publication. ©2003 by Nega Assefa and Yosief Tsige All rights reserved. Except as expressly provided above, no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage and retrieval system, without written permission of the author or authors. This material is intended for educational use only by practicing health care workers or students and faculty in a health care field. Human Anatomy and Physiology Preface There is a shortage in Ethiopia of teaching / learning material in the area of anatomy and physicalogy for nurses. The Carter Center EPHTI appreciating the problem and promoted the development of this lecture note that could help both the teachers and students. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Ecomorphology of Feeding in Coral Reef Fishes
Ecomorphology of Feeding in Coral Reef Fishes Peter C. Wainwright David R. Bellwood Center for Population Biology Centre for Coral Reef Biodiversity University of California at Davis School of Marine Biology and Aquaculture Davis, California 95616 James Cook University Townsville, Queensland 4811, Australia I. Introduction fish biology. We have attempted to identify generalities, II. How Does Morphology Influence Ecology? the major patterns that seem to cut across phylogenetic III. The Biomechanical Basis of Feeding Performance and geographic boundaries. We begin by constructing IV. Ecological Consequences of Functional a rationale for how functional morphology can be used Morphology to enhance our insight into some long-standing eco- V. Prospectus logical questions. We then review the fundamental me- chanical issues associated with feeding in fishes, and the basic design features of the head that are involved in prey capture and prey processing. This sets the stage I. Introduction for a discussion of how the mechanical properties of fish feeding systems have been modified during reef fish di- nce an observer gets past the stunning coloration, versification. With this background, we consider some O surely no feature inspires wonder in coral reef of the major conclusions that have been drawn from fishes so much as their morphological diversity. From studies of reef fish feeding ecomorphology. Because of large-mouthed groupers, to beaked parrotfish, barbeled space constraints we discuss only briefly the role of goatfish, long-snouted trumpet fish, snaggle-toothed sensory modalities--vision, olfaction, electroreception, tusk fish, tube-mouthed planktivores, and fat-lipped and hearingmbut these are also significant and diverse sweet lips, coral reef fishes display a dazzling array elements of the feeding arsenal of coral reef fishes and of feeding structures. -
Ecological Speciation in Phytophagous Insects
DOI: 10.1111/j.1570-7458.2009.00916.x MINI REVIEW Ecological speciation in phytophagous insects Kei W. Matsubayashi1, Issei Ohshima2 &PatrikNosil3,4* 1Department of Natural History Sciences, Hokkaido University, Sapporo 060-0810, Japan, 2Department of Evolutionary Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan, 3Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309, USA, and 4Wissenschaftskolleg, Institute for Advanced Study, Berlin, 14193, Germany Accepted: 7 August 2009 Key words: host adaptation, genetics of speciation, natural selection, reproductive isolation, herbivo- rous insects Abstract Divergent natural selection has been shown to promote speciation in a wide range of taxa. For exam- ple, adaptation to different ecological environments, via divergent selection, can result in the evolution of reproductive incompatibility between populations. Phytophagous insects have been at the forefront of these investigations of ‘ecological speciation’ and it is clear that adaptation to differ- ent host plants can promote insect speciation. However, much remains unknown. For example, there is abundant variability in the extent to which divergent selection promotes speciation, the sources of divergent selection, the types of reproductive barriers involved, and the genetic basis of divergent adaptation. We review these factors here. Several findings emerge, including the observation that although numerous different sources of divergent selection and reproductive isolation can be involved in insect speciation, their order of evolution and relative importance are poorly understood. Another finding is that the genetic basis of host preference and performance can involve loci of major effect and opposing dominance, factors which might facilitate speciation in the face of gene flow. In addition, we raise a number of other recent issues relating to phytophagous insect speciation, such as alternatives to ecological speciation, the geography of speciation, and the molecular signatures of spe- ciation.