Old World Ruminant Morphophysiology, Life History, and Fossil Record: Exploring Key Innovations of a Diversification Sequence
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												  An Exemplary Case Study Gérard DubostConvergence characteristics between a rodent, the South American lowland paca, and a ruminant, the African water chevrotain: An exemplary case study Gérard Dubost To cite this version: Gérard Dubost. Convergence characteristics between a rodent, the South American lowland paca, and a ruminant, the African water chevrotain: An exemplary case study. Comptes Rendus Biologies, Elsevier Masson, 2017, 10.1016/j.crvi.2017.02.001. hal-01485153 HAL Id: hal-01485153 https://hal.sorbonne-universite.fr/hal-01485153 Submitted on 8 Mar 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial - NoDerivatives| 4.0 International License G Model CRASS3-3495; No. of Pages 10 C. R. Biologies xxx (2017) xxx–xxx Contents lists available at ScienceDirect Comptes Rendus Biologies ww w.sciencedirect.com Ecology/E´ cologie Convergence characteristics between a rodent, the South American lowland paca, and a ruminant, the African water chevrotain: An exemplary case study Caracte`res convergents entre un rongeur, le
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												  Gaits and Their Development in the Infraorder Pecora by Anne InnisGaits and Their Development in the Infraorder Pecora by Anne Innis Dagg, M.A. THESIS Presented to the Faculty of Graduate Studies of the University of Waterloo in partial ful fillmenc of the requirements for the degree of Doctor of Philosopty in Biolog The University of Waterloo February, 1967 The University of Waterloo requires the signature of all persons using this thesis. Please sign below, and give address and date. I hereby declare that I am the sole a�thor of this thesis. I authorize the University of Waterloo to lend it to other institutions or individuals for the purpose of scholarly research. Signature Abstract The gaits of twenty-eight species of the Infraorder Pecora are analyzed from motion picture sequences comprising over 45,000 frames. For each gait the percentage time spent on the various supporting legs during each stride and the order in which the combinations of supporting legs were used are tabulated. When possible the times for the strides are calculated. The walk patterns of each of the four families studied are shown to be statistically distinctive. Within each family, those members that live where the vegetation is so dense that they must rely on hearing to warn them of danger use a more stable walk than those species that inhabit open grasslands. A stable walk is that in which diagonal legs are used in·preference to lateral legs and three or four supporting legs are used rather than two. With a more stable walk, 4 species is able to pause quickly and to flee instantly if danger thr�atens.
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												  Herbivoresherbivores Whatwhat Isis Herbivore?Herbivore?HerbivoresHerbivores WhatWhat isis herbivore?herbivore? • A herbivore is an animal that gets its energy from eating plants • special digestive systems Herbivore Taxonomy Order Suborder Family Proboscideae Elephantidae Elephants Equidae Equines, Perissodactyla Tapiridae (Odd-Toe ungulates) Tapir, Rhinocerotidae Rhinoceroses Swines, Suidae Artiodactyla Suina Hippopotamus Hippopotamidae (Even-Toe ungulates) Tylopoda Camellidae Camels & Llamas Tragulina Tragulidae Tragulus Ruminantia Giraffidae Giraffes, Cervids, Cervidae Antilopes, Bovines, Antilocapridae Caprines, Antlopes Bovidae Etc. Cetartiodactyla wwwwww..ultimateungulateultimateungulate..comcom Order Perissodactyla From Greek : perissos = strange, of numbers odd daktulos = a finger or toe == OddOdd-- ToeToe ungulatesungulates ((สสัตวัตวกกีบคีบคี่)ี่) -Enlarged central digit carries most of body weight (mesaxonic) -Canine teeth reduced or absent -Simple stomachs with large caecum -Hind gut fermentation Order Perissodactyla Order Artiodactyla Greek : artios = complete, of numbers even daktulos = a finger or toe == EvenEven-- ToeToe ungulatesungulates ((สสัตวัตวกกีบคีบคู)ู) - Two enlarged digits share the weight of the body about equally (paraxonic) - Upper incisors and canines lost or reduced - Rumination - Males (and sometimes females) have weaponry : tusks, antler, horns Order Artiodactyla Herbivore Taxonomy Order Suborder Family Proboscideae Elephantidae Elephants Equidae Equines, Perissodactyla Tapiridae (Odd-Toe ungulates) Tapir, Rhinocerotidae Rhinoceroses Swines, Suidae Artiodactyla
