Interim Report IR-12-064 Post-Zygotic Reproductive Isolation Among Populations of Iris Atropurpurea
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Jordan Itinerary Wildlife Holiday Botanical Tour Irises Tulips Orchids
Jordan A Greentours Itinerary Day 1 Arrive Jordan Our direct British Airways flight arrives late in the evening so we’ll stay the first night in Madaba, just half an hour from the airport. Days 2 - 5 The Northern Hills, Ajlun, Jerash, and the Syrian border The hills that form the east bank of the Jordan Valley may come as a surprise to the first-time visitor to Jordan. Covered in a beguiling mix of olive groves, terraces, villages and some rather fine indigenous forest, they have a very rich natural as well as cultural heritage. The latter of course will play a significant part on our tour and so we’ll take time out to enjoy the Roman ruins at Jerash, the wonderful situation of Roman Pella, and the fairy-tale ruins of the Arab-built Crusader period castle that looms over Ajlun. However it is the fauna and flora that will take most of our attention. The hills reach around four thousand feet above sea level along their length, actually four thousand two hundred feet above the almost subtropical Jordan River in the valley below. The hills have a largely European avifauna but as one descends things become more exotic with first Blackstarts and Spectacled Bulbuls, and then White-throated Kingfisher and Little Green Bee- eater. The same is true of the flowers with the highest hills having an almost alpine component and the valley a rich mixture of Middle-eastern plants. Ajlun, a new nature reserve protecting an area of natural evergreen oak forest, is right on the very tops of the hills. -
Scanned Document
•••••OCTOBER · 19 7 4- Number 14 THE SPECIES IRIS STUDY GROUP OF THE AMERICAN IRIS SOCIETY Jean Witt, of Seattle, is the Director of the AIS Species Seed Exchange. he also is an expert at doing ink-line botanic illustrations. Her seed exchange list for 1974 will be exten ive - but it will NOT offer eeds of the pecies which she has drawn for this cover of SIGNA. Seeds of Iris afghanica, of tpe Regelia Section, are not yet available - because Iris afghanico is a newly discovered and newly described species. More details are on page 367. THE SPECIES IRIS STUDY GROUP of_ TH E AMERICAN IRIS SOCIETY OFFICERS OF THE SOCIETY Chairman- - - - - - - Roy Davidson- - - 911 Western Avenue,,_ Number 200 Seattle, Washington !:18104 phone 206-746- 2156 Secretary-Treasurer - - - Homer Metcalf - - Montana State Universi~i College of Agriculture BoLeman Montana 597 5 phone 46 6-586-5624 Librarian - - - - - - Jerry Flintoff- 5608 North 18th Street Tacoma, Washi:1gton 98406 Seed Exchange Director Jean Witt - 16516 25th, N.E. Seattle, Washington 98155 Species Robins Director- Lorena Reid 17225 McKenzie Highwa'i, Route 2 Springfield, Oregon 97477 Editor of SIGNA - - - Bill Gunther 740 Crest Road Del Ma.c, California 92014 phone , 14-755- 2798 Editor of Study Manual Roy Davidson- - 911 Western Avenue,,_ Number 200 Seattle, Washington !:18104 • • • • • • • • • • • SIGNA - - - Number 14 OCTOBER 1974 TABLE OF CONTENTS Cover--lris afghanica · Jean Witt - · · · 353 Notes on SIGNA 13 · - Roy Davidson - - · 355 It is a Gift! - - - - - Bill Gunther · · · 356 The Genus Iris: a review - - - - - - - P.J. Chittenden - - 357 Spuria Species as Garden Plants - E. -
Nature Conservation
J. Nat. Conserv. 11, – (2003) Journal for © Urban & Fischer Verlag http://www.urbanfischer.de/journals/jnc Nature Conservation Constructing Red Numbers for setting conservation priorities of endangered plant species: Israeli flora as a test case Yuval Sapir1*, Avi Shmida1 & Ori Fragman1,2 1 Rotem – Israel Plant Information Center, Dept. of Evolution, Systematics and Ecology,The Hebrew University, Jerusalem, 91904, Israel; e-mail: [email protected] 2 Present address: Botanical Garden,The Hebrew University, Givat Ram, Jerusalem 91904, Israel Abstract A common problem in conservation policy is to define the priority of a certain species to invest conservation efforts when resources are limited. We suggest a method of constructing red numbers for plant species, in order to set priorities in con- servation policy. The red number is an additive index, summarising values of four parameters: 1. Rarity – The number of sites (1 km2) where the species is present. A rare species is defined when present in 0.5% of the area or less. 2. Declining rate and habitat vulnerability – Evaluate the decreasing rate in the number of sites and/or the destruction probability of the habitat. 