Benthic Macroinvertebrate Sampling
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Supplementary Tales
Metabarcoding reveals different zooplankton communities in northern and southern areas of the North Sea Jan Niklas Macher, Berry B. van der Hoorn, Katja T. C. A. Peijnenburg, Lodewijk van Walraven, Willem Renema Supplementary tables 1-5 Table S1: Sampling stations and recorded abiotic variables recorded during the NICO 10 expedition from the Dutch Coast to the Shetland Islands Sampling site name Coordinates (°N, °E) Mean remperature (°C) Mean salinity (PSU) Depth (m) S74 59.416510, 0.499900 8.2 35.1 134 S37 58.1855556, 0.5016667 8.7 35.1 89 S93 57.36046, 0.57784 7.8 34.8 84 S22 56.5866667, 0.6905556 8.3 34.9 220 S109 56.06489, 1.59652 8.7 35 79 S130 55.62157, 2.38651 7.8 34.8 73 S156 54.88581, 3.69192 8.3 34.6 41 S176 54.41489, 4.04154 9.6 34.6 43 S203 53.76851, 4.76715 11.8 34.5 34 Table S2: Species list and read number per sampling site Class Order Family Genus Species S22 S37 S74 S93 S109 S130 S156 S176 S203 Copepoda Calanoida Acartiidae Acartia Acartia clausi 0 0 0 72 0 170 15 630 3995 Copepoda Calanoida Acartiidae Acartia Acartia tonsa 0 0 0 0 0 0 0 0 23 Hydrozoa Trachymedusae Rhopalonematidae Aglantha Aglantha digitale 0 0 0 0 1870 117 420 629 0 Actinopterygii Trachiniformes Ammodytidae Ammodytes Ammodytes marinus 0 0 0 0 0 263 0 35 0 Copepoda Harpacticoida Miraciidae Amphiascopsis Amphiascopsis cinctus 344 0 0 992 2477 2500 9574 8947 0 Ophiuroidea Amphilepidida Amphiuridae Amphiura Amphiura filiformis 0 0 0 0 219 0 0 1470 63233 Copepoda Calanoida Pontellidae Anomalocera Anomalocera patersoni 0 0 586 0 0 0 0 0 0 Bivalvia Venerida -
New Insights in the Biogeographical Distributions of Two Spionidae (Annelida) from the NE Atlantic and Mediterranean French Coasts
Zoosymposia 19: 173–184 (2020) ISSN 1178-9905 (print edition) https://www.mapress.com/j/zs ZOOSYMPOSIA Copyright © 2020 · Magnolia Press ISSN 1178-9913 (online edition) https://doi.org/10.11646/zoosymposia.19.1.18 http://zoobank.org/urn:lsid:zoobank.org:pub:7CF4D06E-47F9-48C5-9703-5CECFD9C1491 New insights in the biogeographical distributions of two Spionidae (Annelida) from the NE Atlantic and Mediterranean French coasts JÉRÔME JOURDE1,5*, NICOLAS LAVESQUE2,7, CÉLINE LABRUNE3,10, JEAN-MICHEL AMOUR- OUX3,12, PAULO BONIFÁCIO3,11, SUZIE HUMBERT2,8, BASTIEN LAMARQUE2,9, PIERRE-GUY SAURIAU1,6 & KARIN MEIßNER4,13 1La Rochelle Université, CNRS, UMR 7266 LIENSs, 2 rue Olympe de Gouges 17000 La Rochelle, France 2Université de Bordeaux, CNRS, UMR 5805 EPOC, Station Marine d’Arcachon, 2 rue du Professeur Jolyet, 33120 Arcachon, France 3Sorbonne Université, CNRS, UMR LECOB 8222, Laboratoire d’Ecogéochimie des Environnements Benthiques, Observatoire Océanologique de Banyuls, Avenue Pierre Fabre, 66650 Banyuls-sur-Mer, France 4Senckenberg Forschungsinstitute und Naturmuseen (SFN), Deutsches Zentrum für Marine Biodiversitätsforschung, Biozentrum Grindel, Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany 5 [email protected], https://orcid.org/0000-0001-7260-8419 6 [email protected], https://orcid.org/0000-0002-5360-8728 7 [email protected], https://orcid.org/0000-0001-5701-2393 8 [email protected], https://orcid.org/0000-0003-4254-3567 9 [email protected], https://orcid.org/0000-0002-1418-9049 10 [email protected], -
Boccardia Proboscidea Class: Polychaeta, Sedentaria, Canalipalpata
Phylum: Annelida Boccardia proboscidea Class: Polychaeta, Sedentaria, Canalipalpata Order: Spionida, Spioniformia A burrowing spionid worm Family: Spionidae Taxonomy: Boccardia proboscidea’s senior Trunk: subjective synonym, Polydora californica Posterior: Pygidium is a round, flaring (Treadwell, 1914) and an un-typified name, disc with four unequal lobes where dorsal Spio californica (Fewkes, 1889) were both lobes are smaller (Fig. 4) (Hartman 1969). suppressed in 2012 by the International Parapodia: Biramous after first setiger. Commission on Zoological Nomenclature Podia on the first setiger are not lobed, small (ICZN, case 3520). The widely cited and and inconspicuous. The second setiger's used name, Boccardia proboscidea parapodial lobes become twice as large as (Hartman, 1940) was conserved (ICZN the first's, and continue to worm posterior. 2012). Setae (chaetae): All setae are simple and in- clude bunches of short, capillary spines to se- Description tiger six (except for modified setiger five) Size: Specimens up to 30–35 mm in length (Figs. 5a, b). A transverse row of and 1.5 mm in width, where length extends approximately eight neuropodial uncini with age (Hartman 1940). The illustrated (hooded hooks) with bifid (two-pronged) tips specimen has approximately 130 segments begins on setiger seven and continues to (Fig. 1). posterior end (Fig. 5e), with bunches of Color: Yellow-orange with red branchiae capillary setae below them (until setiger 11). and dusky areas around prostomium and Notosetae of setiger five are heavy, dark and parapodia (Hartman 1969). Sato-Okoshi arranged vertically in two rows of five with and Okoshi (1997) report black pigment fol- pairs of long, falcate spines (Fig. -
