Selection Towards Different Adaptive Optima Drove the Early
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§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Two New Species of Australoheros (Teleostei: Cichlidae), with Notes on Diversity of the Genus and Biogeography of the Río De La Plata Basin
Zootaxa 2982: 1–26 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Two new species of Australoheros (Teleostei: Cichlidae), with notes on diversity of the genus and biogeography of the Río de la Plata basin OLDŘICH ŘÍČAN1, LUBOMÍR PIÁLEK1, ADRIANA ALMIRÓN2 & JORGE CASCIOTTA2 1Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská 31, 370 05, České Budějovice, Czech Republic. E-mail: [email protected], [email protected] 2División Zoología Vertebrados, Facultad de Ciencias Naturales y Museo, UNLP, Paseo del Bosque, 1900 La Plata, Argentina. E-mail: [email protected], [email protected] Abstract Two new species of Australoheros Říčan and Kullander are described. Australoheros ykeregua sp. nov. is described from the tributaries of the río Uruguay in Misiones province, Argentina. Australoheros angiru sp. nov. is described from the tributaries of the upper rio Uruguai and middle rio Iguaçu in Brazil. The two new species are not closely related, A. yke- regua is the sister species of A. forquilha Říčan and Kullander, while A. angiru is the sister species of A. minuano Říčan and Kullander. The diversity of the genus Australoheros is reviewed using morphological and molecular phylogenetic analyses. These analyses suggest that the described species diversity of the genus in the coastal drainages of SE Brazil is overestimated and that many described species are best undestood as representing cases of intraspecific variation. The dis- tribution patterns of Australoheros species in the Uruguay and Iguazú river drainages point to historical connections be- tween today isolated river drainages (the lower río Iguazú with the arroyo Urugua–í, and the middle rio Iguaçu with the upper rio Uruguai). -
Amazon Alive: a Decade of Discoveries 1999-2009
Amazon Alive! A decade of discovery 1999-2009 The Amazon is the planet’s largest rainforest and river basin. It supports countless thousands of species, as well as 30 million people. © Brent Stirton / Getty Images / WWF-UK © Brent Stirton / Getty Images The Amazon is the largest rainforest on Earth. It’s famed for its unrivalled biological diversity, with wildlife that includes jaguars, river dolphins, manatees, giant otters, capybaras, harpy eagles, anacondas and piranhas. The many unique habitats in this globally significant region conceal a wealth of hidden species, which scientists continue to discover at an incredible rate. Between 1999 and 2009, at least 1,200 new species of plants and vertebrates have been discovered in the Amazon biome (see page 6 for a map showing the extent of the region that this spans). The new species include 637 plants, 257 fish, 216 amphibians, 55 reptiles, 16 birds and 39 mammals. In addition, thousands of new invertebrate species have been uncovered. Owing to the sheer number of the latter, these are not covered in detail by this report. This report has tried to be comprehensive in its listing of new plants and vertebrates described from the Amazon biome in the last decade. But for the largest groups of life on Earth, such as invertebrates, such lists do not exist – so the number of new species presented here is no doubt an underestimate. Cover image: Ranitomeya benedicta, new poison frog species © Evan Twomey amazon alive! i a decade of discovery 1999-2009 1 Ahmed Djoghlaf, Executive Secretary, Foreword Convention on Biological Diversity The vital importance of the Amazon rainforest is very basic work on the natural history of the well known. -
TIAGO OCTAVIO BEGOT RUFFEIL Avaliação Dos Efeitos Da
PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA UNIVERSIDADE FEDERAL DO PARÁ MUSEU PARAENSE EMÍLIO GOELDI TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Belém, 2018 2 TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia. Área de concentração: Biodiversidade e conservação Linha de Pesquisa: Ecologia animal Orientador: Prof. Dr. Luciano Fogaça de Assis Montag Belém, 2018 3 FICHA CATALOGRÁFICA 4 FOLHA DE APROVAÇÃO TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia, sendo a COMISSÃO JULGADORA composta pelos seguintes membros: Prof. Dr. Luciano Fogaça de Assis Montag Universidade Federal do Pará (Presidente) Prof. Dra. Cecilia Gontijo Leal Museu Paraense Emílio Goeldi Prof. Dr. David Hoeinghaus University of North Texas Profa. Dra. Erica Maria Pellegrini Caramaschi Universidade Federal do Rio de Janeiro Prof. Dr. Marcos Pérsio Dantas Santos Universidade Federal do Pará Prof. Dr. Paulo dos Santos Pompeu Universidade Federal de Lavras Prof. Dr. Raphael Ligeiro Barroso Santos Universidade Federal do Pará Prof. -
A New Colorful Species of Geophagus (Teleostei: Cichlidae), Endemic to the Rio Aripuanã in the Amazon Basin of Brazil
Neotropical Ichthyology, 12(4): 737-746, 2014 Copyright © 2014 Sociedade Brasileira de Ictiologia DOI: 10.1590/1982-0224-20140038 A new colorful species of Geophagus (Teleostei: Cichlidae), endemic to the rio Aripuanã in the Amazon basin of Brazil Gabriel C. Deprá1, Sven O. Kullander2, Carla S. Pavanelli1,3 and Weferson J. da Graça4 Geophagus mirabilis, new species, is endemic to the rio Aripuanã drainage upstream from Dardanelos/Andorinhas falls. The new species is distinguished from all other species of the genus by the presence of one to five large black spots arranged longitudinally along the middle of the flank, in addition to the black midlateral spot that is characteristic of species in the genus and by a pattern of iridescent spots and lines on the head in living specimens. It is further distinguished from all congeneric species, except G. camopiensis and G. crocatus, by the presence of seven (vs. eight or more) scale rows in the circumpeduncular series below the lateral line (7 in G. crocatus; 7-9 in G. camopiensis). Including the new species, five cichlids and 11 fish species in total are known only from the upper rio Aripuanã, and 15 fish species in total are known only from the rio Aripuanã drainage. Geophagus mirabilis, espécie nova, é endêmica da drenagem do rio Aripuanã, a montante das quedas de Dardanelos/ Andorinhas. A espécie nova se distingue de todas as outras espécies do gênero pela presença de uma a cinco manchas pretas grandes distribuídas longitudinalmente ao longo do meio do flanco, em adição à mancha preta no meio do flanco característica das espécies do gênero, e por um padrão de pontos e linhas iridescentes sobre a cabeça em espécimes vivos. -
Multilocus Phylogeny of Crenicichla (Teleostei: Cichlidae), with Biogeography of the C
Molecular Phylogenetics and Evolution 62 (2012) 46–61 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus phylogeny of Crenicichla (Teleostei: Cichlidae), with biogeography of the C. lacustris group: Species flocks as a model for sympatric speciation in rivers ⇑ Lubomír Piálek a, , Oldrˇich Rˇícˇan a, Jorge Casciotta b, Adriana Almirón b, Jan Zrzavy´ a a University of South Bohemia, Faculty of Science, Department of Zoology, Branišovská 31, 370 05 Cˇeské Budeˇjovice, Czech Republic b Museo de La Plata, División Zoología Vertebrados, UNLP, Paseo del Bosque, 1900 La Plata, Argentina article info abstract Article history: First multilocus analysis of the largest Neotropical cichlid genus Crenicichla combining mitochondrial Received 19 April 2011 (cytb, ND2, 16S) and nuclear (S7 intron 1) genes and comprising 602 sequences of 169 specimens yields Revised 1 September 2011 a robust phylogenetic hypothesis. The best marker in the combined analysis is the ND2 gene which con- Accepted 9 September 2011 tributes throughout the whole range of hierarchical levels in the tree and shows weak effects of satura- Available online 25 September 2011 tion at the 3rd codon position. The 16S locus exerts almost no influence on the inferred phylogeny. The nuclear S7 intron 1 resolves mainly deeper nodes. Crenicichla is split into two main clades: (1) Teleocichla, Keywords: the Crenicichla wallacii group, and the Crenicichla lugubris–Crenicichla saxatilis groups (‘‘the TWLuS Hybridization clade’’); (2) the Crenicichla reticulata group and the Crenicichla lacustris group–Crenicichla macrophthalma Iguazú Paraná (‘‘the RMLa clade’’). Our study confirms the monophyly of the C. lacustris species group with very high South America support. -
