Documenting Plant Diversity in Central French Guiana: the First Step Toward Understanding Biocomplexity
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Toward a Phylogenetic-Based Generic Classification of Neotropical Lecythidaceae— I
Phytotaxa 203 (2): 085–121 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.203.2.1 Toward a phylogenetic-based Generic Classification of Neotropical Lecythidaceae— I. Status of Bertholletia, Corythophora, Eschweilera and Lecythis YA-YI HUANG1, SCOTT A. MORI2 & LAWRENCE M. KELLY3 1Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Road, Taipei 11529, Taiwan; [email protected] 2Author for correspondence: Institute of Systematic Botany, The New York Botanical Garden, Bronx, New York, USA 10458-5126; [email protected] 3The New York Botanical Garden, Bronx, New York, USA 10458-5126; [email protected] Abstract Lecythidaceae subfam. Lecythidoideae is limited to the Neotropics and is the only naturally occurring subfamily of Le- cythidaceae in the New World. A subset of genera with zygomorphic flowers—Bertholletia, Corythophora, Eschweilera and Lecythis—comprises a group of about 125 species called the Bertholletia clade. A previous study based on plastid ndhF and trnL-F genes supported the monophyly of Corythophora but suggested that Eschweilera and Lecythis are not mono- phyletic. Using this study as a baseline, we sampled more taxa and sequenced more loci to address the taxonomic problems of the ambiguous genera and to determine relationships within the Bertholletia clade. Our results support the monophyly of the Bertholletia clade as previously circumscribed. In addition, Corythophora is monophyletic, and the two accessions of Bertholletia excelsa come out together on the tree. Results of the simultaneous analysis do not support the monophyly of Lecythis or Eschweilera. -
Dimensions of Biodiversity
Dimensions of Biodiversity NATIONAL SCIENCE FOUNDATION CO-FUNDED BY 2010–2015 PROJECTS Introduction 4 Project Abstracts 2015 8 Project Updates 2014 30 Project Updates 2013 42 Project Updates 2012 56 Project Updates 2011 72 Project Updates 2010 88 FRONT COVER IMAGES A B f g h i k j C l m o n q p r D E IMAGE CREDIT THIS PAGE FRONT COVER a MBARI & d Steven Haddock f Steven Haddock k Steven Haddock o Carolyn Wessinger Peter Girguis e Carolyn g Erin Tripp l Lauren Schiebelhut p Steven Litaker b James Lendemer Wessinger h Marty Condon m Lawrence Smart q Sahand Pirbadian & c Matthew L. Lewis i Marty Condon n Verity Salmon Moh El-Naggar j Niklaus Grünwald r Marty Condon FIELD SITES Argentina France Singapore Australia French Guiana South Africa Bahamas French Polynesia Suriname Belize Germany Spain Bermuda Iceland Sweden Bolivia Japan Switzerland Brazil Madagascar Tahiti Canada Malaysia Taiwan China Mexico Thailand Colombia Norway Trinidad Costa Rica Palau United States Czech Republic Panama United Kingdom Dominican Peru Venezuela Republic Philippines Labrador Sea Ecuador Poland North Atlantic Finland Puerto Rico Ocean Russia North Pacific Ocean Saudi Arabia COLLABORATORS Argentina Finland Palau Australia France Panama Brazil Germany Peru Canada Guam Russia INTERNATIONAL PARTNERS Chile India South Africa China Brazil China Indonesia Sri Lanka (NSFC) (FAPESP) Colombia Japan Sweden Costa Rica Kenya United Denmark Malaysia Kingdom Ecuador Mexico ACKNOWLEDGMENTS Many NSF staff members, too numerous to We thank Mina Ta and Matthew Pepper for mention individually, assisted in the development their graphic design contribution to the abstract and implementation of the Dimensions of booklet. -
Instituto Nacional De Pesquisas Da Amazônia – Inpa
INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA – INPA PROGRAMA DE PÓS-GRADUAÇÃO EM ECOLOGIA PRODUÇÃO DE ISOPRENÓIDES E ESTRATÉGIAS DE ALOCAÇÃO DE RECURSOS EM ESPÉCIES ARBÓREAS DA AMAZÔNIA CENTRAL MICHELLE ROBIN CARNEIRO DE REZENDE Manaus, Amazonas Setembro/2020 1 MICHELLE ROBIN CARNEIRO DE REZENDE PRODUÇÃO DE ISOPRENÓIDES E ESTRATÉGIAS DE ALOCAÇÃO DE RECURSOS EM ESPÉCIES ARBÓREAS DA AMAZÔNIA CENTRAL Orientadora: Juliana Schietti de Almeida Co-orientadora: Eliane Gomes Alves Dissertação apresentada ao Instituto Nacional de Pesquisas da Amazônia como parte dos requisitos para obtenção do título de Mestre em Biologia (Ecologia). Manaus, Amazonas Setembro/2020 2 BANCA EXAMINADORA DA DEFESA ORAL PÚBLICA 3 FICHA CATALOGRÁFICA SINOPSE Estudou-se a correlação entre os espectros da economia de carbono - gerados a partir de traços funcionais medidos no nível da folha, da madeira, e da planta-inteira - com a emissão e o estoque de compostos secundários da classe dos isoprenóides, em 27 espécies de árvores da Amazônia Central. Palavras-chave: compostos secundários, traços funcionais, estratégias de plantas, isopreno, COVBs, floresta Amazônica 4 AGRADECIMENTOS A presente dissertação não teria sido possível sem o auxílio e a contribuição de muitas pessoas, às quais sou imensamente grata. Aos meus pais, por todo o carinho e amor, por sempre me apoiarem e me incentivarem na busca de novos sonhos e desafios. Às minhas orientadoras, Juliana Schietti e Eliane Alves, pela orientação e todo o apoio, incentivo, aprendizado e crescimento, tanto profissional quanto pessoal, ao longo desse período de mestrado; pela oportunidade de descobrir, e de me encantar, com a Ecologia Funcional e os Compostos Orgânicos Voláteis Biogênicos, e também de conhecer e trabalhar em lugares incríveis, como o sítio da torre ATTO e o Instituto Max Planck de Biogeoquímica. -
The Hyperdominant Tropical Tree Eschweilera Coriacea (Lecythidaceae) Shows Higher Genetic Heterogeneity Than Sympatric Eschweilera Species in French Guiana
Plant Ecology and Evolution 153 (1): 67–81, 2020 https://doi.org/10.5091/plecevo.2020.1565 REGULAR PAPER The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana Myriam Heuertz1,*, Henri Caron1,2, Caroline Scotti-Saintagne3, Pascal Pétronelli2, Julien Engel4,5, Niklas Tysklind2, Sana Miloudi1, Fernanda A. Gaiotto6, Jérôme Chave7, Jean-François Molino5, Daniel Sabatier5, João Loureiro8 & Katharina B. Budde1,9 1Univ. Bordeaux, INRAE, Biogeco, FR-33610 Cestas, France 2INRAE, Cirad, Ecofog, GF-97310 Kourou, French Guiana 3INRAE, URFM, FR-84914 Avignon, France 4International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL-33199, USA 5Université de Montpellier, IRD, Cirad, CNRS, INRAE, AMAP, FR-34398 Montpellier, France 6Universidade Estadual de Santa Cruz, Centro de Biotecnologia e Genética, Ilhéus, BR-45662-901, Bahia, Brazil 7Université Paul Sabatier Toulouse, CNRS, EBD, FR-31062, Toulouse, France 8University of Coimbra, Centre for Functional Ecology, Department of Life Sciences, PT-3000-456 Coimbra, Portugal 9Present address: University of Copenhagen, Forest, Nature and Biomass, Rolighedsvej 23, DK-1958 Frederiksberg C, Denmark *Corresponding author: [email protected] Background and aims – The evolutionary history of Amazonia’s hyperabundant tropical tree species, also known as “hyperdominant” species, remains poorly investigated. We assessed whether the hyperdominant Eschweilera coriacea (DC.) S.A.Mori (Lecythidaceae) represents a single genetically cohesive species, and how its genetic constitution relates to other species from the same clade with which it occurs sympatrically in French Guiana. Methods – We sampled 152 individuals in nine forest sites in French Guiana, representing 11 species of the genus Eschweilera all belonging to the Parvifolia clade, with emphasis on E. -
