The Actin Filament-Severing Domain of Plasma Gelsolin Christine Chaponnier, Paul A
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October 2020
PCORI Health Care Horizon Scanning System: Horizon Scanning COVID-19 Supplement Status Report Volume 1, Issue 2 Prepared for: Patient-Centered Outcomes Research Institute 1828 L St., NW, Suite 900 Washington, DC 20036 Contract No. MSA-HORIZSCAN-ECRI-ENG-2018.7.12 Prepared by: ECRI 5200 Butler Pike Plymouth Meeting, PA 19462 Investigators: Randy Hulshizer, MA, MS Marcus Lynch, PhD, MBA Jennifer De Lurio, MS Brian Wilkinson, MA Damian Carlson, MS Christian Cuevas, PhD Andrea Druga, MSPAS, PA-C Misha Mehta, MS Prital Patel, MPH Donna Beales, MLIS Eloise DeHaan, BS Eileen Erinoff, MSLIS Cassia Hulshizer, AS Madison Kimball, MS Maria Middleton, MPH Diane Robertson, BA Kelley Tipton, MPH Rosemary Walker, MLIS Karen Schoelles, MD, SM October 2020 Statement of Funding and Purpose This report incorporates data collected during implementation of the Patient-Centered Outcomes Research Institute (PCORI) Health Care Horizon Scanning System COVID-19 Supplement, operated by ECRI under contract to PCORI, Washington, DC (Contract No. MSA- HORIZSCAN-ECRI-ENG-2018.7.12). The findings and conclusions in this document are those of the authors, who are responsible for its content. No statement in this report should be construed as an official position of PCORI. An innovation that potentially meets inclusion criteria might not appear in this report simply because the horizon scanning system has not yet detected it or it does not yet meet inclusion criteria outlined in the PCORI Health Care Horizon Scanning System: Horizon Scanning Protocol and Operations Manual COVID-19 Supplement. Inclusion or absence of innovations in the horizon scanning reports will change over time as new information is collected; therefore, inclusion or absence should not be construed as either an endorsement or rejection of specific interventions. -
Families and the Structural Relatedness Among Globular Proteins
Protein Science (1993), 2, 884-899. Cambridge University Press. Printed in the USA. Copyright 0 1993 The Protein Society -~~ ~~~~ ~ Families and the structural relatedness among globular proteins DAVID P. YEE AND KEN A. DILL Department of Pharmaceutical Chemistry, University of California, San Francisco, California94143-1204 (RECEIVEDJanuary 6, 1993; REVISEDMANUSCRIPT RECEIVED February 18, 1993) Abstract Protein structures come in families. Are families “closely knit” or “loosely knit” entities? We describe a mea- sure of relatedness among polymer conformations. Based on weighted distance maps, this measure differs from existing measures mainly in two respects: (1) it is computationally fast, and (2) it can compare any two proteins, regardless of their relative chain lengths or degree of similarity. It does not require finding relative alignments. The measure is used here to determine the dissimilarities between all 12,403 possible pairs of 158 diverse protein structures from the Brookhaven Protein Data Bank (PDB). Combined with minimal spanning trees and hier- archical clustering methods,this measure is used to define structural families. It is also useful for rapidly searching a dataset of protein structures for specific substructural motifs.By using an analogy to distributions of Euclid- ean distances, we find that protein families are not tightly knit entities. Keywords: protein family; relatedness; structural comparison; substructure searches Pioneering work over the past 20 years has shown that positions after superposition. RMS is a useful distance proteins fall into families of related structures (Levitt & metric for comparingstructures that arenearly identical: Chothia, 1976; Richardson, 1981; Richardson & Richard- for example, when refining or comparing structures ob- son, 1989; Chothia & Finkelstein, 1990). -
The Cardiac-Specific N-Terminal Region of Troponin I Positions the Regulatory Domain of Troponin C
