Calmodulin Binding Proteins and Alzheimer's Disease
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Report STIM1 Is a Calcium Sensor Specialized for Digital Signaling
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 19, 1724–1729, November 3, 2009 ª2009 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2009.08.022 Report STIM1 Is a Calcium Sensor Specialized for Digital Signaling Gary S. Bird,1 Sung-Yong Hwang,1 Jeremy T. Smyth,1 by immunoblot, we saw no difference in Orai1 levels between Miwako Fukushima,1 Rebecca R. Boyles,1 cells transfected with 0.5 mg cDNA/well and those transfected and James W. Putney, Jr.1,* with 2.0 mg cDNA/well (not shown). 1Laboratory of Signal Transduction, National Institute of Environmental Health Sciences, National Institutes of Health, Effect of STIM2 Expression and Knockdown on Calcium Department of Health and Human Services, P. O. Box 12233, Oscillations Research Triangle Park, North Carolina 27709, USA Activation of HEK293 cells with low concentrations of the PLC- linked agonist methacholine (MeCh) results in repetitive cyto- plasmic calcium transients, or oscillations. An underlying entry Summary of Ca2+ maintains these oscillations, and it has been sug- gested that this entry could be activated by arachidonic acid When cells are activated by calcium-mobilizing agonists at [8]. However, more recent work demonstrated that the entry low, physiological concentrations, the resulting calcium associated with oscillations in HEK293 cells is SOCE [2, 9]. signals generally take the form of repetitive regenerative Thus, maintenance of MeCh-induced calcium oscillations discharges of stored calcium, termed calcium oscillations depends on SOCE but involves minimal depletion of ER cal- [1]. -
Families and the Structural Relatedness Among Globular Proteins
Protein Science (1993), 2, 884-899. Cambridge University Press. Printed in the USA. Copyright 0 1993 The Protein Society -~~ ~~~~ ~ Families and the structural relatedness among globular proteins DAVID P. YEE AND KEN A. DILL Department of Pharmaceutical Chemistry, University of California, San Francisco, California94143-1204 (RECEIVEDJanuary 6, 1993; REVISEDMANUSCRIPT RECEIVED February 18, 1993) Abstract Protein structures come in families. Are families “closely knit” or “loosely knit” entities? We describe a mea- sure of relatedness among polymer conformations. Based on weighted distance maps, this measure differs from existing measures mainly in two respects: (1) it is computationally fast, and (2) it can compare any two proteins, regardless of their relative chain lengths or degree of similarity. It does not require finding relative alignments. The measure is used here to determine the dissimilarities between all 12,403 possible pairs of 158 diverse protein structures from the Brookhaven Protein Data Bank (PDB). Combined with minimal spanning trees and hier- archical clustering methods,this measure is used to define structural families. It is also useful for rapidly searching a dataset of protein structures for specific substructural motifs.By using an analogy to distributions of Euclid- ean distances, we find that protein families are not tightly knit entities. Keywords: protein family; relatedness; structural comparison; substructure searches Pioneering work over the past 20 years has shown that positions after superposition. RMS is a useful distance proteins fall into families of related structures (Levitt & metric for comparingstructures that arenearly identical: Chothia, 1976; Richardson, 1981; Richardson & Richard- for example, when refining or comparing structures ob- son, 1989; Chothia & Finkelstein, 1990). -
Generierung Und Charakterisierung Von Stromal Interaction Molecule 2 (STIM2)- Defizienten Mäusen
Julius-Maximilians Universität Würzburg Generierung und Charakterisierung von Stromal Interaction Molecule 2 (STIM2)- defizienten Mäusen Generation and Characterization of Stromal Interaction Molecule 2 (STIM2)-deficient Mice Doctoral thesis for a doctoral degree at the Graduate School of Life Sciences, Section Biomedicine submitted by Alejandro Berna Erro from Alicante, Spain Würzburg, 2009 Submitted on: …………………………………………………………..…….. Office stamp Members of the Promotionskomitee: Chairperson: Prof. Dr. Thomas Hünig Primary Supervisor: Prof. Dr. Bernhard Nieswandt Supervisor (Second): Prof. Dr. Thomas Dandekar Supervisor (Third): Prof. Dr. Ulrich Walter Date of Public Defence: …………………………………………….