Changes in Belowground Biodiversity During Ecosystem Development
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Soil As a Huge Laboratory for Microorganisms
Research Article Agri Res & Tech: Open Access J Volume 22 Issue 4 - September 2019 Copyright © All rights are reserved by Mishra BB DOI: 10.19080/ARTOAJ.2019.22.556205 Soil as a Huge Laboratory for Microorganisms Sachidanand B1, Mitra NG1, Vinod Kumar1, Richa Roy2 and Mishra BB3* 1Department of Soil Science and Agricultural Chemistry, Jawaharlal Nehru Krishi Vishwa Vidyalaya, India 2Department of Biotechnology, TNB College, India 3Haramaya University, Ethiopia Submission: June 24, 2019; Published: September 17, 2019 *Corresponding author: Mishra BB, Haramaya University, Ethiopia Abstract Biodiversity consisting of living organisms both plants and animals, constitute an important component of soil. Soil organisms are important elements for preserved ecosystem biodiversity and services thus assess functional and structural biodiversity in arable soils is interest. One of the main threats to soil biodiversity occurred by soil environmental impacts and agricultural management. This review focuses on interactions relating how soil ecology (soil physical, chemical and biological properties) and soil management regime affect the microbial diversity in soil. We propose that the fact that in some situations the soil is the key factor determining soil microbial diversity is related to the complexity of the microbial interactions in soil, including interactions between microorganisms (MOs) and soil. A conceptual framework, based on the relative strengths of the shaping forces exerted by soil versus the ecological behavior of MOs, is proposed. Plant-bacterial interactions in the rhizosphere are the determinants of plant health and soil fertility. Symbiotic nitrogen (N2)-fixing bacteria include the cyanobacteria of the genera Rhizobium, Free-livingBradyrhizobium, soil bacteria Azorhizobium, play a vital Allorhizobium, role in plant Sinorhizobium growth, usually and referred Mesorhizobium. -
Soil Acidification
viti-notes [grapevine nutrition] Soil acidifi cation Viti-note Summary: Characteristics of acidic soils • Soil pH Calcium and magnesium are displaced • Soil acidifi cation in by aluminium (Al3+) and hydrogen (H+) vineyards and are leached out of the soil. Acidic soils below pH 6 often have reduced • Characteristics of acidic populations of micro-organisms. As soils microbial activity decreases, nitrogen • Acidifying fertilisers availability to plants also decreases. • Effect of soil pH on Sulfur availability to plants also depends rate of breakdown of on microbial activity so in acidic soils, ammonium to nitrate where microbial activity is reduced, Figure 1. Effect of soil pH on availability of minerals sulfur can become unavailable. (Sulfur • Management of defi ciency is not usually a problem for acidifi cation Soil pH vineyards as adequate sulfur can usually • Correction of soil pH All plants and soil micro-organisms have be accessed from sulfur applied as foliar with lime preferences for soil within certain pH fungicides). ranges, usually neutral to moderately • Strategies for mature • Phosphorus availability is reduced at acid or alkaline. Soil pH most suitable vines low pH because it forms insoluble for grapevines is between 5.5 and 8.5. phosphate compounds with In this range, roots can acquire nutrients aluminium, iron and manganese. from the soil and grow to their potential. As soils become more acid or alkaline, • Molybdenum is seldom defi cient in grapevines become less productive. It is neutral to alkaline soils but can form important to understand the impacts of insoluble compounds in acid soils. soil pH in managing grapevine nutrition, • In strongly acidic soil (pH <5), because the mobility and availability of aluminium may become freely nutrients is infl uenced by pH (Figure 1). -
The Nature and Dynamics of Soil Organic Matter: Plant Inputs, Microbial Transformations, and Organic Matter Stabilization
