Habitat Associations of Trees and Shrubs in a 50-Ha Neotropical Forest
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Belizean Savanna Plant Collection (BSPC) Web Map Interface User Guide
Belizean Savanna Plant Collection (BSPC) Web Map Interface User Guide Neil Stuart Go Sato December 2011 Savanna Ecosystem Assessment in Belize Project University of Edinburgh http://www.eeo.ed.ac.uk/sea-belize/ Belizean Savanna Plant Collection Web Map Interface User Guide Table of Contents Table of Contents....................................................................................................................................... 1 1. Executive summary ............................................................................................................................... 2 2. Interface Overview ................................................................................................................................. 3 2.1. How to start BSPC Web Map Interface.............................................................................................. 3 2.2. Basic parts of the interface................................................................................................................ 3 3. Search Collections by Keywords on Taxonomic Records................................................................... 5 3.1. How to Input Search Keywords (Case of Scientific Names) ............................................................... 6 3.2. Search by combinations of Families, Genera and Species................................................................. 8 3.3. Search by Common Names of Species ............................................................................................. 9 3.4. Search -
Plant List by Genus
Valley of Peace Archaeology (VOPA) Lisa J. Lucero, PI Permit No. IA/H/2/1/10(05) Accession No. 10239 Spanish M (Med) /F (Food) / D English Common Common Maya Common (Deleterious) / O (Other use) Col. # Family Name Genus Species Name Name Name My notes Cleofo notes / C (ceremony) Sapindaceae/Basellac 114 eae /Anredera /vesicaria Red vine to kill fish with Red vine to kill fish with. O Sapindaceae/Fabacea 115 e /Inga /spp. bri-bri b'itz' Bears long fruit that is sweet F Ants bite and have long-lasting 26 Fabaceae Acacia spp. subin / zubin sub'in negative effects. D Bears green, fuzzy fruit. Leaves 221 Euphorbiaceae Acalypha spp. Small plant (acalypha) widest in the center Bears fruit, leaves have a prickle, 219 Arecaceae Acrocomia mexicana Moop (mop?) bears little fruit that you eat with F Adiantaceae Adiantum tenerum blackstick? Var Fruit is sweet like mango, red fruit inside, brown outside, fruit bears Rubiaceae/Sapotacea red or white fruit, unknown variety 212 e Alseis/Pouteria yucatanensis/sapota mame/ mamey/Mammee chäkäl-ja'as until you can see the fruit F 270 Amaranthaceae Amaranthus viridis/dubius Calaloo (amaranth Cut leaf, eat young with tortillas F Mammon (mamain?? 231 Annonaceae Annona glabra Mawon??) Fruit like marbles, green F 265 Annonaceae Annona muricata Soursop Little tree F 249 Annonaceae Annona retuculata Custard apple Custard apple, small F 64 Basellaceae Anredera vesicaria Red tie chäk-'ak' red vine Used to tie the house. O Used for building houses, like 15 Bignoniaceae Arrabidaea floribunda Pimienta Vine pimienta pimienta-'ak' bejuco pimienta tough string. -
A Taxonomic Comparison of Local Habitat Niches of Tropical Trees
Oecologia (2013) 173:1491–1498 DOI 10.1007/s00442-013-2709-5 COMMUNITY ECOLOGY - ORIGINAL RESEARCH A taxonomic comparison of local habitat niches of tropical trees Claire A. Baldeck · Steven W. Kembel · Kyle E. Harms · Joseph B. Yavitt · Robert John · Benjamin L. Turner · George B. Chuyong · David Kenfack · Duncan W. Thomas · Sumedha Madawala · Nimal Gunatilleke · Savitri Gunatilleke · Sarayudh Bunyavejchewin · Somboon Kiratiprayoon · Adzmi Yaacob · Mohd. N. Nur Supardi · Renato Valencia · Hugo Navarrete · Stuart J. Davies · Stephen P. Hubbell · James W. Dalling Received: 2 March 2012 / Accepted: 6 June 2013 / Published online: 13 July 2013 © Springer-Verlag Berlin Heidelberg 2013 Abstract The integration of ecology and evolution- forest dynamics plots. Niche overlap values, indicating the ary biology requires an understanding of the evolutionary similarity of two species’ distributions along soil or topo- lability in species’ ecological niches. For tropical trees, graphic axes, were calculated for all pairwise combinations specialization