Lowland Vegetation of Tropical South America -- an Overview
Lowland Vegetation of Tropical South America -- An Overview Douglas C. Daly John D. Mitchell The New York Botanical Garden [modified from this reference:] Daly, D. C. & J. D. Mitchell 2000. Lowland vegetation of tropical South America -- an overview. Pages 391-454. In: D. Lentz, ed. Imperfect Balance: Landscape Transformations in the pre-Columbian Americas. Columbia University Press, New York. 1 Contents Introduction Observations on vegetation classification Folk classifications Humid forests Introduction Structure Conditions that suppport moist forests Formations and how to define them Inclusions and archipelagos Trends and patterns of diversity in humid forests Transitions Floodplain forests River types Other inundated forests Phytochoria: Chocó Magdalena/NW Caribbean Coast (mosaic type) Venezuelan Guayana/Guayana Highland Guianas-Eastern Amazonia Amazonia (remainder) Southern Amazonia Transitions Atlantic Forest Complex Tropical Dry Forests Introduction Phytochoria: Coastal Cordillera of Venezuela Caatinga Chaco Chaquenian vegetation Non-Chaquenian vegetation Transitional vegetation Southern Brazilian Region Savannas Introduction Phytochoria: Cerrado Llanos of Venezuela and Colombia Roraima-Rupununi savanna region Llanos de Moxos (mosaic type) Pantanal (mosaic type) 2 Campo rupestre Conclusions Acknowledgments Literature Cited 3 Introduction Tropical lowland South America boasts a diversity of vegetation cover as impressive -- and often as bewildering -- as its diversity of plant species. In this chapter, we attempt to describe the major types of vegetation cover in this vast region as they occurred in pre- Columbian times and outline the conditions that support them. Examining the large-scale phytogeographic regions characterized by each major cover type (see Fig. I), we provide basic information on geology, geological history, topography, and climate; describe variants of physiognomy (vegetation structure) and geography; discuss transitions; and examine some floristic patterns and affinities within and among these regions. -
Toward a Phylogenetic-Based Generic Classification of Neotropical Lecythidaceae— II
Phytotaxa 203 (2): 122–137 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.203.2.2 Toward a Phylogenetic-based Generic Classification of Neotropical Lecythidaceae— II. Status of Allantoma, Cariniana, Couratari, Couroupita, Grias and Gustavia SCOTT A. MORI1, 4, NATHAN P. SMITH1, YA-YI HUANG2, GHILLEAN T. PRANCE3, LAWRENCE M. KELLY1 & CAROL CAROLLO MATOS1 1Institute of Systematic Botany, The New York Botanical Garden, Bronx, New York. USA 10458-5126 2Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Road, Taipei 11529, Taiwan 3Royal Botanic Gardens, Kew, Richmond, Surrey UK TW9 3AB. 4Author for correspondence; e-mail: [email protected]. Abstract The morphological features of all clades of neotropical Lecythidaceae subfam. Lecythidoideae (Brazil nut family) with actinomorphic androecia (Allantoma, Grias, Gustavia) as well as three clades with zygomorphic androecia (Cariniana, Couroupita, and Couratari) are described. These clades are those that were recovered by a phylogeny based on molecular data, and all, except Allantoma and Cariniana, have been recognized as genera without changes for over a hundred years. The latter two genera have recently been circumscribed such that they now also represent monophyletic clades; thus, the authors conclude that the clades discussed in this paper represent well-defined genera based on both morphological and molecular data. Morphological descriptions of these six clades of the non-Bertholletia clade are included and a key to the 16 clades of New World Lecythidaceae is presented. Introduction The use of anatomical, morphological, and molecular data to produce cladograms has advanced the study of neotropical Lecythidaceae. -
