Bridging Science and Security for Biological Research
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Infectious Disease Research Biocontainment in Gain-Of-Function
Downloaded from Biocontainment in Gain-of-Function mbio.asm.org Infectious Disease Research W. Ian Lipkin on December 12, 2012 - Published by 2012. Biocontainment in Gain-of-Function Infectious Disease Research . mBio 3(5): . doi:10.1128/mBio.00290-12. Updated information and services can be found at: http://mbio.asm.org/content/3/5/e00290-12.full.html CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this mbio.asm.org article), more>> Information about commercial reprint orders: http://mbio.asm.org/misc/reprints.xhtml Information about Print on Demand and other content delivery options: http://mbio.asm.org/misc/contentdelivery.xhtml To subscribe to another ASM Journal go to: http://journals.asm.org/subscriptions/ Downloaded from COMMENTARY Biocontainment in Gain-of-Function Infectious Disease Research mbio.asm.org W. Ian Lipkin Columbia University, New York, New York, USA on December 12, 2012 - Published by ABSTRACT The discussion of H5N1 influenza virus gain-of-function research has focused chiefly on its risk-to-benefit ratio. An- other key component of risk is the level of containment employed. Work is more expensive and less efficient when pursued at biosafety level 4 (BSL-4) than at BSL-3 or at BSL-3 as modified for work with agricultural pathogens (BSL-3-Ag). However, here too a risk-to-benefit ratio analysis is applicable. BSL-4 procedures mandate daily inspection of facilities and equipment, moni- toring of personnel for signs and symptoms of disease, and logs of dates and times that personnel, equipment, supplies, and sam- ples enter and exit containment. -
A Paradox of Zoonotic Disease
Tropical Medicine and Infectious Disease Communication The Convergence of High-Consequence Livestock and Human Pathogen Research and Development: A Paradox of Zoonotic Disease Julia M. Michelotti 1,* ID , Kenneth B. Yeh 1 ID , Tammy R. Beckham 2, Michelle M. Colby 3 ID , Debanjana Dasgupta 1, Kurt A. Zuelke 4 and Gene G. Olinger 1 1 MRI Global, Gaithersburg, MD 20878, USA; [email protected] (K.B.Y.); [email protected] (D.D.); [email protected] (G.G.O.) 2 College of Veterinary Medicine, Kansas State University, Manhattan, KS 66503, USA; [email protected] 3 Institute of Food Production and Sustainability, National Institute of Food and Agriculture, United States Department of Agriculture, Washington, DC 20250, USA; [email protected] 4 Strategic Biosecurity and Biocontainment Facility Management Consultant, Kurt Zuelke Consulting, Lenexa, KS 66220, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-240-361-4062 Received: 23 April 2018; Accepted: 23 May 2018; Published: 30 May 2018 Abstract: The World Health Organization (WHO) estimates that zoonotic diseases transmitted from animals to humans account for 75 percent of new and emerging infectious diseases. Globally, high-consequence pathogens that impact livestock and have the potential for human transmission create research paradoxes and operational challenges for the high-containment laboratories that conduct work with them. These specialized facilities are required for conducting all phases of research on high-consequence pathogens (basic, applied, and translational) with an emphasis on both the generation of fundamental knowledge and product development. To achieve this research mission, a highly-trained workforce is required and flexible operational methods are needed. -
Animal Biosafety Level
Biological Safety Manual Prepared by: Environmental Health and Safety Office April 2012 Table of Contents Table of Contents .................................................................................................................... ii Tables and Figures ................................................................................................................. vii Acronyms ........................................................................................................................... viii Foreword ............................................................................................................................... x Document History .................................................................................................................... x 1.0 Introduction ........................................................................................................ 1-1 1.1 Biological Material ............................................................................................. 1-1 1.1.1 Biohazardous Material ........................................................................................ 1-1 1.1.2 Nonbiohazardous Material .................................................................................. 1-2 1.2 Regulations, Guidelines, and Permit Requirements ............................................. 1-2 1.3 Roles and Responsibilities ................................................................................... 1-4 1.3.1 Vice President for Research and Economic Development -
Placing Global Biosecurity Engagement Programs Under the Umbrella of Global Health Security