………… Date of Receipt of Certificates: ………………………………………………. PERSONAL DEDICATION The fact that I am here writing this thesis is the result of a great effort done by other people, long time ago, that has nothing to be with research. I would like to dedicate this work to them: To my most beloved people: My parents Rafael Berna and Juana Maria Erro. They emigrated to France and learned what is working hard. They worked in the mountains under the stars, in the forests and agriculture fields. They have glamorized many dirty floors and offices. They faced many barriers and many different works to seek for a prosper times. They helped and they have been helped many times by nice people. They transmitted me their life values. I would like to include my parents as the additional formal authors of this thesis, doctors honoris causa of the other life sciences. My sister Ana Cristina and her little family: Because is MY sister and a very nice person, what else I could say. Also to her daughters, my couple little nieces Claudia and Abril, that will become great persons in the future, for pride of my sister. -
The Cardiac-Specific N-Terminal Region of Troponin I Positions the Regulatory Domain of Troponin C
The cardiac-specific N-terminal region of troponin I positions the regulatory domain of troponin C Peter M. Hwanga,b,1, Fangze Caib, Sandra E. Pineda-Sanabriab, David C. Corsonb, and Brian D. Sykesb aDivision of General Internal Medicine, Department of Medicine, and bDepartment of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, Canada T6G 2H7 Edited by David Baker, University of Washington, Seattle, WA, and approved August 29, 2014 (received for review June 11, 2014) The cardiac isoform of troponin I (cTnI) has a unique 31-residue phosphorylation levels occur in a number of pathologic states, N-terminal region that binds cardiac troponin C (cTnC) to increase including heart failure with reduced ejection fraction, heart failure the calcium sensitivity of the sarcomere. The interaction can be with preserved ejection fraction, dilated cardiomyopathy, and hy- abolished by cTnI phosphorylation at Ser22 and Ser23, an impor- pertrophic cardiomyopathy (5, 8). Although dephosphorylation tant mechanism for regulating cardiac contractility. cTnC contains is likely a compensatory mechanism in many cases, it may be a two EF–hand domains (the N and C domain of cTnC, cNTnC and disease-driving dysregulation in others. cCTnC) connected by a flexible linker. Calcium binding to either Other regulatory mechanisms are strongly influenced by the domain favors an “open” conformation, exposing a large hydro- phosphorylation state of Ser22/23. The Frank–Starling law of the phobic surface that is stabilized by target binding, cTnI[148–158] heart, also known as length-dependent activation or stretch ac- for cNTnC and cTnI[39–60] for cCTnC. We used multinuclear multi- tivation, is more pronounced when Ser22/23 are phosphorylated – dimensional solution NMR spectroscopy to study cTnI[1 73] in (9, 10). -
CCN3 and Calcium Signaling Alain Lombet1, Nathalie Planque2, Anne-Marie Bleau2, Chang Long Li2 and Bernard Perbal*2
Cell Communication and Signaling BioMed Central Review Open Access CCN3 and calcium signaling Alain Lombet1, Nathalie Planque2, Anne-Marie Bleau2, Chang Long Li2 and Bernard Perbal*2 Address: 1CNRS UMR 8078, Hôpital Marie Lannelongue, 133, Avenue de la Résistance 92350 Le PLESSIS-ROBINSON, France and 2Laboratoire d'Oncologie Virale et Moléculaire, Tour 54, Case 7048, Université Paris 7-D.Diderot, 2 Place Jussieu 75005 PARIS, France Email: Alain Lombet - [email protected]; Nathalie Planque - [email protected]; Anne-Marie Bleau - [email protected]; Chang Long Li - [email protected]; Bernard Perbal* - [email protected] * Corresponding author Published: 15 August 2003 Received: 26 June 2003 Accepted: 15 August 2003 Cell Communication and Signaling 2003, 1:1 This article is available from: http://www.biosignaling.com/content/1/1/1 © 2003 Lombet et al; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Abstract The CCN family of genes consists presently of six members in human (CCN1-6) also known as Cyr61 (Cystein rich 61), CTGF (Connective Tissue Growth Factor), NOV (Nephroblastoma Overexpressed gene), WISP-1, 2 and 3 (Wnt-1 Induced Secreted Proteins). Results obtained over the past decade have indicated that CCN proteins are matricellular proteins, which are involved in the regulation of various cellular functions, such as proliferation, differentiation, survival, adhesion and migration. The CCN proteins have recently emerged as regulatory factors involved in both internal and external cell signaling. -