Soil Biology & Biochemistry 98 (2016) 109e126 Contents lists available at ScienceDirect Soil Biology & Biochemistry journal homepage: www.elsevier.com/locate/soilbio Review paper The nature and dynamics of soil organic matter: Plant inputs, microbial transformations, and organic matter stabilization Eldor A. Paul Natural Resource Ecology Laboratory and Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80523-1499, USA article info abstract Article history: This review covers historical perspectives, the role of plant inputs, and the nature and dynamics of soil Received 19 November 2015 organic matter (SOM), often known as humus. Information on turnover of organic matter components, Received in revised form the role of microbial products, and modeling of SOM, and tracer research should help us to anticipate 31 March 2016 what future research may answer today's challenges. Our globe's most important natural resource is best Accepted 1 April 2016 studied relative to its chemistry, dynamics, matrix interactions, and microbial transformations. Humus has similar, worldwide characteristics, but varies with abiotic controls, soil type, vegetation inputs and composition, and the soil biota. It contains carbohydrates, proteins, lipids, phenol-aromatics, protein- Keywords: Soil organic matter derived and cyclic nitrogenous compounds, and some still unknown compounds. Protection of trans- 13C formed plant residues and microbial products occurs through spatial inaccessibility-resource availability, 14C aggregation of mineral and organic constituents, and interactions with sesquioxides, cations, silts, and Plant residue decomposition clays. Tracers that became available in the mid-20th century made the study of SOM dynamics possible. Soil carbon dynamics Carbon dating identified resistant, often mineral-associated, materials to be thousands of years old, 13 Humus especially at depth in the profile. -
Plant Species Effects on Nutrient Cycling: Revisiting Litter Feedbacks
Review Plant species effects on nutrient cycling: revisiting litter feedbacks Sarah E. Hobbie Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108, USA In a review published over two decades ago I asserted reinforce those gradients and patterns of NPP, focusing that, along soil fertility gradients, plant traits change in on feedbacks operating through plant litter decomposition. ways that reinforce patterns of soil fertility and net Specifically, I evaluate two key assumptions underlying primary productivity (NPP). I reevaluate this assertion the plant litter feedback idea: (i) plant litter traits vary in light of recent research, focusing on feedbacks to NPP predictably along fertility gradients, and (ii) such variation operating through litter decomposition. I conclude that reinforces soil fertility gradients through effects on decom- mechanisms emerging since my previous review might position and litter N release. Given the number of synthetic weaken these positive feedbacks, such as negative cross-site analyses of plant traits and their consequences effects of nitrogen on decomposition, while others for nutrient cycling over the past two decades, the time is might strengthen them, such as slower decomposition ripe for revisiting my original assertions. Indeed, I show of roots compared to leaf litter. I further conclude that that my original assertion is more nuanced and complex predictive understanding of plant species effects on than originally claimed. In particular, I discuss the need to nutrient cycling will require developing new frameworks consider leaf litter decomposition more carefully and move that are broadened beyond litter decomposition to con- beyond consideration of leaf litter feedbacks to a more sider the full litter–soil organic matter (SOM) continuum. -
Soil Acidification
Soil Acidification and Pesticide Management pH 5.1 November 14, 2018 MSU Pesticide Education Program pH 3.8 Image courtesy Rick Engel Clain Jones [email protected] 406-994-6076 MSU Soil Fertility Extension What happened here? Image by Sherrilyn Phelps, Sask Pulse Growers Objectives Specifically, I will: 1. Show prevalence of acidification in Montana (similar issue in WA, OR, ID, ND, SD, CO, SK and AB) 2. Review acidification’s cause and contributing factors 3. Show low soil pH impact on crops 4. Explain how this relates to efficacy and persistence of pesticides (specifically herbicides) 5. Discuss steps to prevent or minimize acidification Prevalence: MT counties with at least one field with pH < 5.5 Symbol is not on location of field(s) 40% of 20 