WRA Species Report
Family: Lecythidaceae Taxon: Couroupita guianensis Synonym: Couratari pedicellaris Rizzini Common Name: cannonball tree Couroupita acreensis R.Knuth bala de cañon Couroupita antillana Miers Couroupita froesii R.Knuth Questionaire : current 20090513 Assessor: Assessor Designation: L Status: Assessor Approved Data Entry Person: Assessor WRA Score 1 101 Is the species highly domesticated? y=-3, n=0 n 102 Has the species become naturalized where grown? y=1, n=-1 103 Does the species have weedy races? y=1, n=-1 201 Species suited to tropical or subtropical climate(s) - If island is primarily wet habitat, then (0-low; 1-intermediate; 2- High substitute "wet tropical" for "tropical or subtropical" high) (See Appendix 2) 202 Quality of climate match data (0-low; 1-intermediate; 2- High high) (See Appendix 2) 203 Broad climate suitability (environmental versatility) y=1, n=0 n 204 Native or naturalized in regions with tropical or subtropical climates y=1, n=0 y 205 Does the species have a history of repeated introductions outside its natural range? y=-2, ?=-1, n=0 y 301 Naturalized beyond native range y = 1*multiplier (see Appendix 2), n= question 205 302 Garden/amenity/disturbance weed n=0, y = 1*multiplier (see n Appendix 2) 303 Agricultural/forestry/horticultural weed n=0, y = 2*multiplier (see n Appendix 2) 304 Environmental weed n=0, y = 2*multiplier (see n Appendix 2) 305 Congeneric weed n=0, y = 1*multiplier (see n Appendix 2) 401 Produces spines, thorns or burrs y=1, n=0 n 402 Allelopathic y=1, n=0 n 403 Parasitic y=1, n=0 n 404 Unpalatable -
Recircumscription of the Lecythidaceae
TAXON 47 - NOVEMBER 1998 817 Recircumscription of the Lecythidaceae Cynthia M. Morton'", Ghillean T. Prance', Scott A. Mori4 & Lucy G. Thorburn' Summary Morton. C. M.• Prance, G. T., Mori, S. A. & Thorburn. L. G.: Recircumscriplion of the Le cythidaceae. Taxon 47: 817-827. 1998. -ISSN 004Q-0262. The phylogenetic relationships of the genera of Lecythidaceae and representatives of Scyto petalaceae were assessed using cladistic analysis of both molecular (rbcL and trnL se quences) and morphological data. The results show that the pantropical family Lecythida ceae is paraphyletic. Support was found for the monophyly of three of the four subfamilies: Lecythidoideae, Planchonioideae, and Foetidioideae. The fourth subfamily, Napoleonaeol deae, was found to be paraphyletic, with members of the Scytopetalaceae being nested within it forming a strong clade with Asteranthos. Both families share a number of mor phological features, including several distinct characters such as cortical bundles in the stem. The combined analysis produced three trees of 471 steps and consistency index Cl = 0.71 and retention index Rl = 0.70. Asteranthos !'P.~, members of Scytopetalaceae should be treated as a subfamily of Lecythidaceae, while Napoleonaea and Crateranthus (the latter based solely on morphological features) should remain in the subfamily Napoleo naeoideae.The Lecythldaceaeare recircumscribed, and Asteranthosand members of Scyto peta/aceae are included in Scytopetaloideae. A formal·llWJ!J-pmic synopsis accommodating this new circumscription is presented. Introduction The Lecythidaceae Poit, are 8 pantropical family of trees and shrubs consisting of . 20 genera split into four subfamilies in contemporary classifications (Cronquist, 1981; Prance & Mori, 1979; Takhtajan, 1987; ~ri & Prance, 1990; Thome, 1992). -