FAS Issue Brief May 2014 Placing Global Biosecurity Engagement Programs under the Umbrella of Global Health Security Michelle Rozo Federation of American Scientists FAS ISSUE BRIEF Author Michelle Rozo, Ph.D. Candidate, Cell, Molecular, Developmental Biology and Biophysics, Johns Hopkins University. About FAS Issue Briefs FAS Issue Briefs provide nonpartisan research and analysis for policymakers, government officials, academics, and the general public. All statements of fact and expressions of opinion contained in this and other FAS Issue Briefs are the sole responsibility of the author or authors. This report does not necessarily represent the views of the Federation of American Scientists. About FAS Founded in 1945 by many of the scientists who built the first atomic bombs, the Federation of American Scientists (FAS) is devoted to the belief that scientists, engineers, and other technically trained people have the ethical obligation to ensure that the technological fruits of their intellect and labor are applied to the benefit of humankind. The founding mission was to prevent nuclear war. While nuclear security remains a major objective of FAS today, the organization has expanded its critical work to address urgent issues at the intersection of science and security. FAS publications are produced to increase the understanding of policymakers, the public, and the press about urgent issues in science and security policy. Individual authors who may be FAS staff or acknowledged experts from outside the institution write these reports. Thus, these reports do not represent an FAS institutional position on policy issues. All statements of fact and expressions of opinion contained in this and other FAS Issue Briefs are the sole responsibility of the author or authors. -
Biosurveillance Signatures for Biosecurity and Public Health
Biosurveillance Signatures for biosecurity and public health A Los Alamos National Laboratory Implementation Plan for the Science of Signatures Biological Signatures for National Security Los Alamos National Laboratory Biosurveillance at Los Alamos Table of Contents Los Alamos National Laboratory’s charge is to develop science and technology that will make the nation safer and enhance our global standing. This breadth of mission scope requires careful Biosurveillance at Los Alamos ....................................2 internal planning and effective cooperation with external partners and other governmental agencies. The document you A National Imperative .................................................4 are holding is one of the products of ongoing planning efforts that are designed to bring to bear the Laboratories unique Laboratory Planning .....................................................5 capabilities on problems of the greatest significance. To those unfamiliar with the extent of our science, it may seem odd that Who should read this ....................................................5 our planning includes such a strong biology focus, yet our work in this area extends all the way back to the Manhattan Project and the birth of large scale LANL Strategic Context ...............................................6 government-sponsored research. Following World War II, the Laboratory began programs in health and radiation physics that expanded to become the robust Biosurveillance Overview.............................................8 -
Medical Aspects of Biological Warfare
Epidemiology of Biowarfare and Bioterrorism Chapter 2 EPIDEMIOLOGY OF BIOWARFARE AND BIOTERRORISM ZYGMUNT F. DEMBEK, PhD, MS, MPH, LHD*; JULIE A. PAVLIN, MD, PhD, MPH†; MARTINA SIWEK, PhD‡; and MARK G. KORTEPETER, MD, MPH§ INTRODUCTION THE EPIDEMIOLOGY OF EPIDEMICS Definition Recognition Potential Epidemiological Clues to an Unnatural Event Outbreak Investigation EPIDEMIOLOGICAL CASE STUDIES Bioterrorism Events Accidental Release of Biological Agents Studies of Natural Outbreaks for Potential Bioweapon Use EPIDEMIOLOGICAL ASSESSMENT TOOL IMPROVING RECOGNITION AND SURVEILLANCE OF BIOTERRORISM POTENTIAL IMPACT OF ADVANCED MOLECULAR TECHNIQUES ON THE EPIDEMIOLOGY OF BIOWARFARE AND BIOTERRORISM SUMMARY *Colonel (Retired), Medical Service Corps, US Army Reserve; Associate Professor, Department of Military and Emergency Medicine, Uniformed Ser- vices University of the Health Sciences, 4301 Jones Bridge Road, Bethesda, Maryland 20814; formerly, Chief, Biodefense Epidemiology and Education & Training Programs, Division of Medicine, US Army Medical Research Institute of Infectious Diseases, 1425 Porter Street, Fort Detrick, Maryland †Colonel (Retired), Medical Corps, US Army; Deputy Director, Armed Forces Health Surveillance Center, 11800 Tech Road, Silver Spring, Maryland 20904 ‡Chief Scientist, Cherokee Nation Technology Solutions in Support of Global Emerging Infections Surveillance and Response System, Armed Forces Health Surveillance Center, 11800 Tech Road, Silver Spring, Maryland 20904; formerly, Science Manager/Liaison, Biosurveillance -
Quorum Sensing