Annelida, Polychaeta, Chaetopteridae), with Re- Chaetopteridae), with Re-Description of M
2 We would like to thank the Zoological Journal of the Linnean Society, The Linnean Society of London and Blackwell Publishing for accepting our manuscript entitled “Description of a Description of a new species of Mesochaetopterus (Annelida, Polychaeta, new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with re- Chaetopteridae), with re-description of M. xerecus and an approach to the description of M. xerecus and an approach to the phylogeny of the family”, which has phylogeny of the family been published in the Journal issue Zool. J. Linnean Soc. 2008, 152: 201–225. D. MARTIN1,* J. GIL1, J. CARRERAS-CARBONELL1 and M. BHAUD2 By posting this version of the manuscript (i.e. pre-printed), we agree not to sell or reproduce the Article or any part of it for commercial purposes (i.e. for monetary gain on your own 1Centre d'Estudis Avançats de Blanes (CSIC), Carrer d’accés a la Cala Sant Francesc 14, account or on that of a third party, or for indirect financial gain by a commercial entity), and 17300 Blanes (Girona), Catalunya (Spain). we expect the same from the users. 2 Observatoire Océanologique de Banyuls, Université P. et M. Curie - CNRS, BP 44, 66650 As soon as possible, we will add a link to the published version of the Article at the editors Banyuls-sur-Mer, Cedex, France. web site. * Correspondence author: Daniel Martin. Centre d'Estudis Avançats de Blanes (CSIC), Carrer Daniel Martin, Joao Gil, Michel Bhaud & Josep Carreras-Carbonell d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya (Spain). Tel. +34972336101; Fax: +34 972337806; E-mail: [email protected]. -
An Analysis of Bivalve Larval Shell Pigments Using Microraman
Research article Received: 13 August 2013 Revised: 24 February 2014 Accepted: 6 March 2014 Published online in Wiley Online Library: 1 April 2014 (wileyonlinelibrary.com) DOI 10.1002/jrs.4470 An analysis of bivalve larval shell pigments using micro-Raman spectroscopy Christine M. Thompson,a* Elizabeth W. North,a Sheri N. Whiteb and Scott M. Gallagerb Micro-Raman spectroscopy has been used on adult bivalve shells to investigate organic and inorganic shell components but has not yet been applied to bivalve larvae. It is known that the organic matrix of larval shells contains pigments, but less is known about the presence or source of these molecules in larvae. We investigated Raman spectra of seven species of bivalve larvae to assess the types of pigments present in shells of each species and how the ratio of inorganic : organic material changes in a dorso-ventral direction. In laboratory experiments, we reared larvae of three clam species in waters containing different organic signatures to determine if larvae incorporated compounds from source waters into their shells. We found differences in spectra and pigments between most species but found less intraspecific differences. A neural network classifier for Raman spectra classified five out of seven species with greater than 85% accuracy. There were slight differences between the amount and type of pigment present along the shell, with the prodissoconch I and shell margin areas being the most variable. Raman spectra of 1-day-old larvae were found to be differentiable when larvae were reared in waters with different organic signatures. With micro-Raman spectroscopy, it may be possible to identify some unknown species in the wild and trace their natal origins, which could enhance identification accuracy of bivalve larvae and ultimately aid management and restoration efforts. -
Archaeomalacological Data and Paleoenvironmental
ARCHAEOMALACOLOGICAL DATA AND PALEOENVIRONMENTAL RECONSTRUCTION AT THE JUPITER INLET I SITE (8PB34A), SOUTHEAST FLORIDA by Jennifer Green A Thesis Submitted to the Faculty of The Dorothy F. Schmidt College of Arts and Letters In Partial Fulfillment of the Requirements for the Degree of Master of Arts Florida Atlantic University Boca Raton, FL May 2016 Copyright 2016 by Jennifer Green ii ACKNOWLEDGEMENTS This thesis has been a journey of growth and exploration. There are several people who deserve recognition for my path of success. First, and foremost, I could have never gotten to where I am without the love and never-ending support of my parents. My dad initially stimulated my interest in archaeology as a kid. He