Apistogramma Ortegai (Teleostei: Cichlidae), a New Species of Cichlid Fish from the Ampyiacu River in the Peruvian Amazon Basin
Zootaxa 3869 (4): 409–419 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3869.4.5 http://zoobank.org/urn:lsid:zoobank.org:pub:CB38DF91-EC70-4B17-9B9A-18C949431C1D Apistogramma ortegai (Teleostei: Cichlidae), a new species of cichlid fish from the Ampyiacu River in the Peruvian Amazon basin RICARDO BRITZKE1, CLAUDIO OLIVEIRA1 & SVEN O. KULLANDER2 1Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Rubião Jr. s/n. CEP 18618-970. Botucatu, SP, Brazil. E-mail: [email protected] 2Department of Zoology, Swedish Museum of Natural History, PO Box 50007, SE-104 05 Stockholm, Sweden Abstract Apistogramma ortegai, new species, is described from small streams tributaries of the Ampiyacu River near Pebas, in east- ern Peru. It belongs to the Apistogramma regani species group and is distinguished from all other species of Apistogramma by the combination of contiguous caudal spot to bar 7, presence of abdominal stripes, short dorsal-fin lappets in both sexes, absence of vertical stripes on the caudal fin, and reduced number of predorsal and prepelvic scales. Key words: Geophaginae, Geophagini, Amazonia, Freshwater, Morphology, Taxonomy Resumen Apistogramma ortegai, nueva especie, es descrita desde pequeños tributario del rio Ampiyacu cerca de Pebas, en el este del Perú. Pertenece al grupo de especies de A. regani y es distinguido de todas las otras especies de Apistograma por la combinación de la barra 7 conectada con una mancha en la aleta caudal, presencia de líneas abdominales, membranas de la aleta dorsal cortas en ambos sexos, ausencia de líneas verticales en la aleta caudal, y reducido número de escamas pre- dorsales y prepélvicas. -
Vulnerability of the Biota in Riverine and Seasonally Flooded Habitats to Damming of Amazonian Rivers
Received: 11 December 2019 Revised: 8 April 2020 Accepted: 5 June 2020 DOI: 10.1002/aqc.3424 SPECIAL ISSUE ARTICLE Vulnerability of the biota in riverine and seasonally flooded habitats to damming of Amazonian rivers Edgardo M. Latrubesse1 | Fernando M. d'Horta2 | Camila C. Ribas2 | Florian Wittmann3 | Jansen Zuanon2 | Edward Park4 | Thomas Dunne5 | Eugenio Y. Arima6 | Paul A. Baker7 1Asian School of the Environment and Earth Observatory of Singapore (EOS), Nanyang Abstract Technological University (NTU), Singapore 1. The extent and intensity of impacts of multiple new dams in the Amazon basin on 2 National Institute of Amazonian Research specific biological groups are potentially large, but still uncertain and need to be (INPA), Manaus, Brazil 3Institute of Floodplain Ecology, Karlsruhe better understood. Institute of Technology, Rastatt, Germany 2. It is known that river disruption and regulation by dams may affect sediment sup- 4 National Institute of Education (NIE), plies, river channel migration, floodplain dynamics, and, as a major adverse conse- Nanyang Technological University, Singapore quence, are likely to decrease or even suppress ecological connectivity among 5Bren School of Environmental Science and Management, University of California (UCSB), populations of aquatic organisms and organisms dependent upon seasonally Santa Barbara, California, USA flooded environments. 6Department of Geography and the Environment, University of Texas at Austin, 3. This article complements our previous results by assessing the relationships Austin, Texas, USA between dams, our Dam Environmental Vulnerability Index (DEVI), and the biotic 7 Nicholas School of the Environment, Duke environments threatened by the effects of dams. Because of the cartographic rep- University, Durham, North Carolina, USA resentation of DEVI, it is a useful tool to compare the potential hydrophysical Correspondence impacts of proposed dams in the Amazon basin with the spatial distribution of Edgardo Latrubesse, Asian School of the Environment and Earth Observatory of biological diversity. -
