Opiliones, Laniatores)
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The Coume Ouarnède System, a Hotspot of Subterranean Biodiversity in Pyrenees (France)
diversity Article The Coume Ouarnède System, a Hotspot of Subterranean Biodiversity in Pyrenees (France) Arnaud Faille 1,* and Louis Deharveng 2 1 Department of Entomology, State Museum of Natural History, 70191 Stuttgart, Germany 2 Institut de Systématique, Évolution, Biodiversité (ISYEB), UMR7205, CNRS, Muséum National d’Histoire Naturelle, Sorbonne Université, EPHE, 75005 Paris, France; [email protected] * Correspondence: [email protected] Abstract: Located in Northern Pyrenees, in the Arbas massif, France, the system of the Coume Ouarnède, also known as Réseau Félix Trombe—Henne Morte, is the longest and the most complex cave system of France. The system, developed in massive Mesozoic limestone, has two distinct resur- gences. Despite relatively limited sampling, its subterranean fauna is rich, composed of a number of local endemics, terrestrial as well as aquatic, including two remarkable relictual species, Arbasus cae- cus (Simon, 1911) and Tritomurus falcifer Cassagnau, 1958. With 38 stygobiotic and troglobiotic species recorded so far, the Coume Ouarnède system is the second richest subterranean hotspot in France and the first one in Pyrenees. This species richness is, however, expected to increase because several taxonomic groups, like Ostracoda, as well as important subterranean habitats, like MSS (“Milieu Souterrain Superficiel”), have not been considered so far in inventories. Similar levels of subterranean biodiversity are expected to occur in less-sampled karsts of central and western Pyrenees. Keywords: troglobionts; stygobionts; cave fauna Citation: Faille, A.; Deharveng, L. The Coume Ouarnède System, a Hotspot of Subterranean Biodiversity in Pyrenees (France). Diversity 2021, 1. Introduction 13 , 419. https://doi.org/10.3390/ Stretching at the border between France and Spain, the Pyrenees are known as one d13090419 of the subterranean hotspots of the world [1]. -
A Stable Phylogenomic Classification of Travunioidea (Arachnida, Opiliones, Laniatores) Based on Sequence Capture of Ultraconserved Elements
A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Derkarabetian, Shahan, James Starrett, Nobuo Tsurusaki, Darrell Ubick, Stephanie Castillo, and Marshal Hedin. 2018. “A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements.” ZooKeys (760): 1-36. doi:10.3897/zookeys.760.24937. http://dx.doi.org/10.3897/zookeys.760.24937. Published Version doi:10.3897/zookeys.760.24937 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:37298544 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA A peer-reviewed open-access journal ZooKeys 760: 1–36 (2018) A stable phylogenomic classification of Travunioidea... 1 doi: 10.3897/zookeys.760.24937 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research A stable phylogenomic classification of Travunioidea (Arachnida, Opiliones, Laniatores) based on sequence capture of ultraconserved elements Shahan Derkarabetian1,2,7 , James Starrett3, Nobuo Tsurusaki4, Darrell Ubick5, Stephanie Castillo6, Marshal Hedin1 1 Department of Biology, San Diego State University, San -
Anatomically Modern Carboniferous Harvestmen Demonstrate Early Cladogenesis and Stasis in Opiliones
ARTICLE Received 14 Feb 2011 | Accepted 27 Jul 2011 | Published 23 Aug 2011 DOI: 10.1038/ncomms1458 Anatomically modern Carboniferous harvestmen demonstrate early cladogenesis and stasis in Opiliones Russell J. Garwood1, Jason A. Dunlop2, Gonzalo Giribet3 & Mark D. Sutton1 Harvestmen, the third most-diverse arachnid order, are an ancient group found on all continental landmasses, except Antarctica. However, a terrestrial mode of life and leathery, poorly mineralized exoskeleton makes preservation unlikely, and their fossil record is limited. The few Palaeozoic species discovered to date appear surprisingly modern, but are too poorly preserved to allow unequivocal taxonomic placement. Here, we use high-resolution X-ray micro-tomography to describe two new harvestmen from the Carboniferous (~305 Myr) of France. The resulting computer models allow the first phylogenetic analysis of any Palaeozoic Opiliones, explicitly resolving both specimens as members of different extant lineages, and providing corroboration for molecular estimates of an early Palaeozoic radiation within the order. Furthermore, remarkable similarities between these fossils and extant harvestmen implies extensive morphological stasis in the order. Compared with other arachnids—and terrestrial arthropods generally—harvestmen are amongst the first groups to evolve fully modern body plans. 