The cardiac-specific N-terminal region of troponin I positions the regulatory domain of troponin C Peter M. Hwanga,b,1, Fangze Caib, Sandra E. Pineda-Sanabriab, David C. Corsonb, and Brian D. Sykesb aDivision of General Internal Medicine, Department of Medicine, and bDepartment of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, Canada T6G 2H7 Edited by David Baker, University of Washington, Seattle, WA, and approved August 29, 2014 (received for review June 11, 2014) The cardiac isoform of troponin I (cTnI) has a unique 31-residue phosphorylation levels occur in a number of pathologic states, N-terminal region that binds cardiac troponin C (cTnC) to increase including heart failure with reduced ejection fraction, heart failure the calcium sensitivity of the sarcomere. The interaction can be with preserved ejection fraction, dilated cardiomyopathy, and hy- abolished by cTnI phosphorylation at Ser22 and Ser23, an impor- pertrophic cardiomyopathy (5, 8). Although dephosphorylation tant mechanism for regulating cardiac contractility. cTnC contains is likely a compensatory mechanism in many cases, it may be a two EF–hand domains (the N and C domain of cTnC, cNTnC and disease-driving dysregulation in others. cCTnC) connected by a flexible linker. Calcium binding to either Other regulatory mechanisms are strongly influenced by the domain favors an “open” conformation, exposing a large hydro- phosphorylation state of Ser22/23. The Frank–Starling law of the phobic surface that is stabilized by target binding, cTnI[148–158] heart, also known as length-dependent activation or stretch ac- for cNTnC and cTnI[39–60] for cCTnC. We used multinuclear multi- tivation, is more pronounced when Ser22/23 are phosphorylated – dimensional solution NMR spectroscopy to study cTnI[1 73] in (9, 10). -
CCN3 and Calcium Signaling Alain Lombet1, Nathalie Planque2, Anne-Marie Bleau2, Chang Long Li2 and Bernard Perbal*2
Cell Communication and Signaling BioMed Central Review Open Access CCN3 and calcium signaling Alain Lombet1, Nathalie Planque2, Anne-Marie Bleau2, Chang Long Li2 and Bernard Perbal*2 Address: 1CNRS UMR 8078, Hôpital Marie Lannelongue, 133, Avenue de la Résistance 92350 Le PLESSIS-ROBINSON, France and 2Laboratoire d'Oncologie Virale et Moléculaire, Tour 54, Case 7048, Université Paris 7-D.Diderot, 2 Place Jussieu 75005 PARIS, France Email: Alain Lombet - [email protected]; Nathalie Planque - [email protected]; Anne-Marie Bleau - [email protected]; Chang Long Li - [email protected]; Bernard Perbal* - [email protected] * Corresponding author Published: 15 August 2003 Received: 26 June 2003 Accepted: 15 August 2003 Cell Communication and Signaling 2003, 1:1 This article is available from: http://www.biosignaling.com/content/1/1/1 © 2003 Lombet et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Abstract The CCN family of genes consists presently of six members in human (CCN1-6) also known as Cyr61 (Cystein rich 61), CTGF (Connective Tissue Growth Factor), NOV (Nephroblastoma Overexpressed gene), WISP-1, 2 and 3 (Wnt-1 Induced Secreted Proteins). Results obtained over the past decade have indicated that CCN proteins are matricellular proteins, which are involved in the regulation of various cellular functions, such as proliferation, differentiation, survival, adhesion and migration. The CCN proteins have recently emerged as regulatory factors involved in both internal and external cell signaling. -
Evidence for Rho Kinase Pathway
Oncogene (2001) 20, 2112 ± 2121 ã 2001 Nature Publishing Group All rights reserved 0950 ± 9232/01 $15.00 www.nature.com/onc Cytoskeletal organization in tropomyosin-mediated reversion of ras-transformation: Evidence for Rho kinase pathway Vanya Shah3, Shantaram Bharadwaj1,2, Kozo Kaibuchi4 and GL Prasad*,1,2 1Department of General Surgery, Wake Forest University School of Medicine, Winston-Salem, North Carolina, NC 27157, USA; 2Department of Cancer Biology, Wake Forest University School of Medicine, Winston-Salem, North Carolina, NC 27157, USA; 3Wistar Institute of Anatomy and Cell Biology, Philadelphia, Pennsylvania, USA; 4Nara Institute of Science and Technology Ikoma, Japan Tropomyosin (TM) family of cytoskeletal proteins is and tropomyosins (TMs) are suppressed to varying implicated in stabilizing actin micro®laments. Many TM degrees in many transformed cells (Ben-Ze'ev, 1997). isoforms, including tropomyosin-1 (TM1), are down- Furthermore, restoration of these proteins inhibits the regulated in transformed cells. Previously we demon- malignant phenotype of many dierent experimentally strated that TM1 is a suppressor of the malignant transformed cell lines, underscoring the pivotal role of transformation, and that TM1 reorganizes micro®la- cytoskeletal organization in maintaining a normal ments in the transformed cells. To investigate how TM1 phenotype (Ayscough, 1998; Janmey and Chaponnier, induces micro®lament organization in transformed cells, 1995). Our laboratory has been interested in under- we utilized ras-transformed NIH3T3 (DT) cells, and standing the role of cytoskeletal proteins, in particular those transduced to express TM1, and/or TM2. that of tropomyosins, in malignant transformation. Enhanced expression of TM1 alone, but not TM2, Tropomyosin (TM) family comprises of 5 ± 7 results in re-emergence of micro®laments; TM1, together dierent closely related isoforms, whose expression is with TM2 remarkably improves micro®lament architec- altered in many transformed cells (Lin et al., 1997; ture. -
Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane
cells Article Ca2+–Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane Md. Shahabe Uddin Talukder 1,2, Mst. Shaela Pervin 1,3, Md. Istiaq Obaidi Tanvir 1, Koushiro Fujimoto 1, Masahito Tanaka 1, Go Itoh 4 and Shigehiko Yumura 1,* 1 Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi 753-8511, Japan; [email protected] (M.S.U.T.); [email protected] (M.S.P.); [email protected] (M.I.O.T.); [email protected] (K.F.); [email protected] (M.T.) 2 Institute of Food and Radiation Biology, AERE, Bangladesh Atomic Energy Commission, Savar, Dhaka 3787, Bangladesh 3 Rajshahi Diabetic Association General Hospital, Luxmipur, Jhautala, Rajshahi 6000, Bangladesh 4 Department of Molecular Medicine and Biochemistry, Akita University Graduate School of Medicine, Akita 010-8543, Japan; [email protected] * Correspondence: [email protected]; Tel./Fax: +81-83-933-5717 Received: 2 April 2020; Accepted: 21 April 2020; Published: 23 April 2020 Abstract: Wound repair of cell membrane is a vital physiological phenomenon. We examined wound repair in Dictyostelium cells by using a laserporation, which we recently invented. We examined the influx of fluorescent dyes from the external medium and monitored the cytosolic Ca2+ after wounding. The influx of Ca2+ through the wound pore was essential for wound repair. Annexin and ESCRT components accumulated at the wound site upon wounding as previously described in animal cells, but these were not essential for wound repair in Dictyostelium cells. We discovered that calmodulin accumulated at the wound site upon wounding, which was essential for wound repair. -
Calmodulin: a Prototypical Calcium Sensor
TCB 08/00 paste-up 30/6/00 8:54 am Page 322 reviews Calmodulin: a the Ca21 signal. Hence, separate intracellular loci or organelles are potentially distinct compartments of prototypical localized Ca21 signalling2 (Fig. 1a). Therefore, Ca21 signals in the nucleus exert different effects from those generated in the cytoplasm or near the plasma calcium sensor membrane of the same cell3. Additionally, the modulation of the amplitude or frequency of Ca21 spikes (AM and FM, respectively) encodes important David Chin and Anthony R. Means signalling information4. This has recently been illustrated for cases in which an optimal frequency of intracellular Ca21 oscillations is important for the Calmodulin is the best studied and prototypical example of the expression of different genes5. 21 E–F-hand family of Ca -sensing proteins. Changes in Calcium-regulated proteins: calmodulin 21 intracellular Ca21 concentration regulate calmodulin in three How do Ca signals produce changes in cell func- tion? The information encoded in transient Ca21 distinct ways. First, at the cellular level, by directing its signals is deciphered by various intracellular Ca21- binding proteins that convert the signals into a wide subcellular distribution. Second, at the molecular level, by variety of biochemical changes. Some of these 21 promoting different modes of association with many target proteins, such as protein kinase C, bind to Ca and are directly regulated in a Ca21-dependent manner. proteins. Third, by directing a variety of conformational states in Other Ca21-binding proteins, however, are inter- mediaries that couple the Ca21 signals to biochemical calmodulin that result in target-specific activation. -
Calmodulin Binding Proteins and Alzheimer's Disease