Apistogramma Kullanderi, New Species (Teleostei: Cichlidae)
243 Ichthyol. Explor. Freshwaters, Vol. 25, No. 3, pp. 243-258, 8 figs., 1 tab., December 2014 © 2014 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 A titan among dwarfs: Apistogramma kullanderi, new species (Teleostei: Cichlidae) Henrique R. Varella* and Mark H. Sabaj Pérez** Apistogramma kullanderi, new species, is described from the upper rio Curuá (Iriri-Xingu drainage) on Serra do Cachimbo, Pará, Brazil, and diagnosed by its maximum size of 79.7 mm SL (vs. 65.3 mm SL among wild-caught congeners); mature females having the unique combination of intense dark pigmentation continuous along base of dorsal fin and on ventral surfaces from gular region to anal-fin base; and mature males having a coarse, ir- regular pattern of dark spots and vermiculations on cheek and opercular series, and sides with 10-12 dark stripes, each stripe occupying proximal limits of adjacent scale rows and separated by paler region central to each scale. Apistogramma kullanderi is tentatively allocated to the A. regani lineage, although some characteristics (e. g., large body size) are more consistent with members the A. steindachneri lineage. Apistogramma kullanderi is endemic to an upland watershed isolated by large waterfalls and depauperate of cichlid diversity. Under those conditions, we speculate that ecological opportunities, reduced competition and sexual selection contributed to the evolution of large body size in A. kullanderi. Introduction and established many of the standards used to accurately compare and describe its morphologi- Apistogramma Regan 1913 is composed of 84 cal diversity. Kullander (1980) recognized 36 valid valid species including the one described herein species in Apistogramma, 12 of which he newly (but not Apistogrammoides pucallpaensis Meinken, described. -
Guianacara Dacrya, a New Species from the Rio Branco and Essequibo River Drainages of the Guiana Shield (Perciformes: Cichlidae)
Neotropical Ichthyology, 9(1):87-96, 2011 Copyright © 2011 Sociedade Brasileira de Ictiologia Guianacara dacrya, a new species from the rio Branco and Essequibo River drainages of the Guiana Shield (Perciformes: Cichlidae) Jessica H. Arbour1 and Hernán López-Fernández1,2 A new species of Guianacara is described from tributaries of the Essequibo River and the rio Branco in Guyana and northern Brazil. Guianacara dacrya, new species, can be diagnosed from all congeners by the possession of a unique infraorbital stripe and by the shape of the lateral margin of the lower pharyngeal jaw tooth plate. Guianacara dacrya can be further distinguished from G. geayi, G. owroewefi, G. sphenozona and G. stergiosi by the possession of a thin midlateral bar, from G. cuyunii by the possession of dusky branchiostegal membranes and from G. oelemariensis by the possession of two supraneurals. This species differs from most congeners by the presence of white spots on the spiny portion of the dorsal fin, the placement of the midlateral spot, the presence of filaments on the dorsal, anal and in rare cases the caudal-fin and from at least the Venezuelan species by several morphometric variables. Guianacara dacrya is known from the Essequibo, Takutu and Ireng River basins of Guyana and possibly from the rio Uraricoera in the rio Branco basin in Brazil. A key to the species is provided. Describimos una especie nueva de Guianacara de las cuencas del río Essequibo y el río Branco en Guyana y el norte de Brasil. Guianacara dacrya, especie nueva, puede distinguirse de todos sus congéneres por la presencia de una barra infraorbital modificada y por la forma única del margen lateral de la placa dentada de la mandíbula faríngea inferior. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their