1 Department of Earth Science and Engineering, Imperial College, London SW7 2AZ, UK. 2 Museum für Naturkunde at the Humboldt University Berlin, D-10115 Berlin, Germany. 3 Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology, Harvard University, Cambridge, Massachusetts 02138, USA. Correspondence and requests for materials should be addressed to R.J.G. (email: [email protected]) and for phylogenetic analysis, G.G. (email: [email protected]). -
Segmentation and Tagmosis in Chelicerata
Arthropod Structure & Development 46 (2017) 395e418 Contents lists available at ScienceDirect Arthropod Structure & Development journal homepage: www.elsevier.com/locate/asd Segmentation and tagmosis in Chelicerata * Jason A. Dunlop a, , James C. Lamsdell b a Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrasse 43, D-10115 Berlin, Germany b American Museum of Natural History, Division of Paleontology, Central Park West at 79th St, New York, NY 10024, USA article info abstract Article history: Patterns of segmentation and tagmosis are reviewed for Chelicerata. Depending on the outgroup, che- Received 4 April 2016 licerate origins are either among taxa with an anterior tagma of six somites, or taxa in which the ap- Accepted 18 May 2016 pendages of somite I became increasingly raptorial. All Chelicerata have appendage I as a chelate or Available online 21 June 2016 clasp-knife chelicera. The basic trend has obviously been to consolidate food-gathering and walking limbs as a prosoma and respiratory appendages on the opisthosoma. However, the boundary of the Keywords: prosoma is debatable in that some taxa have functionally incorporated somite VII and/or its appendages Arthropoda into the prosoma. Euchelicerata can be defined on having plate-like opisthosomal appendages, further Chelicerata fi Tagmosis modi ed within Arachnida. Total somite counts for Chelicerata range from a maximum of nineteen in Prosoma groups like Scorpiones and the extinct Eurypterida down to seven in modern Pycnogonida. Mites may Opisthosoma also show reduced somite counts, but reconstructing segmentation in these animals remains chal- lenging. Several innovations relating to tagmosis or the appendages borne on particular somites are summarised here as putative apomorphies of individual higher taxa. -
Geological History and Phylogeny of Chelicerata
Arthropod Structure & Development 39 (2010) 124–142 Contents lists available at ScienceDirect Arthropod Structure & Development journal homepage: www.elsevier.com/locate/asd Review Article Geological history and phylogeny of Chelicerata Jason A. Dunlop* Museum fu¨r Naturkunde, Leibniz Institute for Research on Evolution and Biodiversity at the Humboldt University Berlin, Invalidenstraße 43, D-10115 Berlin, Germany article info abstract Article history: Chelicerata probably appeared during the Cambrian period. Their precise origins remain unclear, but may Received 1 December 2009 lie among the so-called great appendage arthropods. By the late Cambrian there is evidence for both Accepted 13 January 2010 Pycnogonida and Euchelicerata. Relationships between the principal euchelicerate lineages are unre- solved, but Xiphosura, Eurypterida and Chasmataspidida (the last two extinct), are all known as body Keywords: fossils from the Ordovician. The fourth group, Arachnida, was found monophyletic in most recent studies. Arachnida Arachnids are known unequivocally from the Silurian (a putative Ordovician mite remains controversial), Fossil record and the balance of evidence favours a common, terrestrial ancestor. Recent work recognises four prin- Phylogeny Evolutionary tree cipal arachnid clades: Stethostomata, Haplocnemata, Acaromorpha and Pantetrapulmonata, of which the pantetrapulmonates (spiders and their relatives) are probably the most robust grouping. Stethostomata includes Scorpiones (Silurian–Recent) and Opiliones (Devonian–Recent), while -