took me to see my first site on Captiva Island during a vacation, and since then I was hooked. In addition, my mom has always been there to listen, and provide compassion and support in any way needed. My thesis advisor Dr. Arlene Fradkin deserves special recognition. If not for her agreeing to take me on as a Master’s student, I may have never gotten the opportunity to grow as a scholar. Her meticulous zooarchaeological practices have imprinted on me and have provided the baseline for all of my future endeavors. The time she has spent side- by-side with me proof-reading all of my documents has granted me several awards and grants throughout my studies, for which I am extremely thankful. Dr. Clifford Brown is one of the most brilliant men I know and his comprehensive knowledge of archaeological science will always amaze me. -
Mitochondrial Genomes of Two Polydora
www.nature.com/scientificreports OPEN Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved Lingtong Ye1*, Tuo Yao1, Jie Lu1, Jingzhe Jiang1 & Changming Bai2 Contrary to the early evidence, which indicated that the mitochondrial architecture in one of the two major annelida clades, Sedentaria, is relatively conserved, a handful of relatively recent studies found evidence that some species exhibit elevated rates of mitochondrial architecture evolution. We sequenced complete mitogenomes belonging to two congeneric shell-boring Spionidae species that cause considerable economic losses in the commercial marine mollusk aquaculture: Polydora brevipalpa and Polydora websteri. The two mitogenomes exhibited very similar architecture. In comparison to other sedentarians, they exhibited some standard features, including all genes encoded on the same strand, uncommon but not unique duplicated trnM gene, as well as a number of unique features. Their comparatively large size (17,673 bp) can be attributed to four non-coding regions larger than 500 bp. We identifed an unusually large (putative) overlap of 14 bases between nad2 and cox1 genes in both species. Importantly, the two species exhibited completely rearranged gene orders in comparison to all other available mitogenomes. Along with Serpulidae and Sabellidae, Polydora is the third identifed sedentarian lineage that exhibits disproportionally elevated rates of mitogenomic architecture rearrangements. Selection analyses indicate that these three lineages also exhibited relaxed purifying selection pressures. Abbreviations NCR Non-coding region PCG Protein-coding gene Metazoan mitochondrial genomes (mitogenomes) usually encode the set of 37 genes, comprising 2 rRNAs, 22 tRNAs, and 13 proteins, encoded on both genomic strands. -
To Down Load Appendix 1
APPENDIX 1 Chapter 1 Pictures of dominant species ................................................................................................................................. 2 Species inventory of micro-invertebrate species found ....................................................................................... 16 Bathymetry Map of Pleasant Bay ........................................................................................................................ 18 Eelgrass Locations in Pleasant Bay ..................................................................................................................... 19 Sidescan Map of Pleasant Bay ............................................................................................................................. 20 Chapter 2 Species inventory of macro-invertebrate and fish species by gear type .............................................................. 21 Chapter 3 Prey otoliths and hard parts recovered during seal scat processing ..................................................................... 24 1 Pictures of dominant species Disclaimer: biological samples were treated with ethanol and Rose Bengal in the laboratory to preserve the samples. Rose Bengal is a stain commonly used in microscopy and stains cell tissue a bright pink. This is useful in the visual detection of microscopic animals in sediment samples. An overwhelming majority of micro invertebrate species do not have common names. The common names used here are listed in Pollock’s “A Practical Guide -
A Bioturbation Classification of European Marine Infaunal