The Leipzig Catalogue of Plants (LCVP) ‐ an Improved Taxonomic Reference List for All Known Vascular Plants
Freiberg et al: The Leipzig Catalogue of Plants (LCVP) ‐ An improved taxonomic reference list for all known vascular plants Supplementary file 3: Literature used to compile LCVP ordered by plant families 1 Acanthaceae AROLLA, RAJENDER GOUD; CHERUKUPALLI, NEERAJA; KHAREEDU, VENKATESWARA RAO; VUDEM, DASHAVANTHA REDDY (2015): DNA barcoding and haplotyping in different Species of Andrographis. In: Biochemical Systematics and Ecology 62, p. 91–97. DOI: 10.1016/j.bse.2015.08.001. BORG, AGNETA JULIA; MCDADE, LUCINDA A.; SCHÖNENBERGER, JÜRGEN (2008): Molecular Phylogenetics and morphological Evolution of Thunbergioideae (Acanthaceae). In: Taxon 57 (3), p. 811–822. DOI: 10.1002/tax.573012. CARINE, MARK A.; SCOTLAND, ROBERT W. (2002): Classification of Strobilanthinae (Acanthaceae): Trying to Classify the Unclassifiable? In: Taxon 51 (2), p. 259–279. DOI: 10.2307/1554926. CÔRTES, ANA LUIZA A.; DANIEL, THOMAS F.; RAPINI, ALESSANDRO (2016): Taxonomic Revision of the Genus Schaueria (Acanthaceae). In: Plant Systematics and Evolution 302 (7), p. 819–851. DOI: 10.1007/s00606-016-1301-y. CÔRTES, ANA LUIZA A.; RAPINI, ALESSANDRO; DANIEL, THOMAS F. (2015): The Tetramerium Lineage (Acanthaceae: Justicieae) does not support the Pleistocene Arc Hypothesis for South American seasonally dry Forests. In: American Journal of Botany 102 (6), p. 992–1007. DOI: 10.3732/ajb.1400558. DANIEL, THOMAS F.; MCDADE, LUCINDA A. (2014): Nelsonioideae (Lamiales: Acanthaceae): Revision of Genera and Catalog of Species. In: Aliso 32 (1), p. 1–45. DOI: 10.5642/aliso.20143201.02. EZCURRA, CECILIA (2002): El Género Justicia (Acanthaceae) en Sudamérica Austral. In: Annals of the Missouri Botanical Garden 89, p. 225–280. FISHER, AMANDA E.; MCDADE, LUCINDA A.; KIEL, CARRIE A.; KHOSHRAVESH, ROXANNE; JOHNSON, MELISSA A.; STATA, MATT ET AL. -
Chapter 1 INTRODUCTION Alvaro J. Duque M
Chapter 1 INTRODUCTION Alvaro J. Duque M. Introduction 1.1 INTRODUCTION Northwestern Amazonian forest conservation: a challenge for ecologists The actual deforestation rates in Amazonian rain forests are extremely high. The worst case scenario could lead to an almost total disappearance of the largest tropical forest mass that nowadays exists on the earth, in a relatively short time (Laurance et al. 2001). Patterns of rain forest plant diversity in northwestern (NW) Amazonia have particular importance as plant diversity in this area reaches exceptional high values per unit area (Gentry 1988a, Valencia et al. 1994, ter Steege et al. 2003). To guarantee an effective conservation planning, basic knowledge on the distribution of individual species and species assemblages is necessary. In spite of the fact that information concerning to plant communities has much increased in the last decade, most studies have focused on trees because they are the most conspicuous elements in the forests (Gentry 1988b, Duivenvoorden 1995, 1996, Pitman et al. 1999, 2001, ter Steege et al. 2000, Condit et al. 2002). However, it is well known that vascular plant diversity in tropical rain forests is also well represented by other growth forms, such as climbers, shrubs, epiphytes and herbs (Gentry and Dobson 1987, Duivenvoorden 1994, Balslev et al. 1998, Galeano et al. 1998). In addition to this lack of knowledge on non-tree growth forms, most studies have been based on different methodological approaches at individual species or community level, different sample designs, and different spatial scales, which hampers the comparisons and extrapolations among independent case studies. The Pleistocene and Miocene-Pliocene climate history has been considered as the cornerstone to understand the origin of the plant and animal biodiversity and biogeography in Amazonian rain forests (Haffer 1969, Colinvaux 1987, Van der Hammen and Absy 1994, Hooghiemstra and van der Hammen 1998). -