The Impact of Lampenflora on Cave-Dwelling Arthropods in Gunungsewu Karst, Java, Indonesia
Biosaintifika 10 (2) (2018) 275-283 Biosaintifika Journal of Biology & Biology Education http://journal.unnes.ac.id/nju/index.php/biosaintifika The Impact of Lampenflora on Cave-dwelling Arthropods in Gunungsewu Karst, Java, Indonesia Isma Dwi Kurniawan1,3, Cahyo Rahmadi2,3, Tiara Esti Ardi3, Ridwan Nasrullah3, Muhammad Iqbal Willyanto3, Andy Setiabudi4 DOI: http://dx.doi.org/10.15294/biosaintifika.v10i2.13991 1Department of Biology, Faculty of Science and Technology, UIN Sunan Gunung Djati Bandung, Indonesia 2Museum Zoologicum Bogoriense, Indonesian Institute of Science, Indonesia 3Indonesian Speleological Society, Indonesia 4Acintyacuyata Speleological Club (ASC), Indonesia History Article Abstract Received 6 April 2018 The development of wild caves into show caves is required an installation of electric Approved 18 June 2018 lights along the cave passages for illumination and decoration purposes for tourist at- Published 30 August 2018 traction. The presence of artificial lights can stimulate the growth of photosynthetic organisms such as lampenflora and alter the typical cave ecosystem. The study was Keywords aimed to detect the effect of lampenflora on cave-dwelling arthropods community. Conservation; Gunung- Four caves were sampled during the study, 2 caves are show caves with the exist- sewu; Karst; Show cave ence of lampenflora and 2 others are wild caves without lampenflora. Arthropods sampling were conducted by hand collecting, pitfall trap, bait trap and berlese ex- tractor. Lampenflora comprises of algae (Phycophyta), moss (Bryophyta) and fern (Pteridophyta) grow mostly around white light lamps. Richness, diversity, and even- ness indices of Arthropods are higher in caves with the existence of lampenflora compared to caves without lampeflora. This study clearly shows that the presence of lampenflora can increase Arthropods diversity and suppress dominancy of com- mon Arthropods species in caves, also increasing the relative abundance of preda- tors. -
Dimensions of Biodiversity
Dimensions of Biodiversity NATIONAL SCIENCE FOUNDATION CO-FUNDED BY 2010–2015 PROJECTS Introduction 4 Project Abstracts 2015 8 Project Updates 2014 30 Project Updates 2013 42 Project Updates 2012 56 Project Updates 2011 72 Project Updates 2010 88 FRONT COVER IMAGES A B f g h i k j C l m o n q p r D E IMAGE CREDIT THIS PAGE FRONT COVER a MBARI & d Steven Haddock f Steven Haddock k Steven Haddock o Carolyn Wessinger Peter Girguis e Carolyn g Erin Tripp l Lauren Schiebelhut p Steven Litaker b James Lendemer Wessinger h Marty Condon m Lawrence Smart q Sahand Pirbadian & c Matthew L. Lewis i Marty Condon n Verity Salmon Moh El-Naggar j Niklaus Grünwald r Marty Condon FIELD SITES Argentina France Singapore Australia French Guiana South Africa Bahamas French Polynesia Suriname Belize Germany Spain Bermuda Iceland Sweden Bolivia Japan Switzerland Brazil Madagascar Tahiti Canada Malaysia Taiwan China Mexico Thailand Colombia Norway Trinidad Costa Rica Palau United States Czech Republic Panama United Kingdom Dominican Peru Venezuela Republic Philippines Labrador Sea Ecuador Poland North Atlantic Finland Puerto Rico Ocean Russia North Pacific Ocean Saudi Arabia COLLABORATORS Argentina Finland Palau Australia France Panama Brazil Germany Peru Canada Guam Russia INTERNATIONAL PARTNERS Chile India South Africa China Brazil China Indonesia Sri Lanka (NSFC) (FAPESP) Colombia Japan Sweden Costa Rica Kenya United Denmark Malaysia Kingdom Ecuador Mexico ACKNOWLEDGMENTS Many NSF staff members, too numerous to We thank Mina Ta and Matthew Pepper for mention individually, assisted in the development their graphic design contribution to the abstract and implementation of the Dimensions of booklet. -
Opiliones: Laniatores: Epedanidae), a New Genus from Hainan Island, South China Sea