International Journal of Molecular Sciences Review Calmodulin Binding Proteins and Alzheimer’s Disease: Biomarkers, Regulatory Enzymes and Receptors That Are Regulated by Calmodulin Danton H. O’Day 1,2 1 Cell and Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada; [email protected] 2 Department of Biology, University of Toronto Mississauga, Mississauga, ON L5L 1C6, Canada Received: 18 September 2020; Accepted: 3 October 2020; Published: 5 October 2020 Abstract: The integral role of calmodulin in the amyloid pathway and neurofibrillary tangle formation in Alzheimer’s disease was first established leading to the “Calmodulin Hypothesis”. Continued research has extended our insight into the central function of the small calcium sensor and effector calmodulin and its target proteins in a multitude of other events associated with the onset and progression of this devastating neurodegenerative disease. Calmodulin’s involvement in the contrasting roles of calcium/CaM-dependent kinase II (CaMKII) and calcineurin (CaN) in long term potentiation and depression, respectively, and memory impairment and neurodegeneration are updated. The functions of the proposed neuronal biomarker neurogranin, a calmodulin binding protein also involved in long term potentiation and depression, is detailed. In addition, new discoveries into calmodulin’s role in regulating glutamate receptors (mGluR, NMDAR) are overviewed. The interplay between calmodulin and amyloid beta in the regulation of PMCA and ryanodine receptors are prime examples of how the buildup of classic biomarkers can underly the signs and symptoms of Alzheimer’s. The role of calmodulin in the function of stromal interaction molecule 2 (STIM2) and adenosine A2A receptor, two other proteins linked to neurodegenerative events, is discussed. -
New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System
brain sciences Review New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System Krisztina Kelemen * and Tibor Szilágyi Department of Physiology, Doctoral School, Faculty of Medicine, George Emil Palade University of Medicine, Pharmacy, Science, and Technology of Targu Mures, 540142 Târgu Mures, , Romania; [email protected] * Correspondence: [email protected]; Tel.: +40-746-248064 Abstract: Although Ca2+ ion plays an essential role in cellular physiology, calcium-binding proteins (CaBPs) were long used for mainly as immunohistochemical markers of specific cell types in different regions of the central nervous system. They are a heterogeneous and wide-ranging group of proteins. Their function was studied intensively in the last two decades and a tremendous amount of informa- tion was gathered about them. Girard et al. compiled a comprehensive list of the gene-expression profiles of the entire EF-hand gene superfamily in the murine brain. We selected from this database those CaBPs which are related to information processing and/or neuronal signalling, have a Ca2+- buffer activity, Ca2+-sensor activity, modulator of Ca2+-channel activity, or a yet unknown function. In this way we created a gene function-based selection of the CaBPs. We cross-referenced these findings with publicly available, high-quality RNA-sequencing and in situ hybridization databases (Human Protein Atlas (HPA), Brain RNA-seq database and Allen Brain Atlas integrated into the HPA) and created gene expression heat maps of the regional and cell type-specific expression levels of the selected CaBPs. This represents a useful tool to predict and investigate different expression patterns and functions of the less-known CaBPs of the central nervous system. -
Cytoskeletal Remodeling in Cancer
biology Review Cytoskeletal Remodeling in Cancer Jaya Aseervatham Department of Ophthalmology, University of Texas Health Science Center at Houston, Houston, TX 77054, USA; [email protected]; Tel.: +146-9767-0166 Received: 15 October 2020; Accepted: 4 November 2020; Published: 7 November 2020 Simple Summary: Cell migration is an essential process from embryogenesis to cell death. This is tightly regulated by numerous proteins that help in proper functioning of the cell. In diseases like cancer, this process is deregulated and helps in the dissemination of tumor cells from the primary site to secondary sites initiating the process of metastasis. For metastasis to be efficient, cytoskeletal components like actin, myosin, and intermediate filaments and their associated proteins should co-ordinate in an orderly fashion leading to the formation of many cellular protrusions-like lamellipodia and filopodia and invadopodia. Knowledge of this process is the key to control metastasis of cancer cells that leads to death in 90% of the patients. The focus of this review is giving an overall understanding of these process, concentrating on the changes in protein association and regulation and how