for particular soil resource and topographic of co-occurring tree species at each study site. Congeneric conditions is an important part of the habitat niche, influ- species pairs often showed greater niche overlap (i.e., more encing the distributions of individual species and overall similar niches) than non-congeneric pairs along both soil tree community structure at the local scale. However, little and topographic axes, though significant effects were found is known about how these habitat niches are related to the for only five sites based on Mantel tests. No evidence for evolutionary history of species. We assessed the relation- taxonomic effects was found at the family level. Our results ship between taxonomic rank and tree species’ soil resource indicate that local habitat niches of trees exhibit varying and topographic niches in eight large (24–50 ha) tropical degrees of phylogenetic signal at different sites, which may have important ramifications for the phylogenetic structure Communicated by Walt Carson. -
UCC Library and UCC Researchers Have Made This Item Openly Available. Please Let Us Know How This Has Helped You. Thanks! Downlo
UCC Library and UCC researchers have made this item openly available. Please let us know how this has helped you. Thanks! Title Myrteae phylogeny, calibration, biogeography and diversification patterns: increased understanding in the most species rich tribe of Myrtaceae Author(s) Vasconcelos, Thais N. C.; Proença, Carol E. B.; Ahmad, Berhaman; Aguilar, Daniel S.; Aguilar, Reinaldo; Amorim, Bruno S.; Campbell, Keron; Costa, Itayguara R.; De-Carvalho, Plauto S.; Faria, Jair E. Q.; Giaretta, Augusto; Kooij, Pepijn W.; Lima, Duane F.; Mazine, Fiorella F.; Peguero, Brigido; Prenner, Gerhard; Santos, Matheus F.; Soewarto, Julia; Wingler, Astrid; Lucas, Eve J. Publication date 2017-01-06 Original citation Vasconcelos, T. N. C., Proença, C. E. B., Ahmad, B., Aguilar, D. S., Aguilar, R., Amorim, B. S., Campbell, K., Costa, I. R., De-Carvalho, P. S., Faria, J. E. Q., Giaretta, A., Kooij, P. W., Lima, D. F., Mazine, F. F., Peguero, B., Prenner, G., Santos, M. F., Soewarto, J., Wingler, A. and Lucas, E. J. (2017) ‘Myrteae phylogeny, calibration, biogeography and diversification patterns: increased understanding in the most species rich tribe of Myrtaceae’, Molecular Phylogenetics and Evolution, 109, pp. 113-137. doi:10.1016/j.ympev.2017.01.002 Type of publication Article (peer-reviewed) Link to publisher's http://dx.doi.org/10.1016/j.ympev.2017.01.002 version Access to the full text of the published version may require a subscription. Rights © 2017, Elsevier Inc. All rights reserved. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/ Embargo information Access to this article is restricted until 12 months after publication by request of the publisher. -
Plant DNA Barcodes and a Community Phylogeny of a Tropical Forest Dynamics Plot in Panama
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama W. John Kressa,1, David L. Ericksona, F. Andrew Jonesb,c, Nathan G. Swensond, Rolando Perezb, Oris Sanjurb, and Eldredge Berminghamb aDepartment of Botany, MRC-166, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012; bSmithsonian Tropical Research Institute, P.O. Box 0843-03092, Balboa Anco´n, Republic of Panama´; cImperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, United Kingdom; and dCenter for Tropical Forest Science - Asia Program, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138 Communicated by Daniel H. Janzen, University of Pennsylvania, Philadelphia, PA, September 3, 2009 (received for review May 13, 2009) The assembly of DNA barcode libraries is particularly relevant pling: the conserved coding locus will easily align over all taxa within species-rich natural communities for which accurate species in a community sample to establish deep phylogenetic branches identifications will enable detailed ecological forensic studies. In whereas the hypervariable region of the DNA barcode will align addition, well-resolved molecular phylogenies derived from these more easily within nested subsets of closely related species and DNA barcode sequences have the potential to improve investiga- permit relationships to be inferred among the terminal branches tions of the mechanisms underlying community assembly and of the tree. functional trait evolution. To date, no studies have effectively In this respect a supermatrix design (8, 9) is ideal for using a applied DNA barcodes sensu strictu in this manner. In this report, mixture of coding genes and intergenic spacers for phylogenetic we demonstrate that a three-locus DNA barcode when applied to reconstruction across the broadest evolutionary distances, as in 296 species of woody trees, shrubs, and palms found within the the construction of community phylogenies (10). -