RAFFLES BULLETIN OF ZOOLOGY 2015 Taxonomy & Systematics RAFFLES BULLETIN OF ZOOLOGY 63: 97–109 Date of publication: 15 May 2015 http://zoobank.org/urn:lsid:zoobank.org:pub:447E26D1-ECC7-42AB-A9DB-D86888AA854E Gasterapophus (Opiliones: Laniatores: Epedanidae), a new genus from Hainan Island, South China Sea Chao Zhang1, Wei-Guang Lian2* & Feng Zhang1 Abstract. Gasterapophus, new genus (Opiliones: Laniatores: Epedanidae) and two species are newly described from Hainan Island, China, G. singulus, new species and G. binatus, new species. The genital characters dictate that the new genus should be placed in Epedanidae. The new genus is characterised by: (a) penis simple, ventral plate conspicuously extended, stylar lobe entirely surrounding the stylus, basal sac partly sinking into the truncus; (b) stigmatic area of male with large apophysis; (c) ocularium, scutum and free tergites unarmed; (d) coxa IV widened. Key words. Arachnida, taxonomy, harvestmen, genitalia INTRODUCTION distinguished from other genera by the eyes placed in two widely separated mounds (Kury, 2009). The family Epedanidae Sørensen, 1886 is endemic to Asia, with the greatest abundance in Southeast Asia, e.g., Acrobuninae contains six genera, i.e., Acrobunus Thorell, Philippines, Indonesia, Thailand, and Malaysia (Kury, 2007). 1891, Anacrobunus Roewer, 1927, Harpagonellus Roewer, Most genera and species were found and named by Roewer 1927, Heterobiantes Roewer, 1912, Metacrobunus Roewer, (1923, 1938) and much work has been done on this family in 1915 and Paracrobunus Suzuki, 1977. Members of this recent years (Suzuki, 1969, 1976, 1977, 1982, 1985a; Zhu & subfamily have dense scopulae in tarsi III–IV and eyes Lian, 2006; Kury, 2008; Lian et al., 2008; Zhang & Zhang, placed laterally at the base of a well-marked common 2010; Lian et al., 2011; Zhang & Zhang, 2012). -
Phylogenetic Analysis of Phalangida (Arachnida, Opiliones) Using Two Nuclear Protein-Encoding Genes Supports Monophyly of Palpatores
2001. The Journal of Arachnology 29:189±200 PHYLOGENETIC ANALYSIS OF PHALANGIDA (ARACHNIDA, OPILIONES) USING TWO NUCLEAR PROTEIN-ENCODING GENES SUPPORTS MONOPHYLY OF PALPATORES Jeffrey W. Shultz: Department of Entomology, University of Maryland, College Park, Maryland 20742 USA Jerome C. Regier: Center for Agricultural Biotechnology, University of Maryland Biotechnology Institute, College Park, Maryland 20742 USA ABSTRACT. Recent phylogenetic studies of Opiliones have shown that Cyphophthalmi and Phalangida (5 Palpatores 1 Laniatores) are sister groups, but higher relationships within Phalangida remain contro- versial. Current debate focuses on whether Palpatores (5 Caddoidea 1 Phalangioidea 1 Ischyropsalidoidea 1 Troguloidea) is monophyletic or paraphyletic, with Ischyropsalidoidea 1 Troguloidea (5 Dyspnoi) being more closely related to Laniatores. The latter hypothesis was favored in recent combined studies of ri- bosomal DNA and morphology. Here higher relationships within Phalangida are examined using two nuclear protein-encoding genes, elongation factor-1a (EF-1a) and RNA polymerase II (Pol II), from 27 opilion species representing seven superfamilies. Cyphophthalmi was used as the outgroup. Nucleotide and inferred amino acid sequences were analyzed using maximum-parsimony and maximum-likelihood methods. All analyses recovered Palpatores as the monophyletic sister group to Laniatores with moderate to strong empirical support. Most palpatorean superfamilies were also recovered, but relationships among them were ambiguous or weakly -
Epedanidae Sørensen, 1886 Adriano B
29859_U04.qxd 8/18/06 12:29 PM Page 188 188 Taxonomy . Carapace without sexual dimorphism, not affecting space of area I. Area II in- vading area I until touching the scutal groove (Figure 4.25b). Armature of mesotergum mostly present as very high and sharp spine. Ocularium mostly low and depressed in the middle. Area I usually with a pair of short spines. Femur IV with a few distal prolateral spines. 