A bioturbation classification of European marine infaunal invertebrates Ana M. Queiros 1, Silvana N. R. Birchenough2, Julie Bremner2, Jasmin A. Godbold3, Ruth E. Parker2, Alicia Romero-Ramirez4, Henning Reiss5,6, Martin Solan3, Paul J. Somerfield1, Carl Van Colen7, Gert Van Hoey8 & Stephen Widdicombe1 1Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, U.K. 2The Centre for Environment, Fisheries and Aquaculture Science, Pakefield Road, Lowestoft, NR33 OHT, U.K. 3Department of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Waterfront Campus, European Way, Southampton SO14 3ZH, U.K. 4EPOC – UMR5805, Universite Bordeaux 1- CNRS, Station Marine d’Arcachon, 2 Rue du Professeur Jolyet, Arcachon 33120, France 5Faculty of Biosciences and Aquaculture, University of Nordland, Postboks 1490, Bodø 8049, Norway 6Department for Marine Research, Senckenberg Gesellschaft fu¨ r Naturforschung, Su¨ dstrand 40, Wilhelmshaven 26382, Germany 7Marine Biology Research Group, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium 8Bio-Environmental Research Group, Institute for Agriculture and Fisheries Research (ILVO-Fisheries), Ankerstraat 1, Ostend 8400, Belgium Keywords Abstract Biodiversity, biogeochemical, ecosystem function, functional group, good Bioturbation, the biogenic modification of sediments through particle rework- environmental status, Marine Strategy ing and burrow ventilation, is a key mediator of many important geochemical Framework Directive, process, trait. processes in marine systems. In situ quantification of bioturbation can be achieved in a myriad of ways, requiring expert knowledge, technology, and Correspondence resources not always available, and not feasible in some settings. Where dedi- Ana M. Queiros, Plymouth Marine cated research programmes do not exist, a practical alternative is the adoption Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, U.K. -
Download Full Article 2.4MB .Pdf File
Memoirs of Museum Victoria 71: 217–236 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars EIVIND OUG1,* (http://zoobank.org/urn:lsid:zoobank.org:author:EF42540F-7A9E-486F-96B7-FCE9F94DC54A), TORKILD BAKKEN2 (http://zoobank.org/urn:lsid:zoobank.org:author:FA79392C-048E-4421-BFF8-71A7D58A54C7) AND JON ANDERS KONGSRUD3 (http://zoobank.org/urn:lsid:zoobank.org:author:4AF3F49E-9406-4387-B282-73FA5982029E) 1 Norwegian Institute for Water Research, Region South, Jon Lilletuns vei 3, NO-4879 Grimstad, Norway ([email protected]) 2 Norwegian University of Science and Technology, University Museum, NO-7491 Trondheim, Norway ([email protected]) 3 University Museum of Bergen, University of Bergen, PO Box 7800, NO-5020 Bergen, Norway ([email protected]) * To whom correspondence and reprint requests should be addressed. E-mail: [email protected] Abstract Oug, E., Bakken, T. and Kongsrud, J.A. 2014. Original specimens and type localities of early described polychaete species (Annelida) from Norway, with particular attention to species described by O.F. Müller and M. Sars. Memoirs of Museum Victoria 71: 217–236. Early descriptions of species from Norwegian waters are reviewed, with a focus on the basic requirements for re- assessing their characteristics, in particular, by clarifying the status of the original material and locating sampling sites. A large number of polychaete species from the North Atlantic were described in the early period of zoological studies in the 18th and 19th centuries. -
Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora)
Gulf of Mexico Science Volume 34 Article 4 Number 1 Number 1/2 (Combined Issue) 2018 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution Martha Reguero Universidad Nacional Autónoma de México Andrea Raz-Guzmán Universidad Nacional Autónoma de México DOI: 10.18785/goms.3401.04 Follow this and additional works at: https://aquila.usm.edu/goms Recommended Citation Reguero, M. and A. Raz-Guzmán. 2018. Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution. Gulf of Mexico Science 34 (1). Retrieved from https://aquila.usm.edu/goms/vol34/iss1/4 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf of Mexico Science by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Reguero and Raz-Guzmán: Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Lagu Gulf of Mexico Science, 2018(1), pp. 32–55 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution MARTHA REGUERO AND ANDREA RAZ-GUZMA´ N Molluscs were collected in Laguna Madre from seagrass beds, macroalgae, and bare substrates with a Renfro beam net and an otter trawl. The species list includes 96 species and 48 families. Six species are dominant (Bittiolum varium, Costoanachis semiplicata, Brachidontes exustus, Crassostrea virginica, Chione cancellata, and Mulinia lateralis) and 25 are commercially important (e.g., Strombus alatus, Busycoarctum coarctatum, Triplofusus giganteus, Anadara transversa, Noetia ponderosa, Brachidontes exustus, Crassostrea virginica, Argopecten irradians, Argopecten gibbus, Chione cancellata, Mercenaria campechiensis, and Rangia flexuosa). -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber .........................................................................