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												  Investigating Sexual Dimorphism in Ceratopsid HorncoresUniversity of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2013-01-25 Investigating Sexual Dimorphism in Ceratopsid Horncores Borkovic, Benjamin Borkovic, B. (2013). Investigating Sexual Dimorphism in Ceratopsid Horncores (Unpublished master's thesis). University of Calgary, Calgary, AB. doi:10.11575/PRISM/26635 http://hdl.handle.net/11023/498 master thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Investigating Sexual Dimorphism in Ceratopsid Horncores by Benjamin Borkovic A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE DEPARTMENT OF BIOLOGICAL SCIENCES CALGARY, ALBERTA JANUARY, 2013 © Benjamin Borkovic 2013 Abstract Evidence for sexual dimorphism was investigated in the horncores of two ceratopsid dinosaurs, Triceratops and Centrosaurus apertus. A review of studies of sexual dimorphism in the vertebrate fossil record revealed methods that were selected for use in ceratopsids. Mountain goats, bison, and pronghorn were selected as exemplar taxa for a proof of principle study that tested the selected methods, and informed and guided the investigation of sexual dimorphism in dinosaurs. Skulls of these exemplar taxa were measured in museum collections, and methods of analysing morphological variation were tested for their ability to demonstrate sexual dimorphism in their horns and horncores.
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												  Sequence Variation of Necdin Gene in Bovidae Sunday OPeters et al. Journal of Animal Science and Technology (2018) 60:32 https://doi.org/10.1186/s40781-018-0191-7 RESEARCH Open Access Sequence variation of necdin gene in Bovidae Sunday O. Peters1*†, Marcos De Donato2*†, Tanveer Hussain3, Hectorina Rodulfo2, Masroor E. Babar3 and Ikhide G. Imumorin4,5 Abstract Background: Necdin (NDN), a member of the melanoma antigen family showing imprinted pattern of expression, has been implicated as causing Prader-Willi symptoms, and known to participate in cellular growth, cellular migration and differentiation. The region where NDN is located has been associated to QTLs affecting reproduction and early growth in cattle, but location and functional analysis of the molecular mechanisms have not been established. Methods: Herewereportthesequencevariationoftheentirecodingsequencefrom72samplesofcattle, yak, buffalo, goat and sheep, and discuss its variation in Bovidae. Median-joining network analysis was used to analyze the variation found in the species. Synonymous and non-synonymous substitution rates were determined for the analysis of all the polymorphic sites. Phylogenetic analysis were carried out among the species of Bovidae to reconstruct their relationships. Results: From the phylogenetic analysis with the consensus sequences of the studied Bovidae species, we found that only 11 of the 26 nucleotide changes that differentiate them produced amino acid changes. All the SNPs found in the cattle breeds were novel and showed similar percentages of nucleotides with non-synonymous substitutions at the N- terminal, MHD and C-terminal (12.3, 12.8 and 12.5%, respectively), and were much higher than the percentage of synonymous substitutions (2.5, 2.6 and 4.9%, respectively). Three mutations in cattle and one in sheep, detected in heterozygous individuals were predicted to be deleterious.