3. Attractivity – the flower size and the probability of cutting or exploitation of the plant. 4. Distribution type – scoring endemic species and peripheral populations. The plant species of Israel were scored for the parameters of the red number. Three hundred and seventy (370) species, 16.15% of the Israeli flora entered into the “Red List” received red numbers above 6. “Post Mortem” analysis for the 34 extinct species of Israel revealed an average red number of 8.7, significantly higher than the average of the current red list. -
These De Doctorat De L'universite Paris-Saclay
NNT : 2016SACLS250 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de doctorat (Biologie) Par Mlle Nour Abdel Samad Titre de la thèse (CARACTERISATION GENETIQUE DU GENRE IRIS EVOLUANT DANS LA MEDITERRANEE ORIENTALE) Thèse présentée et soutenue à « Beyrouth », le « 21/09/2016 » : Composition du Jury : M., Tohmé, Georges CNRS (Liban) Président Mme, Garnatje, Teresa Institut Botànic de Barcelona (Espagne) Rapporteur M., Bacchetta, Gianluigi Università degli Studi di Cagliari (Italie) Rapporteur Mme, Nadot, Sophie Université Paris-Sud (France) Examinateur Mlle, El Chamy, Laure Université Saint-Joseph (Liban) Examinateur Mme, Siljak-Yakovlev, Sonja Université Paris-Sud (France) Directeur de thèse Mme, Bou Dagher-Kharrat, Magda Université Saint-Joseph (Liban) Co-directeur de thèse UNIVERSITE SAINT-JOSEPH FACULTE DES SCIENCES THESE DE DOCTORAT DISCIPLINE : Sciences de la vie SPÉCIALITÉ : Biologie de la conservation Sujet de la thèse : Caractérisation génétique du genre Iris évoluant dans la Méditerranée Orientale. Présentée par : Nour ABDEL SAMAD Pour obtenir le grade de DOCTEUR ÈS SCIENCES Soutenue le 21/09/2016 Devant le jury composé de : Dr. Georges TOHME Président Dr. Teresa GARNATJE Rapporteur Dr. Gianluigi BACCHETTA Rapporteur Dr. Sophie NADOT Examinateur Dr. Laure EL CHAMY Examinateur Dr. Sonja SILJAK-YAKOVLEV Directeur de thèse Dr. Magda BOU DAGHER KHARRAT Directeur de thèse Titre : Caractérisation Génétique du Genre Iris évoluant dans la Méditerranée Orientale. Mots clés : Iris, Oncocyclus, région Est-Méditerranéenne, relations phylogénétiques, status taxonomique. Résumé : Le genre Iris appartient à la famille des L’approche scientifique est basée sur de nombreux Iridacées, il comprend plus de 280 espèces distribuées outils moléculaires et génétiques tels que : l’analyse de à travers l’hémisphère Nord. -
Positive and Negative Impacts of Non-Native Bee Species Around the World
Supplementary Materials: Positive and Negative Impacts of Non-Native Bee Species around the World Laura Russo Table S1. Selected references of potential negative impacts of Apis or Bombus species. Bold, underlined, and shaded text refers to citations with an empirical component while unbolded text refers to papers that refer to impacts only from a hypothetical standpoint. Light grey shading indicates species for which neither positive nor negative impacts have been recorded. “But see” refers to manuscripts that show evidence or describe the opposite of the effect and is capitalized when only contradictory studies could be found. Note that Apis mellifera scutellata (the “Africanized” honeybee), is treated separately given the abundance of research specifically studying that subspecies. Altering Non-native Nesting Floral Pathoens/ Invasive Introgres Decrease Pollination Species Sites Resources Parasites Weeds sion Plant Fitness Webs Apis cerana [1] [2] [1–3] [4] Apis dorsata Apis florea [5] [5] [37,45] But see [8–19] but [27–35] but [36–38] [39–43] [38,46,47] Apis mellifera [9,23–26] [4] [6,7] see [6,20–22] see [6] but see [44] [48,49] but see [50] Apis mellifera [51] but see [55–57] scutellata [52–54] Bombus [58,59] hortorum Bombus But see But see [60] [61] hypnorum [60] Bombus [62] [62,63] [26,64–66] [62] impatiens Bombus lucorum Bombus [28,58,59,6 [39] but see [67,68] [69,70] [36,39] ruderatus 9,71,72] [73] Bombus [59] subterraneous [67,70,74,75, [29,58,72,9 Bombus [25,26,70,7 [38,39,68,81,97,98 [4,76,88, [47,76,49,86,97 [74–76] 77–84] but 1–95] but terrestris 6,87–90] ] 99,100] ,101–103] see [85,86] see [96] Insects 2016, 7, 69; doi:10.3390/insects7040069 www.mdpi.com/journal/insects Insects 2016, 7, 69 S2 of S8 Table S2. -
