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Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Larval Development of Shallow Water Barnacles of the Carolinas (Cirripedia
421 NOAA Technical Report Circular 421 OF <•*>" *o, Larval Development of / Shallow Water Barnacles of the Carolinas (Cirripedia: Sr V/ *TES O* Thoracica) With Keys to Naupliar Stages William H. Lang February 1979 U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service NOAA TECHNICAL REPORTS National Marine Fisheries Service, Circulars The major responsibilities of the National Marine Fisheries Service (NMFS) are to monitor and assess the abundance and geographic distribution of fishery resources, to understand and predict fluctuations in the quantity and distribution of these resources, and to establish levels for optimum use of the resources. NMFS is also charged with the development and implementation of policies for managing national fishing grounds, development and enforcement of domestic fisheries regulations, surveillance of foreign fishing off United States coastal waters, and the development and enforcement of international fishery agreements and policies. NMFS also assists the fishing industry through marketing service and economic analysis programs, and mortgage insurance and vessel construction subsidies. It collects, analyzes, and publishes statistics on various phases of the industry. The NOAA Technical Report NMFS Circular series continues a series that has been in existence since 1941. The Circulars are technical publications of general interest intended to aid conservation and management. Publications that review in considerable detail and at a high technical level certain broad areas of research appear in this series. Technical papers originating in economics studies and from management in- vestigations appear in the Circular series. NOAA Technical Report NMFS Circulars are available free in limited numbers to governmental agencies, both Federal and State. -
Balanus Glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha Acorn barnacle Family: Balanoidea, Balanidae, Balaninae Description (the plate overlapping plate edges) and radii Size: Up to 3 cm in diameter, but usually (the plate edge marked off from the parietes less than 1.5 cm (Ricketts and Calvin 1971; by a definite change in direction of growth Kozloff 1993). lines) (Fig. 3b) (Newman 2007). The plates Color: Shell usually white, often irregular themselves include the carina, the carinola- and color varies with state of erosion. Cirri teral plates and the compound rostrum (Fig. are black and white (see Plate 11, Kozloff 3). 1993). Opercular Valves: Valves consist of General Morphology: Members of the Cirri- two pairs of movable plates inside the wall, pedia, or barnacles, can be recognized by which close the aperture: the tergum and the their feathery thoracic limbs (called cirri) that scutum (Figs. 3a, 4, 5). are used for feeding. There are six pairs of Scuta: The scuta have pits on cirri in B. glandula (Fig. 1). Sessile barna- either side of a short adductor ridge (Fig. 5), cles are surrounded by a shell that is com- fine growth ridges, and a prominent articular posed of a flat basis attached to the sub- ridge. stratum, a wall formed by several articulated Terga: The terga are the upper, plates (six in Balanus species, Fig. 3) and smaller plate pair and each tergum has a movable opercular valves including terga short spur at its base (Fig. 4), deep crests for and scuta (Newman 2007) (Figs. -
Hull Fouling Is a Risk Factor for Intercontinental Species Exchange in Aquatic Ecosystems
Aquatic Invasions (2007) Volume 2, Issue 2: 121-131 Open Access doi: http://dx.doi.org/10.3391/ai.2007.2.2.7 © 2007 The Author(s). Journal compilation © 2007 REABIC Research Article Hull fouling is a risk factor for intercontinental species exchange in aquatic ecosystems John M. Drake1,2* and David M. Lodge1,2 1Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556 USA 2Environmental National Center for Ecological Analysis and Synthesis, 735 State Street, Suite 300, Santa Barbara, CA 93101 USA *Corresponding author Current address: Institute of Ecology, University of Georgia, Athens, GA 30602 USA E-mail: [email protected] (JMD) Received: 13 March 2007 / Accepted: 25 May 2007 Abstract Anthropogenic biological invasions are a leading threat to aquatic biodiversity in marine, estuarine, and freshwater ecosystems worldwide. Ballast water discharged from transoceanic ships is commonly believed to be the dominant pathway for species introduction and is therefore increasingly subject to domestic and international regulation. However, compared to species introductions from ballast, translocation by biofouling of ships’ exposed surfaces has been poorly quantified. We report translocation of species by a transoceanic bulk carrier intercepted in the North American Great Lakes in fall 2001. We collected 944 individuals of at least 74 distinct freshwater and marine taxa. Eight of 29 taxa identified to species have never been observed in the Great Lakes. Employing five different statistical techniques, we estimated that the biofouling community of this ship comprised from 100 to 200 species. These findings adjust upward by an order of magnitude the number of species collected from a single ship. -
Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Montagu's stellate barnacle (Chthamalus montagui) MarLIN – Marine Life Information Network Biology and Sensitivity Key Information Review Karen Riley 2002-01-28 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/species/detail/1322]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Riley, K. 2002. Chthamalus montagui Montagu's stellate barnacle. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinsp.1322.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Date: 2002-01-28 Montagu's stellate barnacle (Chthamalus montagui) - Marine Life Information Network See online review for distribution map Close up of Chthamalus montagui from High Water of Spring Tide level seen dry. -
Title a REVISION of the DEEP-SEA BARNACLES PACHYLASMA AND
A REVISION OF THE DEEP-SEA BARNACLES PACHYLASMA AND HEXELASMA FROM JAPAN, WITH Title A PROPOSAL OF NEW CLASSIFICATION OF THE CHTHAMALIDAE (CIRRIPEDIA, THORACICA) Author(s) Utinomi, Huzio PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1968), 16(1): 21-39 Issue Date 1968-06-29 URL http://hdl.handle.net/2433/175492 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University A REVISION OF THE DEEP-SEA BARNACLES P ACHYLASMA AND HEXELASMA FROM JAPAN, WITH A PROPOSAL OF NEW CLASSIFICATION OF THE CHTHAMALIDAE (CIRRIPEDIA, THORACICA)') Huz10 UTINOMI Seto Marine Biological Laboratory, Sirahama With 7 Text-figures SYNOPSIS The deep-sea barnacles Pachylasma and Hexelasma are little known and a few species have been sporadically recorded from isolated localities of all oceans. Of the genus Pachylasma, only two species P. crinoidophilum PrLSBRY and P.japonicum HrRo have been known from Japan. A third species P. scutistriatum BROCH is newly added to the Japanese fauna. The other known species, P. ecaudatum HrRo formerly referred to Pachylasma, is now transferred to the genus Hexelasma, of which two species H. velutinum HoEK and H. callistoderma PILSBRY only have been so far known from Japan. An attempt to subdivide the family Chthamalidae into three subfamilies (Catophragminae, Chthamalinae and Pachylasminae) is newly presented. Syste~natic Account of the Japanese Species (Revised) Genus Pachylasma DARWIN, 1854 Diagnosis. Chthamalidae having a wall of eight compartments, in which the rostrum and rostrolaterals are united by inconspicuous, linear sutures, or are wholly con crescent in the adult stage, the wall thus becoming virtually six-plated. Radii wanting or very narrow and not well differentiated from the parietes. -
Euraphia Eastropacensis (Cirripedia, Chthamaloidea)
Pacific Science (1987), vol. 41, nos. 1-4 © 1988 by the University of HawaiiPress. All rights reserved Euraphia eastropacensis (Cirripedia, Chthamaloidea), a New Species ofBarnacle from the Tropical Eastern Pacific: Morphological and Electrophoretic Comparisons with Euraphia rhizophorae (deOliveira) from the Tropical Western Atlantic and Molecular Evolutionary Implications. 1 JORGE E. LAGUNA 2 ABSTRACT: Euraphia eastropacensis sp. nov., of the tropical Eastern Pacific, is distinguished from its tropical Western Atlantic congener, E. rhizophorae , by morphological and electrophoretic evidence. Because of the apparent recent radiation of high intertidal chthamaloids and the recent closure of the Isthmus ofPanama, one would expect that these two species ofEuraphia were geminates. However, utilizing electrophoretic data, a large genetic distance value (0.95) was found, and this creates difficulties when explaining speciation between the two in terms of the molecular clock. A molecular evolutionary interpretation of the data suggests that the two species may have speciated before the closure of the Isthmus of Panama, probably as early as the Upper Miocene. THE MARINE COMMUNITIES common to the ness, and to explain the evolutionary implica proto-Caribbean and the tropical Eastern tions raised with respect to the molecular Pacific were separated by the tectonic closure clock hypothesis. of the Isthmus of Panama 3 million years ago . Morphologically similar remnants ofthis separation were presently found on both sides MATERIALS AND METHODS ofthe Isthmus ofPanama. Among the barna cles we have members of the genus Conopea, Specimens of Euraphia were collected on M egabalanus , and Euraphia (Laguna 1985). mangrove roots from the high intertidal on The population representing Euraphia eas both coasts of Panama, from July to August tropacensis sp. -