Agonist-Selected T Cell Development Requires Strong T Cell Receptor Signaling and Store-Operated Calcium Entry
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Immunity Article Agonist-Selected T Cell Development Requires Strong T Cell Receptor Signaling and Store-Operated Calcium Entry Masatsugu Oh-hora,1,2,3,4,* Noriko Komatsu,1,3 Mojgan Pishyareh,2 Stefan Feske,5 Shohei Hori,6 Masaru Taniguchi,7 Anjana Rao,2,9,* and Hiroshi Takayanagi1,3,8,10 1Department of Cell Signaling, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8549, Japan 2Department of Pathology, Immune Disease Institute and Program in Cellular and Molecular Medicine, Children’s Hospital, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA 3Global Center of Excellence (GCOE) Program, International Research Center for Molecular Science in Tooth and Bone Diseases, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8549, Japan 4Japan Science and Technology Agency (JST), Precursory Research for Embryonic Science and Technology (PRESTO) program, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8549, Japan 5Department of Pathology, New York University, School of Medicine, New York, NY 10016, USA 6Research Unit for Immune Homeostasis 7Laboratory for Immune Regulation RIKEN Research Center for Allergy and Immunology, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan 8Japan Science and Technology Agency (JST), Explorative Research for Advanced Technology (ERATO) program, Takayanagi Osteonetwork Project, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8549, Japan 9Present address: Division of Signaling and Gene Expression, La Jolla Institute for Allergy & Immunology, La Jolla, CA 92037, USA 10Present address: Department of Immunology, Graduate School of Medicine and Faculty of Medicine, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan *Correspondence: [email protected] (M.O.), [email protected] (A.R.) http://dx.doi.org/10.1016/j.immuni.2013.02.008 SUMMARY pMHC) interactions. -
Evidence for Rho Kinase Pathway
Oncogene (2001) 20, 2112 ± 2121 ã 2001 Nature Publishing Group All rights reserved 0950 ± 9232/01 $15.00 www.nature.com/onc Cytoskeletal organization in tropomyosin-mediated reversion of ras-transformation: Evidence for Rho kinase pathway Vanya Shah3, Shantaram Bharadwaj1,2, Kozo Kaibuchi4 and GL Prasad*,1,2 1Department of General Surgery, Wake Forest University School of Medicine, Winston-Salem, North Carolina, NC 27157, USA; 2Department of Cancer Biology, Wake Forest University School of Medicine, Winston-Salem, North Carolina, NC 27157, USA; 3Wistar Institute of Anatomy and Cell Biology, Philadelphia, Pennsylvania, USA; 4Nara Institute of Science and Technology Ikoma, Japan Tropomyosin (TM) family of cytoskeletal proteins is and tropomyosins (TMs) are suppressed to varying implicated in stabilizing actin micro®laments. Many TM degrees in many transformed cells (Ben-Ze'ev, 1997). isoforms, including tropomyosin-1 (TM1), are down- Furthermore, restoration of these proteins inhibits the regulated in transformed cells. Previously we demon- malignant phenotype of many dierent experimentally strated that TM1 is a suppressor of the malignant transformed cell lines, underscoring the pivotal role of transformation, and that TM1 reorganizes micro®la- cytoskeletal organization in maintaining a normal ments in the transformed cells. To investigate how TM1 phenotype (Ayscough, 1998; Janmey and Chaponnier, induces micro®lament organization in transformed cells, 1995). Our laboratory has been interested in under- we utilized ras-transformed NIH3T3 (DT) cells, and standing the role of cytoskeletal proteins, in particular those transduced to express TM1, and/or TM2. that of tropomyosins, in malignant transformation. Enhanced expression of TM1 alone, but not TM2, Tropomyosin (TM) family comprises of 5 ± 7 results in re-emergence of micro®laments; TM1, together dierent closely related isoforms, whose expression is with TM2 remarkably improves micro®lament architec- altered in many transformed cells (Lin et al., 1997; ture. -
Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane
cells Article Ca2+–Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane Md. Shahabe Uddin Talukder 1,2, Mst. Shaela Pervin 1,3, Md. Istiaq Obaidi Tanvir 1, Koushiro Fujimoto 1, Masahito Tanaka 1, Go Itoh 4 and Shigehiko Yumura 1,* 1 Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi 753-8511, Japan; [email protected] (M.S.U.T.); [email protected] (M.S.P.); [email protected] (M.I.O.T.); [email protected] (K.F.); [email protected] (M.T.) 2 Institute of Food and Radiation Biology, AERE, Bangladesh Atomic Energy Commission, Savar, Dhaka 3787, Bangladesh 3 Rajshahi Diabetic Association General Hospital, Luxmipur, Jhautala, Rajshahi 6000, Bangladesh 4 Department of Molecular Medicine and Biochemistry, Akita University Graduate School of Medicine, Akita 010-8543, Japan; [email protected] * Correspondence: [email protected]; Tel./Fax: +81-83-933-5717 Received: 2 April 2020; Accepted: 21 April 2020; Published: 23 April 2020 Abstract: Wound repair of cell membrane is a vital physiological phenomenon. We examined wound repair in Dictyostelium cells by using a laserporation, which we recently invented. We examined the influx of fluorescent dyes from the external medium and monitored the cytosolic Ca2+ after wounding. The influx of Ca2+ through the wound pore was essential for wound repair. Annexin and ESCRT components accumulated at the wound site upon wounding as previously described in animal cells, but these were not essential for wound repair in Dictyostelium cells. We discovered that calmodulin accumulated at the wound site upon wounding, which was essential for wound repair. -
Intracellular Ca Signaling and Store-Operated Ca Entry Are Required in Drosophila Neurons for Flight
Intracellular Ca2؉ signaling and store-operated Ca2؉ entry are required in Drosophila neurons for flight Gayatri Venkiteswaran and Gaiti Hasan1 National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bellary Road, Bangalore 560065, India Edited by Michael Rosbash, Brandeis University, Waltham, MA, and approved April 22, 2009 (received for review March 23, 2009) -Neuronal Ca2؉ signals can affect excitability and neural circuit for mation. Ca2؉ signals are modified by Ca2؉ flux from intracellular stores as well as the extracellular milieu. However, the contribution of intracellular Ca2؉ stores and their release to neuronal processes is poorly understood. Here, we show by neuron-specific siRNA deple- tion that activity of the recently identified store-operated channel encoded by dOrai and the endoplasmic reticulum Ca2؉ store sensor encoded by dSTIM are necessary for normal flight and associated patterns of rhythmic firing of the flight motoneurons of Drosophila melanogaster. Also, dOrai overexpression in flightless mutants for the Drosophila inositol 1,4,5-trisphosphate receptor (InsP3R) can par- tially compensate for their loss of flight. Ca2؉ measurements show that Orai gain-of-function contributes to the quanta of Ca2؉-release 2؉ through mutant InsP3Rs and elevates store-operated Ca entry in Drosophila neurons. Our data show that replenishment of intracel- .lular store Ca2؉ in neurons is required for Drosophila flight calcium homeostasis ͉ flight patterns ͉ inositol 1,4,5-trisphosphate receptor ͉ sarco-endoplasmic reticulum-associated Ca2ϩ ATPase ͉ STIM everal aspects of neuronal function are regulated by ionic Scalcium (Ca2ϩ). Specific attributes of a Ca2ϩ‘‘signature’’ such as amplitude, duration, and frequency of the signal can determine the morphology of a neural circuit by affecting the outcome of cell migration, the direction taken by a growth-cone, dendritic devel- opment, and synaptogenesis (1). -
Calmodulin: a Prototypical Calcium Sensor
TCB 08/00 paste-up 30/6/00 8:54 am Page 322 reviews Calmodulin: a the Ca21 signal. Hence, separate intracellular loci or organelles are potentially distinct compartments of prototypical localized Ca21 signalling2 (Fig. 1a). Therefore, Ca21 signals in the nucleus exert different effects from those generated in the cytoplasm or near the plasma calcium sensor membrane of the same cell3. Additionally, the modulation of the amplitude or frequency of Ca21 spikes (AM and FM, respectively) encodes important David Chin and Anthony R. Means signalling information4. This has recently been illustrated for cases in which an optimal frequency of intracellular Ca21 oscillations is important for the Calmodulin is the best studied and prototypical example of the expression of different genes5. 