Pollinator Limitation on Reproductive Success in Iris Tuberosa
Research Article Pollinator limitation on reproductive success in Iris tuberosa Giuseppe Pellegrino* Department of Biology, Ecology and Earth Science, University of Calabria, I-87036 Rende, Italy Received: 22 September 2014; Accepted: 8 December 2014; Published: 19 December 2014 Associate Editor: James F. Cahill Citation: Pellegrino G. 2015. Pollinator limitation on reproductive success in Iris tuberosa. AoB PLANTS 7: plu089; doi:10.1093/aobpla/plu089 Abstract. Variation in plant and floral size can have conflicting effects on pollination and fruit production in flower- ing plants. This research examines the contributions of plant height, flower size and pollinator visitation to reproduct- ive success in four populations of Iris tuberosa. The plants were pollinated exclusively by hymenopteran species, primarily during sunny days. Pollination supplementation increased the proportion of flowers that matured into fruit, with 95 % fruit set for hand-pollinated compared with 74.15 % for naturally pollinated flowers. The pollinator visitation rate and the proportion of fruit produced were not significantly different between tall and short plants or between small and large flowers. Furthermore, the increase in plant size and floral display did not increase the frequency of pollinator visitations and so did not increase the fruit set. Thus, despite the widespread effects of flower- ing plant size on pollinator attraction and plant reproduction in other species, these effects are lacking in I. tuberosa. This study quantifies the role of pollinators in the reproductive success of I. tuberosa. Pollinators visited tall/short plants and large/small flowers in equal proportion, suggesting that plant and floral display size do not affect pollinator attraction and reproductive success in I. -
Fine-Grained Flower Classification
Fine-Grained Flower Classification Ravid Cohen Prof Daphna Weinshall (Computer Science) Prof Avi Shmida (Botanic) The Hebrew University of Jerusalem 1. Introduction Recently models for fine-grained flower-based classification tasks, in particular models that use features from pre-trained convolutional neural network as an image representation, show outstanding results, with more than 95% mean class accuracy on the Oxford Flower Database [4][6][7]. It would seem that these emerging tools may be able to address the more realistic and challenging problems posed by the varying appearance of flowers in the wild, including ‘super-fine-grained’ classification tasks. In accordance, we collected a new and even more fine-grained database of Israeli wild flowers with varying levels of similarity between categories. We then followed the classification paradigm described in Razavian et al [1] to classify both the Oxford 102 flower database and the new one. Using the most recent representations based on deep learning networks, the results on the Oxford dataset are excellent, with 94.9% mean class accuracy. When training the same classifier with our database it achieved only 79.3%, an evidence for the higher challenge the Israel Flower Database poses. The Israel Flower Database is also unique in being hierarchical (genus and species), while being labeled with accurate scientific botanical names. 2. Databases Oxford Flowers 102 (OF 102) database [3] Oxford Flowers 102 consists of 8,189 images from 102 categories. Each category contains 40-258 images of common wild flowers in the UK. Most of the categories are genera rather than species and they are labeled using their common English name. -