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												  Whole-Genome Sequencing of Wild Siberian MuskYi et al. BMC Genomics (2020) 21:108 https://doi.org/10.1186/s12864-020-6495-2 RESEARCH ARTICLE Open Access Whole-genome sequencing of wild Siberian musk deer (Moschus moschiferus) provides insights into its genetic features Li Yi1†, Menggen Dalai2*†, Rina Su1†, Weili Lin3, Myagmarsuren Erdenedalai4, Batkhuu Luvsantseren4, Chimedragchaa Chimedtseren4*, Zhen Wang3* and Surong Hasi1* Abstract Background: Siberian musk deer, one of the seven species, is distributed in coniferous forests of Asia. Worldwide, the population size of Siberian musk deer is threatened by severe illegal poaching for commercially valuable musk and meat, habitat losses, and forest fire. At present, this species is categorized as Vulnerable on the IUCN Red List. However, the genetic information of Siberian musk deer is largely unexplored. Results: Here, we produced 3.10 Gb draft assembly of wild Siberian musk deer with a contig N50 of 29,145 bp and a scaffold N50 of 7,955,248 bp. We annotated 19,363 protein-coding genes and estimated 44.44% of the genome to be repetitive. Our phylogenetic analysis reveals that wild Siberian musk deer is closer to Bovidae than to Cervidae. Comparative analyses showed that the genetic features of Siberian musk deer adapted in cold and high-altitude environments. We sequenced two additional genomes of Siberian musk deer constructed demographic history indicated that changes in effective population size corresponded with recent glacial epochs. Finally, we identified several candidate genes that may play a role in the musk secretion based on transcriptome analysis. Conclusions: Here, we present a high-quality draft genome of wild Siberian musk deer, which will provide a valuable genetic resource for further investigations of this economically important musk deer.
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												  Issn: 2250-0588 Fossil MammalsIJREISS Volume 2, Issue 8 (August 2012) ISSN: 2250-0588 FOSSIL MAMMALS (RHINOCEROTIDS, GIRAFFIDS, BOVIDS) FROM THE MIOCENE ROCKS OF DHOK BUN AMEER KHATOON, DISTRICT CHAKWAL, PUNJAB, PAKISTAN 1Khizar Samiullah* 1Muhammad Akhtar, 2Muhammad A. Khan and 3Abdul Ghaffar 1Zoology department, Quaid-e-Azam campus, Punjab University, Lahore, Punjab, Pakistan 2Zoology Department, GC University, Faisalabad, Punjab, Pakistan 3Department of Meteorology, COMSATS Institute of Information Technology (CIIT), Islamabad ABSTRACT Fossil site Dhok Bun Ameer Khatoon (32o 47' 26.4" N, 72° 55' 35.7" E) yielded a significant amount of mammalian assemblage including two families of even-toed fossil mammal (Giraffidae, and Bovidae) and one family of odd-toed (Rhinocerotidae) of the Late Miocene (Samiullah, 2011). This newly discovered site has well exposed Chinji and Nagri formation and has dated approximately 14.2-9.5 Ma. This age agrees with the divergence of different mammalian genera. Sedimentological evidence of the site supports that this is deposited in locustrine or fluvial environment, as Chinji formation is composed primarily of mud-stone while the Nagri formation is sand dominated. Palaeoenvironmental data indicates that Miocene climate of Pakistan was probably be monsoonal as there is now a days. Mostly the genera recovered from this site resemble with the overlying younger Dhok Pathan formation of the Siwaliks while the size variation in dentition is taxonomically important for vertebrate evolutionary point of view and this is the main reason to conduct this study at this specific site to add additional information in the field of Palaeontology. A detailed study of fossils mammals found in Miocene rocks exposed at Dhok Bun Ameer Khatoon was carried out.
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												  New Remains of Primitive Ruminants from Thailand: Evidence of the EarlyZSC071.fm Page 231 Thursday, September 13, 2001 6:12 PM New0Blackwell Science, Ltd remains of primitive ruminants from Thailand: evidence of the early evolution of the Ruminantia in Asia GRÉGOIRE MÉTAIS, YAOWALAK CHAIMANEE, JEAN-JACQUES JAEGER & STÉPHANE DUCROCQ Accepted: 23 June 2001 Métais, G., Chaimanee, Y., Jaeger, J.-J. & Ducrocq S. (2001). New remains of primitive rumi- nants from Thailand: evidence of the early evolution of the Ruminantia in Asia. — Zoologica Scripta, 30, 231–248. A new tragulid, Archaeotragulus krabiensis, gen. n. et sp. n., is described from the late Eocene Krabi Basin (south Thailand). It represents the oldest occurrence of the family which was pre- viously unknown prior to the Miocene. Archaeotragulus displays a mixture of primitive and derived characters, together with the M structure on the trigonid, which appears to be the main dental autapomorphy of the family. We also report the occurrence at Krabi of a new Lophiomerycid, Krabimeryx primitivus, gen. n. et sp. n., which displays affinities with Chinese representatives of the family, particularly Lophiomeryx. The familial status of Iberomeryx is dis- cussed and a set of characters is proposed to define both Tragulidae and Lophiomerycidae. Results of phylogenetic analysis show that tragulids are monophyletic and appear nested within the lophiomerycids. The occurrence of Tragulidae and Lophiomerycidae in the upper Eocene of south-east Asia enhances the hypothesis that ruminants originated in Asia, but it also challenges the taxonomic status of traguloids within the Ruminantia. Grégoire Métais, Institut des Sciences de l’Evolution, UMR 5554 CNRS, Case 064, Université de Montpellier II, 34095 Montpellier cedex 5, France.