random locations in Chouteau County have pH < 5.5. Natural reasons for low soil pH . Soils with low buffering capacity (low soil organic matter, coarse texture, granitic rather than calcareous) . Historical forest vegetation soils < pH than historical grassland . Regions with high precipitation • leaching of nitrate and base cations • higher yields, receive more N fertilizer • often can support continuous cropping and N each yr Agronomic reasons for low soil pH • Nitrification of ammonium-based N fertilizer above plant needs - + ammonium or urea fertilizer + air + H2O→ nitrate (NO3 ) + acid (H ) • Nitrate leaching – less nitrate uptake, less root release of basic - - anions (OH and HCO3 ) to maintain charge balance • Crop residue removal of Ca, Mg, K (‘base’ cations) • No-till concentrates acidity where N fertilizer applied • Legumes acidify their rooting zone through N-fixation. Perennial legumes (e.g., alfalfa) more than annuals (e.g., pea), but much less than fertilization of wheat. -
Soil Salinity in Agricultural Systems: the Basics
Soil Salinity in Agricultural Systems: The Basics Jeffrey L. Ullman Agricultural & Biological Engineering University of Florida Strategies for Minimizing Salinity Problems and Optimizing Crop Production In-Service Training, Hastings, FL March 26, 2013 What is salt? What is Salt? . Salts are more than just sodium chloride (NaCl) . Salts consist of anions and cations . In terms of soil and irrigation water these generally include: Cations Anions Sodium Na+ Chlorides Cl- 2+ 2- Magnesium Mg Sulfates SO4 2+ 2- Calcium Ca Carbonates CO3 - Bicarbonates HCO3 What is Salt? . Other salts in agriculture + Potassium (K ) - Nitrate (NO3 ) Boron (B) • Often as boric acid (H3BO3, often written as B(OH)3) • Can form salts such as sodium borate (borax; Na2B4O7) Photo: Georgia Agriculture What is Salt? H O(l) NaCl(s) 2 Na+(aq) + Cl-(aq) (aq) indicates that Na+ and Cl- are hydrated ions Sodium sulfate Magnesium carbonate Source: Averill and Eldredge (2007) Types of Salts Some common salts NaCl Sodium chloride Table salt (halite) CO 2- 3 KCl Potassium chloride Muriate of potash Na+ 2- NaHCO3 Sodium bicarbonate Baking soda (nahcolite) SO4 - Cl CaSO4 Calcium sulfate Gypsum + K CaCO3 Calcium carbonate Calcite 2+ Ca MgSO Magnesium sulfate Epsom salt (epsomite) Mg2+ 4 K2SO4 Potassium sulfate Sulfate of potash (arcanite) HCO - 3 Glauber’s salt (thenardite Na SO Sodium sulfate 2 4 and mirabilite) Gypsum Calcite Thenardite Sources of Salt . Dissolution of parent rock material . Irrigation water . Saline groundwater . Fertilizers . Manure . Seawater intrusion Photo: J. Ullman Saline Soils . Accumulation of salts known as salination . Can occur in diverse types of soil with different physical, chemical and hydrologic properties Photo: USDA-NRCS Saline Soils . -
Nitrogen Deposition Contributes to Soil Acidification in Tropical Ecosystems
Global Change Biology Global Change Biology (2014), doi: 10.1111/gcb.12665 Nitrogen deposition contributes to soil acidification in tropical ecosystems XIANKAI LU1 , QINGGONG MAO1,2,FRANKS.GILLIAM3 ,YIQILUO4 and JIANGMING MO 1 1Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China, 2University of Chinese Academy of Sciences, Beijing 100049, China, 3Department of Biological Sciences, Marshall University, Huntington, WV 25755-2510, USA, 4Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019, USA Abstract Elevated anthropogenic nitrogen (N) deposition has greatly altered terrestrial ecosystem functioning, threatening eco- system health via acidification and eutrophication in temperate and boreal forests across the northern hemisphere. However, response of forest soil acidification to N deposition has been less studied in humid tropics compared to other forest types. This study was designed to explore impacts of long-term N deposition on soil acidification pro- cesses in tropical forests. We have established a long-term N-deposition experiment in an N-rich lowland tropical for- À1 À1 est of Southern China since 2002 with N addition as NH4NO3 of 0, 50, 100 and 150 kg N ha yr . We measured soil acidification status and element leaching in soil drainage solution after 6-year N addition. Results showed that our study site has been experiencing serious soil acidification and was quite acid-sensitive showing high acidification < < (pH(H2O) 4.0), negative water-extracted acid neutralizing capacity (ANC) and low base saturation (BS, 8%) through- out soil profiles. Long-term N addition significantly accelerated soil acidification, leading to depleted base cations and decreased BS, and further lowered ANC. -