3 2. Tarsal claws III–IV pectinate; rich ornamentation of scutum, mainly with con- trasting white granules; all femora substraight and smooth elongate; scutal area III always with a pair of short spines.. Heterocranainae . Tarsal claws III–IV smooth; scutum remarkably smooth; femur IV short and sig- moid with tubercles all along (Figure 4.25k); scutal area III mostly unarmed, paired spines present only in a few species.. Prostygninae 3. All pedipalpal segments, specially femur and patella, slender and much elongate, tibia/tarsus forming subchela. Stygnicranainae . Pedipalpal segments short (Figures 4.25d,e), tibia and tarsus not forming sub- chela. Cranainae Distribution: Mainly northern South America (except for two species in Panama and Costa Rica). Most of the diversity in the family (Colombia and Ecuador) seems to be related to the cloud forest, from 500 to 3,500 m high, where it merges with subparamo vegetation. Perhaps cranaids show a high endemicity related to small mountain areas, as do gonyleptids. Some species were recorded from paramos be- tween 4,000 and 5,000 m where the soil is sandy and covered with low shrubs and grass, and others from the Amazonian rain-forest lowlands (Peru and Brazil) and upland rain forest (Venezuela and Colombia) where the vegetation is exuberant. -
Arthropod Phylogeny Based on Eight Molecular Loci and Morphology
letters to nature melanogaster (U37541), mosquito Anopheles quadrimaculatus (L04272), mosquito arthropods revealed by the expression pattern of Hox genes in a spider. Proc. Natl Acad. Sci. USA 95, Anopheles gambiae (L20934), med¯y Ceratitis capitata (CCA242872), Cochliomyia homi- 10665±10670 (1998). nivorax (AF260826), locust Locusta migratoria (X80245), honey bee Apis mellifera 24. Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTALW: Improving the sensitivity of progressive (L06178), brine shrimp Artemia franciscana (X69067), water ¯ea Daphnia pulex multiple sequence alignment through sequence weighting, position-speci®c gap penalties and weight (AF117817), shrimp Penaeus monodon (AF217843), hermit crab Pagurus longicarpus matrix choice. Nucleic Acids Res. 22, 4673±4680 (1994). (AF150756), horseshoe crab Limulus polyphemus (AF216203), tick Ixodes hexagonus 25. Foster, P. G. & Hickey, D. A. Compositional bias may affect both DNA-based and protein-based (AF081828), tick Rhipicephalus sanguineus (AF081829). For outgroup comparison, phylogenetic reconstructions. J. Mol. Evol. 48, 284±290 (1999). sequences were retrieved for the annelid Lumbricus terrestris (U24570), the mollusc 26. Castresana, J. Selection of conserved blocks from multiple alignments for their use in phylogenetic Katharina tunicata (U09810), the nematodes Caenorhabditis elegans (X54252), Ascaris analysis. Mol. Biol. Evol. 17, 540±552 (2000). suum (X54253), Trichinella spiralis (AF293969) and Onchocerca volvulus (AF015193), and 27. Muse, S. V. & Kosakovsky Pond, S. L. Hy-Phy 0.7 b (North Carolina State Univ., Raleigh, 2000). the vertebrate species Homo sapiens (J01415) and Xenopus laevis (M10217). Additional 28. Strimmer, K. & von Haeseler, A. Quartet puzzlingÐa quartet maximum-likelihood method for sequences were analysed for gene arrangements: Boophilus microplus (AF110613), Euhadra reconstructing tree topologies. -
Arachnida: Opiliones: Laniatores) En Cuba
Sistemática y conservación de la familia Biantidae (Arachnida: Opiliones: Laniatores) en Cuba Aylin Alegre Barroso Sistemática y conservación de la familia Biantidae (Arachnida: Opiliones: Laniatores) en Cuba Aylin Alegre Barroso Tesis doctoral Junio 2019 Foto de portada: Tomada por: Sistemática y conservación de la familia Biantidae (Arachnida: Opiliones: Laniatores) en Cuba Aylin Alegre Barroso Tesis presentada para aspirar al grado de DOCTORA POR LA UNIVERSIDAD DE ALICANTE Doctorado en Conservación y Restauración de Ecosistemas Dirigida por: Dr. Germán M. López Iborra (UA, España) Resumen El análisis de la morfología externa y genital masculina de los biántidos cubanos permitió realizar por primera vez un estudio filogenético que sirvió para elaborar una nueva propuesta de la sistemática del grupo. Además se actualizaron las descripciones taxónómicas que incluyen una detallada caracterización de la morfología genital masculina. La familia Biantidae en Cuba contiene 20 especies, ocho de ellas constituyen nuevas especies para la ciencia. Se propone a Manahunca silhavyi Avram, 1977, como nuevo sinónimo posterior de Manahunca bielawskii Šilhavý, 1973. A partir del estudio filogenético se redefinen los límites de Stenostygninae Roewer, 1913, restaurando el concepto original de Caribbiantinae Šilhavý, 1973, status revalidado, para agrupar a todas las especies de biántidos antillanos, lo que excluye al taxón Suramericano Stenostygnus pusio Simon, 1879. Los géneros cubanos Caribbiantes Šilhavý, 1973, Manahunca Šilhavý, 1973 y Negreaella Avram,