SBT1103 / MICROBIOLOGY / UNIT V / BIOTECH/BIOMED/BIOINFO II SEMESTER / I YEAR UNIT – V APPLICATIONS OF MICROBIOLOGY 1 SBT1103 / MICROBIOLOGY / UNIT V / BIOTECH/BIOMED/BIOINFO II SEMESTER / I YEAR Microbial ecology The great plate count anomaly. Counts of cells obtained via cultivation are orders of magnitude lower than those directly observed under the microscope. This is because microbiologists are able to cultivate only a minority of naturally occurring microbes using current laboratory techniques, depending on the environment.[1] Microbial ecology (or environmental microbiology) is the ecology of microorganisms: their relationship with one another and with their environment. It concerns the three major domains of life—Eukaryota, Archaea, and Bacteria—as well as viruses. Microorganisms, by their omnipresence, impact the entire biosphere. Microbial life plays a primary role in regulating biogeochemical systems in virtually all of our planet's environments, including some of the most extreme, from frozen environments and acidic lakes, to hydrothermal vents at the bottom of deepest oceans, and some of the most familiar, such as the human small intestine.[3][4] As a consequence of the quantitative magnitude of microbial life (Whitman and coworkers calculated 5.0×1030 cells, eight orders of magnitude greater than the number of stars in the observable universe[5][6]) microbes, by virtue of their biomass alone, constitute a significant carbon sink.[7] Aside from carbon fixation, microorganisms’ key collective metabolic processes (including -
Biosecurity: a Comprehensive Action Plan Center for American Progress
Center for American Progress Biosecurity A Comprehensive Action Plan Andrew J. Grotto Jonathan B. Tucker Progressive Ideas for a Strong, Just, and Free America Biosecurity: A Comprehensive Action Plan Center for American Progress Biosecurity A Comprehensive Action Plan Andrew J. Grotto and Jonathan B. Tucker June 2006 After Guantanamo: A Special Tribunal for International Terrorist Suspects 1 Biosecurity: A Comprehensive Action Plan Center for American Progress Table of Contents EXECUTIVE SUMMARY i BIOLOGICAL THREATS FACING THE UNITED STATES 1 PREVENTING BIO-CATASTROPHES: THE NEED FOR A GLOBAL APPROACH 9 PREVENTING THE MISUSE OF THE LIFE SCIENCES 9 RECOMMENDATIONS STRENGTHENING BIOLOGICAL DISARMAMENT MEASURES 14 RECOMMENDATIONS 8 CONTAINING DISEASE OUTBREAKS: AN INTEGRATED PUBLIC HEALTH STRATEGY 21 TIMELY DETECTION OF OUTBREAKS 22 RECOMMENDATIONS 0 RAPID CONTAINMENT OF OUTBREAKS 32 RECOMMENDATIONS 5 DEFENDING AGAINST BIOLOGICAL THREATS: AN INTEGRATED RESEARCH STRATEGY 37 REFORMING THE DRUG DEVELOPMENT PROCESS 38 RECOMMENDATIONS 41 RATIONALIZING BIODEFENSE SPENDING 42 RECOMMENDATIONS 44 GLOSSARY 47 Biosecurity: A Comprehensive Action Plan ACKNOWLEDGMENTS The authors are deeply grateful to the following individuals for their valuable comments and criticisms on earlier drafts of this report: Bob Boorstin, Joseph Cirincione, P. J. Crowley, Richard Ebright, Gerald L. Epstein, Trevor Findlay, Brian Finlay, Elisa D. Harris, David Heyman, Ajey Lele, Dan Matro, Caitriona McLeish, Jonathan Moreno, Peter Ogden, Alan Pearson, Michael Schiffer, Laura Segal, and Bradley Smith. 4 Center for American Progress Executive Summary iological weapons and infectious diseases share several fundamental characteristics that the United States can leverage to counter both Bof these threats more effectively. Both a bioweapons attack and a natural pandemic, such as avian flu, can be detected in similar ways, and the effectiveness of any response to an outbreak of infectious disease, whether natural or caused deliberately by terrorists, hinges on the strength of the U.S. -
Challenges and Options for the National Biosurveillance Integration Center
United States Government Accountability Office Report to Congressional Requesters September 2015 BIOSURVEILLANCE Challenges and Options for the National Biosurveillance Integration Center GAO-15-793 September 2015 BIOSURVEILLANCE Challenges and Options for the National Biosurveillance Integration Center Highlights of GAO-15-793, a report to congressional requesters Why GAO Did This Study What GAO Found A biological event, such as a naturally The National Biosurveillance Integration Center (NBIC) has activities that support occurring pandemic or a terrorist attack its integration mission, but faces challenges that limit its ability to enhance the with a weapon of mass destruction, national biosurveillance capability. In the Implementing Recommendations of the could have catastrophic consequences 9/11 Commission Act of 2007 (9/11 Commission Act) and NBIC Strategic Plan, for the nation. This potential threat GAO identified three roles that NBIC must fulfill to meet its biosurveillance underscores the importance of a integration mission. The following describes actions and challenges in each role: national biosurveillance capability— that is, the ability to detect biological • Analyzer: NBIC is to use technology and subject matter expertise, including events of national significance to using analytical tools, to meaningfully connect disparate datasets and provide early warning and information information for earlier warning and better situational awareness of biological to guide public health and emergency events. GAO found that NBIC produces -
Biosurveillance and Outbreak Detection