Sinopsis De La Familia Myrtaceae Y Clave Para La Identificación De Los Géneros Nativos E Introducidos En Colombia Carlos Parra-O
Rev. Acad. Colomb. Cienc. 38(148):261-77, julio-septiembre de 2014 Sinopsis de Myrtaceae en Colombia Ciencias naturales Sinopsis de la familia Myrtaceae y clave para la identificación de los géneros nativos e introducidos en Colombia Carlos Parra-O. Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Bogotá, Colombia Resumen Se presenta una sinopsis taxonómica de la familia Myrtaceae en Colombia que incluye los géneros nativos e introducidos en el país. Se analiza la diversidad de la familia en términos de la riqueza de especies, la distribución geográfica y altitudinal y la representatividad en las regiones naturales del país. Se describen los caracteres morfológicos que permiten diferenciar los géneros, así como los caracteres diagnósticos de cada uno, la distribución geográfica y una estimación preliminar del número de especies de estos. Se concluye con una clave para la identificación de los géneros de la familia en Colombia. Palabras clave: Colombia, Calyptranthes, Eugenia, flora de Colombia,Myrcia , Myrtaceae. Synopsis of the plant family Myrtaceae and key for the identification of the native and introduced genera in Colombia Abstract A taxonomic synopsis of Myrtaceae in Colombia is presented, including all native and introduced genera of the family growing in the country. The family diversity is analyzed in terms of species richness, geographic and altitudinal distribution, and representativeness in the country´s natural regions. Morphological characters that facilitate differentiation of the genera present in the country are described with information on diagnostic characters, geographic distribution, and a preliminary estimate of the number of species for each genus. A key to separate the genera in Colombia is also given. -
Spatial Patterns of Rare Species in Yosemite Forest Dynamics Plot As a Result of Seed Dispersal Andrea Blin a Thesis Submitted I
Spatial Patterns of Rare Species in Yosemite Forest Dynamics Plot as a Result of Seed Dispersal Andrea Blin A thesis submitted in partial fulfillment of the requirements for the degree of Bachelor’s of Science University of Washington 2011 Environmental Science and Resource Management School of Forest Resources University of Washington Abstract Spatial Patterns of Rare Species in Yosemite Forest Dynamics Plot as a Result of Seed Dispersal Andrea Blin Advisor: James A. Lutz, Research Associate School of Forest Resources An understanding of the mechanisms of seed dispersal at a site gives information on its present and potential spatial patterns and is often a reflection of alpha diversity. In this paper, I examine the potential mechanisms of seed dispersal at the Yosemite Forest Dynamics Plot (YFDP), located in Yosemite National Park. I compare the alpha diversity of YFDP (0.98) to that of the Barro Colorado Island Plot in Panama (3.96). I state that higher alpha diversity is related to the larger number of dispersers present in the area. I determine the rare species of the plot, as these have the most unique spatial patterns. A rare species is defined as having an importance value index less than one percent and a density less than 0.1. These include: Abies magnifica, Pseudotsuga menziesii, Pinus ponderosa, Rhamnus californica and Salix scouleriana. I analyze the spatial patterns and seed dispersal mechanisms of the rare species to determine correlation. Most of the species considered rare use abiotic vectors as their main mechanism of dispersal. Many animal species are present in YFDP, and are responsible for many of the spatial patterns seen, especially those of Pinus ponderosa, Abies magnifica and Rhamnus californica. -
University of Florida Thesis Or Dissertation Formatting