A Consensus Phylogenomic Approach Highlights Paleopolyploid and Rapid Radiation in the History of Ericales
RESEARCH ARTICLE A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales Drew A. Larson1,4 , Joseph F. Walker2 , Oscar M. Vargas3 , and Stephen A. Smith1 Manuscript received 8 December 2019; revision accepted 12 February PREMISE: Large genomic data sets offer the promise of resolving historically recalcitrant 2020. species relationships. However, different methodologies can yield conflicting results, 1 Department of Ecology & Evolutionary Biology, University of especially when clades have experienced ancient, rapid diversification. Here, we analyzed Michigan, Ann Arbor, MI 48109, USA the ancient radiation of Ericales and explored sources of uncertainty related to species tree 2 Sainsbury Laboratory (SLCU), University of Cambridge, Cambridge, inference, conflicting gene tree signal, and the inferred placement of gene and genome CB2 1LR, UK duplications. 3 Department of Ecology & Evolutionary Biology, University of California, Santa Cruz, CA 95060, USA METHODS: We used a hierarchical clustering approach, with tree-based homology and 4Author for correspondence (e-mail: [email protected]) orthology detection, to generate six filtered phylogenomic matrices consisting of data Citation: Larson, D. A., J. F. Walker, O. M. Vargas, and S. A. Smith. from 97 transcriptomes and genomes. Support for species relationships was inferred 2020. A consensus phylogenomic approach highlights paleopolyploid from multiple lines of evidence including shared gene duplications, gene tree conflict, and rapid radiation -
Observations on the Phytogeography of the Lecythidaceae Clade (Brazil Nut Family)
Mori, S.A., E.A. Kiernan, N.P. Smith, L.M. Kelley, Y-Y. Huang, G.T. Prance & B. Thiers. 2016. Observations on the phytogeography of the Lecythidaceae clade (Brazil nut family). Phytoneuron 2017-30: 1–85. Published 28 April 2017. ISSN 2153 733X OBSERVATIONS ON THE PHYTOGEOGRAPHY OF THE LECYTHIDACEAE CLADE (BRAZIL NUT FAMILY) SCOTT A. MORI Institute of Systematic Botany The New York Botanical Garden Bronx, New York 10458-5126 [email protected] ELIZABETH A. KIERNAN GIS Laboratory The New York Botanical Garden Bronx, New York 10458-5126 NATHAN P. SMITH Research Associate Institute of Systematic Botany The New York Botanical Garden Bronx, New York 10458-5126 LAWRENCE M. KELLY Pfizer Laboratory The New York Botanical Garden Bronx, New York 10458-5126 YA-YI HUANG Biodiversity Research Center Academia Sinica Taipei 11529, Taiwan GHILLEAN T. PRANCE Royal Botanic Gardens Kew, Richmond, Surrey, United Kingdom TW9 3AB BARBARA THIERS Vice President for Science The New York Botanical Garden Bronx, New York 10458-5126 ABSTRACT The Lecythidaceae clade of the order Ericales is distributed in Africa (including Madagascar), Asia in the broadest sense, and South and Central America. Distribution maps are included for the Lecythidaceae clade as follows: family maps for Napoleonaeaceae and Scytopetalaceae; subfamily maps for the Barringtonioideae, Foetidioideae, and Lecythidoideae, and maps for the subclades of Lecythidaceae subfam. Lecythidoideae. The following topics are discussed: (1) the difficulties using herbarium specimens for studies of phytogeography;