Effects of Litter and Woody Debris Quality on Decomposition and Nutrient Release in Exotic Forests in New Zealand
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. EFFECTS OF LITTER AND WOODY DEBRIS QUALITY ON DECOMPOSITION AND NUTRIENT RELEASE IN EXOTIC FORESTS IN NEW ZEALAND A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by G.K.Girisha Lincoln University 2001 This thesis is dedicated to my parents Keshavamurthy and Saraswathi and my wife Vani ii Abstract of a thesis submitted in partial fulfilment of the requirement for the Degree of Doctor of Philosophy EFFECTS OF LITTER AND WOODY DEBRIS QUALITY ON DECOMPOSITION AND NUTRIENT RELEASE IN EXOTIC FORESTS IN NEW ZEALAND Ganjegunte Keshavamurthy Girisha Short rotation plantation forestry based on exotic tree species (principally radiata pine (Pinus radiata)) is a major land use in New Zealand (1.7 million ha, 7% of total land area). The maintenance of primary production in such a plantation forest ecosystem depends upon a number of factors including replenishment of available nutrients removal in harvested biomass. Litterfall is a major pathway of nutrient return to the forest floor. -
Lowering Soil Ph for Horticulture Crops
PURDUE EXTENSION HO-241-W Commercial Greenhouse and Nursery Production Lowering Soil pH for Horticulture Crops Purdue Horticulture and Michael V. Mickelbart and Kelly M. Stanton, Landscape Architecture Purdue Horticulture and Landscape Architecture www.ag.purdue.edu/HLA Steve Hawkins and James Camberato, Purdue Agronomy Purdue Agronomy www.ag.purdue.edu/AGRY The pH scale measures the acidity or alkalinity of a solution. The scale extends from 0 (a very strong acid) to 14 (a very strong base or highly alkaline). The middle of the scale, 7, is neutral, neither acidic nor basic. Soil pH is important because it affects the availability of nutrients in the rooting zone. This publication explains when lowering soil pH is important for commercial producers and recommends practices to safely and effectively lower soil pH. For more about soil pH, see Purdue Extension publication HO-240-W, Commercial Greenhouse and Nursery Production: Soil pH (available from the Purdue Extension Education Store, www. the-education-store.com). When it comes to soil pH, an accurate diagnosis is essential. Before making any changes, test your soil pH. Purdue Extension provides a list of commercial soil testing labs at: www.ag.purdue.edu/agry/extension/Pages/soil-testing-labs.aspx Why Lower Soil pH? Some plants (such as blueberries or azaleas) are adapted to grow in acid soils — even as low as pH 4.5. If you are trying to grow them you may want a soil pH less than 6, but remember that even acid-loving plants have their limits. Table 1. Effects of soil amendments on pH. -
Soil Salinity Type Effects on the Relationship Betweenthe Electrical
sustainability Article Soil Salinity Type Effects on the Relationship between the Electrical Conductivity and Salt Content for 1:5 Soil-to-Water Extract Amin I. Ismayilov 1, Amrakh I. Mamedov 2,* , Haruyuki Fujimaki 2 , Atsushi Tsunekawa 2 and Guy J. Levy 3 1 Institute of Soil Science and Agrichemistry, Azerbaijan National Academy of Sciences (ANAS), Baku AZ1073, Azerbaijan; [email protected] 2 Arid Land Research Center, Tottori University, Tottori 680-0001, Japan; [email protected] (H.F.); [email protected] (A.T.) 3 Institute of Soil, Water and Environmental Sciences, ARO, Rishon LeZion 7505101, Israel; [email protected] * Correspondence: [email protected] Abstract: Soil salinity severely affects soil ecosystem quality and crop production in semi-arid and arid regions. A vast quantity of data on soil salinity has been collected by research organizations of the Commonwealth of Independent States (CIS, formerly USSR) and many other countries over the last 70 years, but using them in the current international network (irrigation and reclamation strategy) is complicated. This is because in the CIS countries salinity was expressed by total soluble salts as a percentage on a dry-weight basis (total soluble salts, TSS, %) and eight salinity types − 2− − + (chemistry) determined by the ratios of the anions and cations (Cl , SO4 , HCO3 , and Na , Ca2+, Mg2+) in diluted soil water extract (soil/water = 1:5) without assessing electrical conductivity (EC). Measuring the EC (1:5) is more convenient, yet EC is not only affected by the concentration Citation: Ismayilov, A.I.; Mamedov, but also characteristics of the ions and the salinity chemistry. -