THE EVOLUTION OF LEAF PHYSICAL DEFENSE IN THE SHADE OF A NEOTROPICAL FOREST By JARED W. WESTBROOK A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2009 1 © 2009 Jared W. Westbrook 2 To all those who paved the way to “tree thinking” 3 ACKNOWLEDGMENTS I thank Dr. Kaoru Kitajima for guidance at all stages of this project. Dr. Gordon Burleigh provided technical assistance with phylogenetic analyses and helpful comments in the preparation of this thesis. David Brasfield collected leaves, Eric Oriel measured leaf fracture toughness, and Mirna Sameniego ground the leaf samples. Dr. Karen Bjorndal generously allowed us to use her ANKOM fiber analyzer, and Alex Boulos and Kimberly Williams assisted me with the fiber analysis. I owe a debt of gratitude to Drs. S. Joseph Wright and Helene Muller-Landau for hosting me during my stay in Panama. My parents and my partner, Maribeth Latvis have supported me through this entire process. This project has been made possible in part by a grant from the Frank Levinson Family Foundation, a supporting organization of the Silicon Valley Community Foundation. The National Science and MacArthur Foundations have supported the BCI 50-ha plot censuses. 4 TABLE OF CONTENTS page ACKNOWLEDGMENTS ...................................................................................................... 4 LIST OF TABLES ............................................................................................................... -
Plant DNA Barcodes and a Community Phylogeny of a Tropical Forest Dynamics Plot in Panama
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama W. John Kressa,1, David L. Ericksona, F. Andrew Jonesb,c, Nathan G. Swensond, Rolando Perezb, Oris Sanjurb, and Eldredge Berminghamb aDepartment of Botany, MRC-166, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012; bSmithsonian Tropical Research Institute, P.O. Box 0843-03092, Balboa Anco´ n, Republic of Panama´; cImperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, United Kingdom; and dCenter for Tropical Forest Science - Asia Program, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138 Communicated by Daniel H. Janzen, University of Pennsylvania, Philadelphia, PA, September 3, 2009 (received for review May 13, 2009) The assembly of DNA barcode libraries is particularly relevant pling: the conserved coding locus will easily align over all taxa within species-rich natural communities for which accurate species in a community sample to establish deep phylogenetic branches identifications will enable detailed ecological forensic studies. In whereas the hypervariable region of the DNA barcode will align addition, well-resolved molecular phylogenies derived from these more easily within nested subsets of closely related species and DNA barcode sequences have the potential to improve investiga- permit relationships to be inferred among the terminal branches tions of the mechanisms underlying community assembly and of the tree. functional trait evolution. To date, no studies have effectively In this respect a supermatrix design (8, 9) is ideal for using a applied DNA barcodes sensu strictu in this manner. In this report, mixture of coding genes and intergenic spacers for phylogenetic we demonstrate that a three-locus DNA barcode when applied to reconstruction across the broadest evolutionary distances, as in 296 species of woody trees, shrubs, and palms found within the the construction of community phylogenies (10). -
Yalbac Plant List
Valley of Peace Archaeology (VOPA) Lisa J. Lucero, PI Permit No. IA/H/2/1/10(05) Accession No. 10239 Spanish M (Med) /F (Food) / D Common Maya Common (Deleterious) / O (Other use) Col. # Family Name Genus Species English Common Name Name Name My notes Cleofo notes / C (ceremony) Not used for food, it has a wide distribution. 1 Apocynaceae Stemmadenia donnell-smithii Horseballs ton tzimin Used to make chewing gum F Good for food, found on top of mounds. 2 Moraceae Brosimim alicastrum Ramòn oox Wide distribution, edible. F 3 Passifloraceae Passiflora incarnata White Sasperilla sumb'ul? 4 Arecaceae Attalea cohune Cohune Palm tutz Used for thatch in Maya houses. O 5 Hardwood 6 Burseraceae Protium copal Copal pom Used for incense in Maya ceremonies. C NOTE: seeds are disc- shaped, ones we found on 7 Apocynaceae Aspidosperma cruentum/megalocarpon White Malady (Mylady) pemech-té the ground Used for lumber. O 8 Hardwood 9 Cecropiaceae Cecropia peltata Trumpet Tree xk'o'och No good for lumber, no good for food. 10 Arecaceae Chamaedorea tepejilote/elegans Pacaya säk ch'ib' Fruit for eating, palm, very widespread. F 11 Anacardiaceae Spondias radlkoferi Wild Plum (hog plum??) pook' Very good fruit. F All over Cara Blanca, have sap when cut 12 Moraceae Castilla elastica elastica Rubber Tree hule uule-che' that is very sticky. Fruit is pink 13 Arecaceae Cryosophila stauracantha Broom Tree (give and take) miis 14 Rubiaceae Simira salvadorensis Redwood k'olay? 15 Bignoniaceae Arrabidaea floribunda Pimienta Vine pimienta pimienta-'ak' bejuco pimienta Used for building houses, like tough string. -