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												  The Evolution of Animal WeaponsThe Evolution of Animal Weapons Douglas J. Emlen Division of Biological Sciences, The University of Montana, Missoula, Montana 59812; email: [email protected] Annu. Rev. Ecol. Evol. Syst. 2008. 39:387-413 Key Words First published online as a Review in Advance on animal diversity, sexual selection, male competition, horns, antlers, tusks September 2, 2008 The Annual Review of Ecology, Evolution, and Abstract Systematics is online at ecolsys.annualreviews.org Males in many species invest substantially in structures that are used in com- This article's doi: bat with rivals over access to females. These weapons can attain extreme 10.1146/annurev.ecolsys.39.110707.173 502 proportions and have diversified in form repeatedly. I review empirical lit- Copyright © 2008 by Annual Reviews. erature on the function and evolution of sexually selected weapons to clarify All rights reserved important unanswered questions for future research. Despite their many 1543-592X/08/1201-0387$20.00 shapes and sizes, and the multitude of habitats within which they function, animal weapons share many properties: They evolve when males are able to defend spatially restricted critical resources, they are typically the most variable morphological structures of these species, and this variation hon- estly reflects among-individual differences in body size or quality. What is not clear is how, or why, these weapons diverge in form. The potential for male competition to drive rapid divergence in weapon morphology remains one of the most exciting and understudied topics in sexual selection research today. 3*7 INTRODUCTION Sexual selection is credited with the evolution of nature's most extravagant structures, and these include showy male adornments that are attractive to females (ornaments) and an arsenal of outgrowths that function in male-male combat (weapons) (Darwin 1871).
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												  Discovery of Prolibytherium Magnieri Arambourg, 1961 (Artiodactyla, Climacoceratidae) in EgyptDiscovery of Prolibytherium magnieri Arambourg, 1961 (Artiodactyla, Climacoceratidae) in Egypt Martin PICKFORD Chaire de Paléoanthropologie et de Préhistoire, Collège de France, 11 place M. Berthelot, F-75005 Paris (France) Laboratoire de Paléontologie, UMR 8596 du CNRS, 8 rue Buffon, F-75231 Paris cedex 05 (France) [email protected] Yousri Saad ATTIA Medhat Said ABD EL GHANY Egyptian Geological Museum, EGSMA, Athar El Nabi, Misr El Kadima, Cairo (Egypt) [email protected] Pickford M., Attia Y. S. & Abd El Ghany M. S. 2001. — Discovery of Prolibytherium magnieri Arambourg, 1961 (Artiodactyla, Climacoceratidae) in Egypt. Geodiversitas 23 (4) : 647-652. ABSTRACT While searching for fossils from Wadi Moghara in the collections of the Egyptian Geological Museum, the authors came across some undescribed remains of Prolibytherium magnieri Arambourg, 1961. A brain case with attached frontal appendages (CGM 82975) has some matrix adhering to the bone which indicates that it is most probably from Wadi Moghara, although KEY WORDS Artiodactyla, there is no documentary evidence as to its discovery locus. Some mandible Ruminantia, fragments and postcranial elements which can be assigned to Prolibytherium Climacoceratidae, Arambourg, 1961 on the basis of their size were collected from Wadi early Miocene, Egypt, Moghara by R. Fourtau and others prior to 1920, but have remained undes- biochronology. cribed. The fossils are sufficiently interesting to warrant description. GEODIVERSITAS • 2001 • 23 (4) © Publications Scientifiques du Muséum national d’Histoire naturelle, Paris. www.mnhn.fr/publication/ 647 Pickford M., Attia Y. S. & Abd El Ghany M. S. RÉSUMÉ Découverte de Prolibytherium magnieri Arambourg, 1961 (Artiodactyla, Climacoceratidae) en Égypte. En recherchant des fossiles du Wadi Moghara dans les collections de l’Egyptian Geological Museum, les auteurs ont découvert des restes inédits de Prolibytherium magnieri Arambourg, 1961.