Status of Soil Salinity in California
it a major item in his joint presentation percent of construction, operation, and Although progress has been made, the to Congress and meeting with former maintenance costs. Basin states see the need for expanded President Nixon in 1972. In 1975, the Forum recommended wa- salinity control to maintain the numeric ter quality standards for salinity, includ- Proposed solutions criteria. Bills now before Congress would ing numeric criteria of 723 mg/L below authorize five additional salinity control The salinity problem has the potential to Hoover Dam, 747 mg/L below Parker units to be constructed by the Depart- cause lengthy legal and political battles Dam, and 879 mg/L at Imperial Dam. ment of the Interior, give the US. De- between the Upper and Lower Basin Their proposal also called for prompt partment of Agriculture specific author- states. The Lower Basin wants to pre- construction of the salinity control units ity for a program of on-farm Colorado vent salinity increases that would result authorized by P.L. 93-320, construction River salinity control measures in coop- from further upstream development; Up- of additional units upon completion of eration with local landowners, and pro- per Basin states are concerned that the planning reports, implementation of on- vide for 25 percent of the construction salinity issue could prevent future in- farm water management practices to costs to be paid by the Basin states. creases in their water use. control salinity, limitations on industrial In other efforts to control the river’s The states began to work together and municipal discharges, use of saline salinity, the Basin states have adopted a and with the federal government in the water for industrial purposes, and the policy calling for a no-salt return from late 1960s, and in the early 1970s several inclusion of the salinity components of industrial discharges and limiting the steps were taken to deal with the prob- water quality management plans devel- incremental increase permitted from lems. -
The Ecological Role of Coarse Woody Debris an Overview of The
WORKING PAPER 30 The Ecological Role of Coarse Woody Debris An Overview of the Ecological Importance of CWD in BC Forests 1997 Ministry of Forests Research Program The Ecological Role of Coarse Woody Debris An Overview of the Ecological Importance of CWD in BC Forests Victoria Stevens Ministry of Forests Research Program The use of trade, firm, or corporation names in this publication is for the information and convenience of the reader. Such use does not constitute an official endorsement or approval by the Government of British Columbia of any product or service to the exlusion of any others that may also be suitable. Contents of this report are presented for discussion purposes only. Citation Stevens, Victoria. 1997. The ecological role of coarse woody debris: an overview of the ecological importance of CWD in B.C. forests. Res. Br., B.C. Min. For., Victoria, B.C. Work. Pap. 30/1997. Compiled by Victoria Stevens for B.C. Ministry of Forests Research Branch 31 Bastion Square Victoria, B.C. V8W 3E7 Copies of this report may be obtained, depending upon supply, from: B.C. Ministry of Forests Forestry Division Services Branch Production Resources 595 Pandora Avenue, 1st Floor Victoria, B.C. V8W 3E7 © 1997 Province of British Columbia The contents of this report may not be cited in whole or in part without the approval of the Director of Research, B.C. Ministry of Forests, Victoria, B.C. ACKNOWLEDGEMENTS Plunging into a subject as complex as ecological roles of coarse woody debris is not an activity lending itself to solitude. This paper has been at least partially digested by a large number of readers and greatly improved by the suggestions of many.