Fractional Abundance and the Ecology of Community Structure
Fractional abundance and the ecology of community structure Colleen K. Kelly1, Michael G. Bowler2, Jeffrey B. Joy3 & John N. Williams5 1Department of Zoology, South Parks Road, Oxford OX1 3PS, UK; 2Department of Physics, Keble Road, Oxford OX1 3RH, UK; 3Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, Canada, V5A 1S6; 4Department of Land, Air, and Water Resources University of California, One Shields Avenue, Davis, CA 95616-8627 Fractional abundance redux The ecological principle of limiting similarity dictates that species similar in resource requirements will compete, with the superior eventually excluding the inferior competitor from the community1-4. The observation that nonetheless apparently similar species comprise a significant proportion of the diversity in any given community has led to suggestions that competition may not in fact be an important regulator of community structure and assembly5,6. Here we apply a recently introduced metric of species interaction, fractional (relative) abundance7,8, to tree species of the tropical wet forest of Barro Colorado Island, Panamá, the particular community that inspired the original model of non-niche or ‘neutral’ community dynamics9. We show a distribution of fractional abundances between pairs of most closely related congeneric tree species differing from that expected of competitive exclusion, but also inconsistent with expectations of simple similarity, whether such species interchangeability (a fundamental requirement of neutrality5,10) is inferred at the community or the pair level. Similar evidence from a strikingly different dry forest has been linked to the focused, stable competition of a temporal niche dynamic11-13. Taken together with these earlier findings, the results reported here establish a potentially widespread and important role for species interaction in the diversity and maintenance of natural communities that must be considered when inferring process from pattern. -
UNA ESPECIE NUEVA DE MYRCIANTHES (MYRTACEAE) DE COLOMBIA a New Species of Myrcianthes (Myrtaceae) from Colombia
BOTÁNICA-TAXONOMÍA http://www.icn.unal.edu.co/ Caldasia 34(2):277-282.Parra-O. 2012 UNA ESPECIE NUEVA DE MYRCIANTHES (MYRTACEAE) DE COLOMBIA A new species of Myrcianthes (Myrtaceae) from Colombia CARLOS PARRA-O. Instituto de Ciencias Naturales, Universidad Nacional de Colombia, Apartado 7495. Bogotá, D. C., Colombia. [email protected] RESUMEN Se describe e ilustra una especie nueva de Myrcianthes (Myrtaceae) para los Andes de Colombia. Se discuten y analizan las afinidades taxonómicas del nuevo taxón y su posición genérica dentro de las Myrtaceae neotropicales. Palabras clave. Flora de Colombia, Myrcianthes, Myrtaceae. ABSTRACT A new species of Myrcianthes (Myrtaceae) from the Colombian Andes is described and illustrated. Its taxonomic affinities and generic placement among Neotropical Myrtaceae are discussed and analyzed. Key words. Flora of Colombia, Myrcianthes, Myrtaceae. INTRODUCCIÓN reconoció una nueva especie que se describe e ilustra a continuación. Myrcianthes O. Berg (Myrtaceae) contiene entre 30-35 especies, distribuidas en el sur Myrcianthes sanctae-martae C. Parra-O., de la Florida (Estados Unidos de América), sp. nov. Tipo: COLOMBIA. Magdalena: el Caribe y México hasta Chile (Grifo 1992, Sierra Nevada de Santa Marta, “southeastern Landrum & Kawasaki 1997, Proença et al. slopes: Hoya del Río Donachui: Cancurúa, 2011). El género se caracteriza por poseer fields and forest”, 2400-2650 m, 10-11 oct hojas frecuentemente coriáceas, flores 1959 (bot, fl),J. Cuatrecasas & R. Romero- solitarias o en dicasios, cáliz abierto en el Castañeda 24769 (holotipo COL, isotipo botón floral con cuatro (raramente cinco) US). Figura 1. sépalos bien diferenciados, ovario usualmente con dos lóculos (a veces tres), 5-30 óvulos Myrcianthes borealis aemulans, sed follis por lóculo, frutos generalmente con una a concolorus, indumentis albidus, stylus saltem dos semillas (a veces hasta 4) y embrión con per distales duas tertias partes sparse vel dos cotiledones plano-convexos y separados modice pubescentibus, ovula 4-5 differt.