Iris Section Oncocyclus) and Identification of Flower Development Genes
bioRxiv preprint doi: https://doi.org/10.1101/680363; this version posted June 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. De novo Transcriptome Characterization of Royal Iris (Iris section Oncocyclus) and Identification of Flower Development Genes Bar-Lev Yamit1, Senden Esther1, Pasmanik-Chor Metsada2 and Sapir Yuval1 1 The Botanical Garden, School of Plant Sciences and Food Security, G.S. Wise Faculty of Life Science, Tel Aviv University, Israel 2 Bioinformatics Unit, G.S. Wise Faculty of Life Science, Tel Aviv University, Tel Aviv 69978, Israel Bar-Lev Yamit [email protected], 972-3-6407354, Author for correspondence Senden Esther [email protected] Pasmanik-Chor Metsada [email protected] Sapir Yuval [email protected] Acknowledgements We thank the Technion Genome Center for technical assistance and the Bioinformatics Core Facility at Ben-Gurion University for their assistance in the bioinformatics analysis. We thank N. Kane for the Perl script for mining SSRs from transcriptome sequences. This research was funded by the Israel Science Foundation (grant No. 336/16). 1 bioRxiv preprint doi: https://doi.org/10.1101/680363; this version posted June 23, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
De Novo Transcriptome Characterization of Iris Atropurpurea (The Royal Iris, Iris Section Oncocyclus) and Phylogenetic Analysis
bioRxiv preprint doi: https://doi.org/10.1101/680363; this version posted September 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. De novo Transcriptome Characterization of Iris atropurpurea (the Royal Iris, Iris section Oncocyclus) and Phylogenetic Analysis of MADS-box and R2R3- MYB Gene Families Bar-Lev Yamit1, Senden Esther1, Pasmanik-Chor Metsada2, and Sapir Yuval1 1 The Botanical Garden, School of Plant Sciences and Food Security, G.S. Wise Faculty of Life Science, Tel Aviv University, Israel 2 Bioinformatics Unit, G.S. Wise Faculty of Life Science, Tel Aviv University, Tel Aviv 69978, Israel Bar-Lev Yamit [email protected], 972-3-6407354, Author for correspondence Senden Esther [email protected] Pasmanik-Chor Metsada [email protected] Sapir Yuval [email protected] Acknowledgments We thank the Technion Genome Center for technical assistance and the Bioinformatics Core Facility at Ben-Gurion University for their assistance in the bioinformatics analysis. We thank N. Kane for the Perl script for mining SSRs from transcriptome sequences. This research was funded by the Israel Science Foundation to YS (grant No. 336/16). 1 bioRxiv preprint doi: https://doi.org/10.1101/680363; this version posted September 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Complex Ex Situ - in Situ Approach for Conservation of Endangered Plant Species and Its Application to Iris Atrofusca of the Northern Negev
A peer-reviewed open-access journal BioRisk 3: 137–160Complex (2009) ex situ - in situ approach for conservation of endangered plant species... 137 doi: 10.3897/biorisk.3.5 RESEARCH ARTICLE www.pensoftonline.net/biorisk Biodiversity & Ecosystem Risk Assessment Complex ex situ - in situ approach for conservation of endangered plant species and its application to Iris atrofusca of the Northern Negev Sergei Volis1, Michael Blecher2, Yuval Sapir3 1 Life Sciences Department, Ben Gurion University of the Negev, Israel 2 Ein Gedi Nature Reserve, Israel Na- ture and Parks Authority, Israel 3 Porter School for Environmental Studies and Department of Plant Sciences, Tel Aviv University, Israel Corresponding author: Sergei Volis ([email protected]) Academic editors: L.J. Musselman, F. Krupp | Received 4 February 2009 | Accepted 14 December 2009 | Published 28 December 2009 Citation: Volis S, Blecher M, Sapir Y (2009) Complex ex situ - in situ approach for conservation of endangered plant species and its application to Iris atrofusca of the Northern Negev. In: Krupp F, Musselman LJ, Kotb MMA, Weidig I (Eds) Environment, Biodiversity and Conservation in the Middle East. Proceedings of the First Middle Eastern Biodiversity Congress, Aqaba, Jordan, 20–23 October 2008. BioRisk 3: 137–160. doi: 10.3897/biorisk.3.5 Abstract We introduce a novel approach for conservation of endangered plant species in which ex situ collections maintained in natural or semi-natural environment are a part of a complementary ex situ – in situ con- servation strategy. We provide detailed guidelines for 1) representative sampling of the populations; 2) collection maintenance; and 3) utilization for in situ actions. -