21 E–F-hand family of Ca -sensing proteins. Changes in Calcium-regulated proteins: calmodulin 21 intracellular Ca21 concentration regulate calmodulin in three How do Ca signals produce changes in cell func- tion? The information encoded in transient Ca21 distinct ways. First, at the cellular level, by directing its signals is deciphered by various intracellular Ca21- binding proteins that convert the signals into a wide subcellular distribution. Second, at the molecular level, by variety of biochemical changes. Some of these 21 promoting different modes of association with many target proteins, such as protein kinase C, bind to Ca and are directly regulated in a Ca21-dependent manner. proteins. Third, by directing a variety of conformational states in Other Ca21-binding proteins, however, are inter- mediaries that couple the Ca21 signals to biochemical calmodulin that result in target-specific activation. -
New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System
brain sciences Review New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System Krisztina Kelemen * and Tibor Szilágyi Department of Physiology, Doctoral School, Faculty of Medicine, George Emil Palade University of Medicine, Pharmacy, Science, and Technology of Targu Mures, 540142 Târgu Mures, , Romania; [email protected] * Correspondence: [email protected]; Tel.: +40-746-248064 Abstract: Although Ca2+ ion plays an essential role in cellular physiology, calcium-binding proteins (CaBPs) were long used for mainly as immunohistochemical markers of specific cell types in different regions of the central nervous system. They are a heterogeneous and wide-ranging group of proteins. Their function was studied intensively in the last two decades and a tremendous amount of informa- tion was gathered about them. Girard et al. compiled a comprehensive list of the gene-expression profiles of the entire EF-hand gene superfamily in the murine brain. We selected from this database those CaBPs which are related to information processing and/or neuronal signalling, have a Ca2+- buffer activity, Ca2+-sensor activity, modulator of Ca2+-channel activity, or a yet unknown function. In this way we created a gene function-based selection of the CaBPs. We cross-referenced these findings with publicly available, high-quality RNA-sequencing and in situ hybridization databases (Human Protein Atlas (HPA), Brain RNA-seq database and Allen Brain Atlas integrated into the HPA) and created gene expression heat maps of the regional and cell type-specific expression levels of the selected CaBPs. This represents a useful tool to predict and investigate different expression patterns and functions of the less-known CaBPs of the central nervous system. -
Cytoskeletal Remodeling in Cancer
biology Review Cytoskeletal Remodeling in Cancer Jaya Aseervatham Department of Ophthalmology, University of Texas Health Science Center at Houston, Houston, TX 77054, USA; [email protected]; Tel.: +146-9767-0166 Received: 15 October 2020; Accepted: 4 November 2020; Published: 7 November 2020 Simple Summary: Cell migration is an essential process from embryogenesis to cell death. This is tightly regulated by numerous proteins that help in proper functioning of the cell. In diseases like cancer, this process is deregulated and helps in the dissemination of tumor cells from the primary site to secondary sites initiating the process of metastasis. For metastasis to be efficient, cytoskeletal components like actin, myosin, and intermediate filaments and their associated proteins should co-ordinate in an orderly fashion leading to the formation of many cellular protrusions-like lamellipodia and filopodia and invadopodia. Knowledge of this process is the key to control metastasis of cancer cells that leads to death in 90% of the patients. The focus of this review is giving an overall understanding of these process, concentrating on the changes in protein association and regulation and how the tumor cells use it to their advantage. Since the expression of cytoskeletal proteins can be directly related to the degree of malignancy, knowledge about these proteins will provide powerful tools to improve both cancer prognosis and treatment. Abstract: Successful metastasis depends on cell invasion, migration, host immune escape, extravasation, and angiogenesis. The process of cell invasion and migration relies on the dynamic changes taking place in the cytoskeletal components; actin, tubulin and intermediate filaments. This is possible due to the plasticity of the cytoskeleton and coordinated action of all the three, is crucial for the process of metastasis from the primary site.