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											AN AMERICAN FOSSIL GIRAFFE Giraffa Nebrascensis, Sp. NovUniversity of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Bulletin of the University of Nebraska State Museum, University of Nebraska State Museum 1925 AN AMERICAN FOSSIL GIRAFFE irG affa nebrascensis, sp. nov. W. D. Matthew E. H. Barbour Follow this and additional works at: http://digitalcommons.unl.edu/museumbulletin Part of the Entomology Commons, Geology Commons, Geomorphology Commons, Other Ecology and Evolutionary Biology Commons, Paleobiology Commons, Paleontology Commons, and the Sedimentology Commons This Article is brought to you for free and open access by the Museum, University of Nebraska State at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Bulletin of the University of Nebraska State Museum by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. BULLETIN 4 VOLUME 1 APRIL 1925 THE NEBRASKA STATE MUSEUM ERWIN H. BARBOUR, Director AN AMERICAN FOSSIL GIRAFFE Giraffa nebrascensis, sp. nov. By W. D. MATTHEW E. H. BARBOUR A fragment of the lower jaw of a large fossil mammal with two well-worn teeth was dug up in June 1918, at a depth of 20 feet, while digging a cess pool at Bradshaw, York County, Nebraska. This unique specimen, accessioned 7-7-18, was brought to the Nebraska State Museum by A. Archie Dorsey, and was donated by C. B. Palmet, both of Bradshaw. It undoubtedly occurred in loess, which is thickly as well. as extensively de veloped in this region. It is a ruminant jaw, the teeth preserved being P4 and m 1 • The characteristic pattern of the premolar excludes refer ence to the Bovidae, and leaves the choice between the Gi raffidae, Pa~aeomerycidae, and certain large Cervidae.
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												  DNA Systematics and Evolution of the Artiodactyl Family Bovidae (Phylogeny/Ntdna Sequences/Rrna Genes/Rapid Cladogenesis) MARC WProc. Natl. Acad. Sci. USA Vol. 89, pp. 3972-3976, May 1992 Evolution DNA systematics and evolution of the artiodactyl family Bovidae (phylogeny/ntDNA sequences/rRNA genes/rapid cladogenesis) MARC W. ALLARD, MICHAEL M. MIYAMOTO, LIANNA JARECKI, FRED KRAuS, AND MICHELE R. TENNANT Department of Zoology, University of Florida, Gainesville, FL 32611-2009 Communicated by Charles G. Sibley, January 17, 1992 (received for review October 29, 1991) ABSTRACT Nine additional sequences from representa- outgroup representatives of the infraorder Pecora (8, 9). The tives ofdierent tribes ofthefamily Bovidae were combined with time of divergence for the bovid tribes [estimates ranging six published artiodactyl sequences to provide orthologous from 7 to 20 MA (7)] suggests that relationships within the mtDNA for investigation ofbovid phylogeny and evolution. Each family should be resolvable with this gene complex, which species was represented by a homologous 2.7-kilobase-pair evolves at a rate suitable for this analysis (10). Of the 14 stretch ofmtDNA for the complete 12S and 16S rRNA genes and commonly recognized tribes of Bovidae, only 3 (Ovibovini, three adjacent tRNA genes. These data, whencompared toother Peleini, and Rupicaprini) were not available for this sequenc- results, provided evidence for a monophyletic Bovidae and for ing study; their later inclusion will provide tests of the two clades within the family: one including the tribes Bosela- hypotheses developed herein. phini, Bovini, and Tragelaphini and another for an Antilo- pini/Neotragini grouping. AU other intrafamilial relationships MATERIALS AND METHODS were only weakly supported. These sequence comparisons sug- mtDNA sequences were collected from nine tribal represen- gest that most bovid tribes originated early in the Miocene with tatives including Aepyceros melampus (AME), Boselaphus all extant lineages present by -16-17 million years ago.