Local Adaptation in Four Iris Species Tested in a Common-Garden Experimentbij 1265 267..277
Biological Journal of the Linnean Society, 2009, 98, 267–277. With 6 figures Local adaptation in four Iris species tested in a common-garden experimentbij_1265 267..277 MICHAEL DORMAN*, YUVAL SAPIR† and SERGEI VOLIS Life Sciences Department, Ben-Gurion University of the Negev, PO Box 653, Beer Sheva 84105, Israel Received 11 February 2009; accepted for publication 25 March 2009 Local adaptation is a commonly observed result of natural selection acting in heterogeneous environment. Common-garden experiments are a method of detecting local adaptation, as well as studying phenotypic plasticity and gradients of traits. The present study aimed to analyse reaction norms of four closely-related Iris species of section Oncocyclus and to identify a role of environmentally-specific natural selection in their plastic responses. The plant vegetative and phenological, as well as performance traits were measured in a full factorial common-garden experiment with three levels of water amount and three soil types. We found a significant effect of species identity on all traits measured. Water amount and soil type affected many of the traits, but soil type did not affect the performance. There was no significant difference in the effect of water amount and soil type on performance as reflected by rhizome growth; in other words, there was no significant genotype ¥ environment interaction for performance. Plasticity levels and directions of response were also similar among the species. We conclude that phenotypic differences among species are of genetic origin, although no adaptive value was demonstrated for them at the time and life-stages ‘frame’ of this experiment. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society 2009, 98, 267–277. -
Discrimination of Common Iris Species from Egypt Based on Their Genetic and Metabolic Profiling
Received: 4 March 2020 Revised: 3 April 2020 Accepted: 4 April 2020 DOI: 10.1002/pca.2945 SPECIAL ISSUE ARTICLE Discrimination of common Iris species from Egypt based on their genetic and metabolic profiling Mona M. Okba1 | Passent M. Abdel Baki1 | Amal E. Khaleel1 | Moshera M. El-Sherei1 | Mohamed A. Salem2 1Department of Parmacognosy, Faculty of Pharmacy, Cairo University, Cairo, Egypt Abstract 2Department of Pharmacognosy, Faculty of Introduction: Irises have been medicinally used in Ancient Egyptians, Anatolian, Chi- Pharmacy, Menoufia University, Menoufia, nese, British and Irish folk medicine. They are also well-known ornamental plants that Egypt have economic value in the perfume industry. The main obvious diagnostic difference Correspondence between the different species is based on the morphology of the flowers. The Mona M. Okba, Department of Parmacognosy, Faculty of Pharmacy, Cairo University, Cairo flowering cycle is very short as well as the persistence of the fully opened flowers 11562, Egypt. extends for a few days only. Moreover, the climatic conditions significantly causes Email: [email protected] fluctuation in their blooming time from year to year. This makes the morphological discrimination very difficult. The discrimination of different iris species is of a great importance, as each species is reported to possess different folk medicinal activities. Objectives: Finding genetic and metabolic markers for differentiation between Iris confusa Sealy (Subgen. Limniris Sect. Lophiris), I. pseudacorus L. (Subgen. Limniris Sect. Limniris) and I. germanica L. (Subgen. Iris Sect. Iris) on levels other than traditional tax- onomic features. Material and Methods: Inter-simple sequence repeat (ISSR) and gas chromatography–mass spectrometry (GC–MS) analyses were performed.