Chapter 3 Biosurveillance and Outbreak Detection Paola Sebastiani, PhD∗, Kenneth D. Mandl, MD, MPH × ∗ Department of Biostatistics, Boston University, 715 Albany Street, Boston, MA 02118 ×Informatics Program and Division of Emergency Medicine, Children’s Hospital Boston, 300 Longwood Avenue, Boston, MA 02115 Abstract: Faced with the very real threat of bioterrorism, the critical need for early detection of an outbreak has shortened the time frame for major enhancements to our public health infrastructure. The early detection of covert biological attacks requires real time data streams revealing of the health of the population, as well as novel methods to detect abnormalities. Keywords: bioterrorism, spatial clustering, syndromic surveillance, temporal model- ing. 3.1 Biological warfare agents Our national security, threatened by asymmetrical warfare against military and civilian targets, has become increasingly dependent on quick acquisition, processing, integra- tion and interpretation of massive amounts of data. In the mid 1990s, the White House 191 AUTHOR 192 and DOD identified bioterrorism directed against civilian populations as a substantial risk [Centers for Disease Control, 2000], and then stepped up efforts to prevent mass civilian casualties after the anthrax attacks in fall 2001 [Jernigan et al., 2001]. Early de- tection of bioterrorism requires both real time data and real time interpretation. Toward this goal, the biomedical, public health, defense, law enforcement, and and intelligence communities all endeavor to develop new means of communication and novel sources of data. Public health surveillance is defined as “the ongoing, systematic collection, analysis, interpretation, and dissemination of data regarding a health-related event for use in public health action to reduce morbidity and mortality and to improve health” [Centers for Disease Control and Prevention, 2001]. -
Senate Commerce Committee Republican Members: Democratic Members: Thune, John (SD), Chairman Nelson, Bill (FL), Ranking Member Wicker, Roger F
Senate Commerce Committee Republican Members: Democratic Members: Thune, John (SD), Chairman Nelson, Bill (FL), Ranking Member Wicker, Roger F. (MS) Cantwell, Maria (WA) Blunt, Roy (MO) Klobuchar, Amy (MN) Cruz, Ted (TX) Blumenthal, Richard (CT) Fischer, Deb (NE) Schatz, Brian (HI) Moran, Jerry (KS) Markey, Edward J. (MA) Sullivan, Dan (AK) Udall, Tom (NM) Heller, Dean (NV) Peters, Gary C. (MI) Inhofe, James M. (OK) Baldwin, Tammy (WI) Lee, Mike (UT) Duckworth, Tammy (IL) Johnson, Ron (WI) Hassan, Margaret Wood (NH) CaPito, Shelley Moore (WV) Cortez Masto, Catherine (NV) Gardner, Cory (CO) Tester, Jon (Montana) Young, Todd (IN) John Thune CHAIRMAN (56) R-SD elected 2004 United States Senate SD-511 Phone: (202) 224-2321 Director of Scheduling: [email protected] [email protected] Chief of Staff: Brendon Plack [email protected] Telecommunications Legislative Aide: [email protected] Health Legislative Correspondent: [email protected] Senior Policy Advisor Agriculture, Environment [email protected] Committees and Subcommittees: Senate Committee on Agriculture, Nutrition, and Forestry Senate Subcommittee on Commodities, Risk Management and Trade Senate Subcommittee on Livestock, Marketing and Agriculture Security Senate Subcommittee on Rural DeveloPment and Energy Bios Senate Commerce Committee – 115th Congress 1 Senate Committee on Commerce, Science, and Transportation Senate Subcommittee on Aviation OPerations, Safety, and Security Senate Subcommittee on Communications, -
BMBL) Quickly Became the Cornerstone of Biosafety Practice and Policy in the United States Upon First Publication in 1984
Biosafety in Microbiological and Biomedical Laboratories 5th Edition U.S. Department of Health and Human Services Public Health Service Centers for Disease Control and Prevention National Institutes of Health HHS Publication No. (CDC) 21-1112 Revised December 2009 Foreword Biosafety in Microbiological and Biomedical Laboratories (BMBL) quickly became the cornerstone of biosafety practice and policy in the United States upon first publication in 1984. Historically, the information in this publication has been advisory is nature even though legislation and regulation, in some circumstances, have overtaken it and made compliance with the guidance provided mandatory. We wish to emphasize that the 5th edition of the BMBL remains an advisory document recommending best practices for the safe conduct of work in biomedical and clinical laboratories from a biosafety perspective, and is not intended as a regulatory document though we recognize that it will be used that way by some. This edition of the BMBL includes additional sections, expanded sections on the principles and practices of biosafety and risk assessment; and revised agent summary statements and appendices. We worked to harmonize the recommendations included in this edition with guidance issued and regulations promulgated by other federal agencies. Wherever possible, we clarified both the language and intent of the information provided. The events of September 11, 2001, and the anthrax attacks in October of that year re-shaped and changed, forever, the way we manage and conduct work