the tumor cells use it to their advantage. Since the expression of cytoskeletal proteins can be directly related to the degree of malignancy, knowledge about these proteins will provide powerful tools to improve both cancer prognosis and treatment. Abstract: Successful metastasis depends on cell invasion, migration, host immune escape, extravasation, and angiogenesis. The process of cell invasion and migration relies on the dynamic changes taking place in the cytoskeletal components; actin, tubulin and intermediate filaments. This is possible due to the plasticity of the cytoskeleton and coordinated action of all the three, is crucial for the process of metastasis from the primary site. -
Increased Levels of Sphingosine-1-Phosphate In
Kułakowska et al. Journal of Neuroinflammation 2014, 11:193 JOURNAL OF http://www.jneuroinflammation.com/content/11/1/193 NEUROINFLAMMATION RESEARCH Open Access Increased levels of sphingosine-1-phosphate in cerebrospinal fluid of patients diagnosed with tick-borne encephalitis Alina Kułakowska1, Fitzroy J Byfield2,Małgorzata Żendzian-Piotrowska3, Joanna M Zajkowska4, Wiesław Drozdowski1, Barbara Mroczko5, Paul A Janmey2 and Robert Bucki2,6,7* Abstract Background: Tick-borne encephalitis (TBE) is a serious acute central nervous system infection that can result in death or long-term neurological dysfunctions. We hypothesize that changes in sphingosine-1-phosphate (S1P) concentration occur during TBE development. Methods: S1P and interleukin-6 (IL-6) concentrations in blood plasma and cerebrospinal fluid (CSF) were measured using HPLC and ELISA, respectively. The effects of S1P on cytoskeletal structure and IL-6 production were assessed using rat astrocyte primary cultures with and without addition of plasma gelsolin and the S1P receptor antagonist fingolimod phosphate (FTY720P). Results: We report that acute inflammation due to TBE virus infection is associated with elevated levels of S1P and IL-6 in the CSF of infected patients. This elevated concentration is observed even at the earliest neurologic stage of disease, and may be controlled by glucocorticosteroid anti-inflammatory treatment, administered to patients unresponsive to antipyretic drugs and who suffer from a fever above 39°C. In vitro, treatment of confluent rat astrocyte monolayers with a high concentration of S1P (5 μM) results in cytoskeletal actin remodeling that can be prevented by the addition of recombinant plasma gelsolin, FTY720P, or their combination. Additionally, gelsolin and FTY720P significantly decreased S1P-induced release of IL-6. -
Calmodulin-Androgen Receptor (AR) Interaction: Calcium- Dependent, Calpain-Mediated Breakdown of AR in Lncapprostatecancer Cells
Research Article Calmodulin-Androgen Receptor (AR) Interaction: Calcium- Dependent, Calpain-Mediated Breakdown of AR in LNCaPProstateCancer Cells Ronald P. Pelley,1 Kannagi Chinnakannu,1 Shalini Murthy,1 Faith M. Strickland,2 Mani Menon,1 Q. Ping Dou,3 Evelyn R. Barrack,1 and G. Prem-Veer Reddy1,3 1Vattikuti Urology Institute and 2Department of Dermatology, Henry Ford Hospital; 3Karmanos Cancer Institute and Department of Pathology, Wayne State University School of Medicine, Detroit, Michigan Abstract Introduction Chemotherapy of prostate cancer targets androgen receptor Adenocarcinoma of the prostate is the most frequently (AR) by androgen ablation or antiandrogens, but unfortu- diagnosed cancer and second leading cause of cancer deaths in nately, it is not curative. Our attack on prostate cancer American men (1). Although androgen ablation is the most envisions the proteolytic elimination of AR, which requires a common therapy for disseminated prostate cancer, it is palliative fuller understanding of AR turnover. We showed previously in nature and most patients eventually succumb to hormone- that calmodulin (CaM) binds to AR with important con- refractory disease resistant to chemotherapy. Whether normal or sequences for AR stability and function. To examine the mutated, androgen receptor (AR) is required for growth in both involvement of Ca2+/CaM in the proteolytic breakdown of AR, androgen-sensitive and androgen-insensitive prostate cancer (2). we analyzed LNCaP cell extracts that bind to a CaM affinity Therefore, it is of paramount importance to dissect the various column for the presence of low molecular weight forms of AR ways in which AR is regulated to not simply inactivate but to (intact AR size, f114 kDa).