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group THE MARINE BIODIVERSITY AND FISHERIES CATCHES OF THE PITCAIRN ISLAND GROUP M.L.D. Palomares, D. Chaitanya, S. Harper, D. Zeller and D. Pauly A report prepared for the Global Ocean Legacy project of the Pew Environment Group by the Sea Around Us Project Fisheries Centre The University of British Columbia 2202 Main Mall Vancouver, BC, Canada, V6T 1Z4 TABLE OF CONTENTS FOREWORD ................................................................................................................................................. 2 Daniel Pauly RECONSTRUCTION OF TOTAL MARINE FISHERIES CATCHES FOR THE PITCAIRN ISLANDS (1950-2009) ...................................................................................... 3 Devraj Chaitanya, Sarah Harper and Dirk Zeller DOCUMENTING THE MARINE BIODIVERSITY OF THE PITCAIRN ISLANDS THROUGH FISHBASE AND SEALIFEBASE ..................................................................................... 10 Maria Lourdes D. Palomares, Patricia M. Sorongon, Marianne Pan, Jennifer C. Espedido, Lealde U. Pacres, Arlene Chon and Ace Amarga APPENDICES ............................................................................................................................................... 23 APPENDIX 1: FAO AND RECONSTRUCTED CATCH DATA ......................................................................................... 23 APPENDIX 2: TOTAL RECONSTRUCTED CATCH BY MAJOR TAXA ............................................................................ -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Connecticut Aquatic Nuisance Species Management Plan
CONNECTICUT AQUATIC NUISANCE SPECIES MANAGEMENT PLAN Connecticut Aquatic Nuisance Species Working Group TABLE OF CONTENTS Table of Contents 3 Acknowledgements 5 Executive Summary 6 1. INTRODUCTION 10 1.1. Scope of the ANS Problem in Connecticut 10 1.2. Relationship with other ANS Plans 10 1.3. The Development of the CT ANS Plan (Process and Participants) 11 1.3.1. The CT ANS Sub-Committees 11 1.3.2. Scientific Review Process 12 1.3.3. Public Review Process 12 1.3.4. Agency Review Process 12 2. PROBLEM DEFINITION AND RANKING 13 2.1. History and Biogeography of ANS in CT 13 2.2. Current and Potential Impacts of ANS in CT 15 2.2.1. Economic Impacts 16 2.2.2. Biodiversity and Ecosystem Impacts 19 2.3. Priority Aquatic Nuisance Species 19 2.3.1. Established ANS Priority Species or Species Groups 21 2.3.2. Potentially Threatening ANS Priority Species or Species Groups 23 2.4. Priority Vectors 23 2.5. Priorities for Action 23 3. EXISTING AUTHORITIES AND PROGRAMS 30 3.1. International Authorities and Programs 30 3.2. Federal Authorities and Programs 31 3.3. Regional Authorities and Programs 37 3.4. State Authorities and Programs 39 3.5. Local Authorities and Programs 45 4. GOALS 47 3 5. OBJECTIVES, STRATEGIES, AND ACTIONS 48 6. IMPLEMENTATION TABLE 72 7. PROGRAM MONITORING AND EVALUATION 80 Glossary* 81 Appendix A. Listings of Known Non-Native ANS and Potential ANS in Connecticut 83 Appendix B. Descriptions of Species Identified as ANS or Potential ANS 93 Appendix C. -
Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin
California State University, Monterey Bay Digital Commons @ CSUMB Capstone Projects and Master's Theses Capstone Projects and Master's Theses Summer 2020 Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin Kenji Jordi Soto California State University, Monterey Bay Follow this and additional works at: https://digitalcommons.csumb.edu/caps_thes_all Recommended Citation Soto, Kenji Jordi, "Hydrothermal Vent Periphery Invertebrate Community Habitat Preferences of the Lau Basin" (2020). Capstone Projects and Master's Theses. 892. https://digitalcommons.csumb.edu/caps_thes_all/892 This Master's Thesis (Open Access) is brought to you for free and open access by the Capstone Projects and Master's Theses at Digital Commons @ CSUMB. It has been accepted for inclusion in Capstone Projects and Master's Theses by an authorized administrator of Digital Commons @ CSUMB. For more information, please contact [email protected]. HYDROTEHRMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _______________ A Thesis Presented to the Faculty of Moss Landing Marine Laboratories California State University Monterey Bay _______________ In Partial Fulfillment of the Requirements for the Degree Master of Science in Marine Science _______________ by Kenji Jordi Soto Spring 2020 CALIFORNIA STATE UNIVERSITY MONTEREY BAY The Undersigned Faculty Committee Approves the Thesis of Kenji Jordi Soto: HYDROTHERMAL VENT PERIPHERY INVERTEBRATE COMMUNITY HABITAT PREFERENCES OF THE LAU BASIN _____________________________________________ -
Cladistic Analysis of the Cirripedia Thoracica
UvA-DARE (Digital Academic Repository) Cladistic analysis of the Cirripedia Thoracica Schram, F.R.; Glenner, H.; Hoeg, J.T.; Hensen, P.G. Publication date 1995 Published in Zoölogical Journal of the Linnean Society Link to publication Citation for published version (APA): Schram, F. R., Glenner, H., Hoeg, J. T., & Hensen, P. G. (1995). Cladistic analysis of the Cirripedia Thoracica. Zoölogical Journal of the Linnean Society, 114, 365-404. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:28 Sep 2021 Zoological Journal of the Linnean Society (1995), 114: 365–404. With 12 figures Cladistic analysis of the Cirripedia Thoracica HENRIK GLENNER,1 MARK J. GRYGIER,2 JENS T. HOšEG,1* PETER G. JENSEN1 AND FREDERICK R.