An Annotated Checklist of the Inland Fishes of Sulawesi
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Micromorphological Observation of the Anterior Gut of Sulawesi Medaka Fish (Oryzias Celebensis)
Int.J.Curr.Microbiol.App.Sci (2018) 7(2): 2942-2946 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 7 Number 02 (2018) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2018.702.357 Micromorphological Observation of the Anterior Gut of Sulawesi Medaka Fish (Oryzias celebensis) Dwi Kesuma Sari1*, Irma Andriani2 and Khusnul Yaqin3 1Study Program of Veterinary Medicine, Faculty of Medicine, Hasanuddin University, Jl. Perintis kemerdekaan Km. 10, Makassar, South Sulawesi, Indonesia 2Pstudy Program of Biology, Faculty of Mathematics and Natural Sciences, Hasanuddin University, Indonesia 3Faculty of Marine Sciences and Fisheries, Hasanuddin University, Indonesia *Corresponding author ABSTRACT K e yw or ds The use of medaka fish as a candidate animal model has been started which has similarities Sulawesi medaka with the Zebra fish that was developed as an animal model. Sulawesi medaka fish (Oryzias fish, Anterior gut, celebensis) is a type of medaka fish that are endemic in the region of South Sulawesi. This Buccal cavity, research aims to observe the histology of anterior gut of Sulawesi medaka fish. Oesophagus Histological study on the anterior gut of Sulawesi medaka fish using buccal cavity and oesophagus organs. Histological observation showed that the mouth and buccal cavity are Article Info shared by the respiratory and digestive systems. Also in Sulawesi medaka fish we found Accepted: the lining of the buccal cavity consists of mucoid epithelium on a thick basement 26 January 2018 membrane with numerous goblet cells. In general the structure of the anterior gut system in Available Online: Sulawesi medaka fish similar with Zebra fish as well as other Teleostei fish. -
Measuring Productivity of Australian Tropical Estuaries Using Standing Stock Analysis
ResearchOnline@JCU This file is part of the following work: Fries, Jakob (2019) Measuring productivity of Australian tropical estuaries using standing stock analysis. Masters (Research) Thesis, James Cook University. Access to this file is available from: https://doi.org/10.25903/km1r%2D5n34 Copyright © 2019 Jakob Fries. The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owners of any third party copyright material included in this document. If you believe that this is not the case, please email [email protected] Measuring productivity of Australian tropical estuaries using standing stock analysis Thesis submitted by Jakob Fries December 2019 For the degree of Master of Philosophy College of Science and Engineering School of Marine Biology and Aquaculture James Cook University Abstract Increasingly, anthropogenic use of ecosystems is resulting in cumulative degradation of ecosystem functions and the values held by these systems. Threats from nutrient pollution, catchment scale modifications to land use and water flows are increasing. This is concerning for estuarine and coastal fisheries as estuarine producers are inextricably linked to land-derived nutrients and freshwater flows. In tropical estuarine ecosystems the complexity and variability of environmental, biological, and ecological factors culminate in a matrix of largely unknown causal relationships. Because of this, our knowledge of land use impacts on fisheries is limited. Additionally, the disjunction of current measurement scales and impact scales has reduced our ability to measure the resultant impacts on estuarine ecosystems. Therefore, to fully understand anthropogenic impacts on estuarine ecosystems, integrative measures of ecosystem health, functioning, and productive output are required. -
Iktiofauna Air Tawar Beberapa Danau Dan Sungai Inletnya Di Provinsi Sulawesi Tengah, Indonesia
©Journal of Aquatropica Asia p-issn: 2407-3601 Volume 4, Nomor 1, Tahun 2019 Jurusan Akuakultur, Universitas Bangka Belitung IKTIOFAUNA AIR TAWAR BEBERAPA DANAU DAN SUNGAI INLETNYA DI PROVINSI SULAWESI TENGAH, INDONESIA FREHSWATER FISH OF LAKES AND IT’S INLET RIVERS IN SULAWESI TENGAH PROVINCE, INDONESIA Muh. Herjayanto1,5,6,., Abdul Gani2,6, Yeldi S. Adel3, Novian Suhendra4,6 1Program Studi Ilmu Perikanan, Fakultas Pertanian, Universitas Sultan Ageng Tirtayasa, Serang, Indonesia 2Program Studi Akuakultur, Fakultas Perikanan, Universitas Muhammadiyah Luwuk, Banggai, Indonesia 3Program Studi Teknologi Penangkapan Ikan, Sekolah Tinggi Perikanan dan Kelautan Palu, Indonesia 4Stasiun Karantina Ikan Pengendalian Mutu dan Keamanan Hasil Perikanan Palu, Indonesia 5Masyarakat Iktiologi Indonesia 6Tim Ekspedisi Riset Akuatika (ERA) Indonesia .email penulis korespondensi: [email protected] Abstrak Provinsi Sulawesi Tengah (Sulteng) berada dalam kawasan Wallacea memiliki ikan endemik di danau serta sungai inletnya. Selain itu, pemerintah juga telah melakukan introduksi ikan ke perairan umum untuk kesejahteraan masyarakat. Sejauh ini catatan iktiofauna air tawar di Sulteng belum terangkum dengan baik. Oleh karena itu, kami menelusuri hasil penelitian terdahulu tentang jenis ikan di 11 danau dan sungai inletnya di Sulteng. Danau (D) tersebut yaitu D. Bolano (Bolanosau), D. Lindu, D. Poso, D. Rano, D. Rano Kodi dan D. Rano Bae, Danau Sibili, D. Talaga (Dampelas), D. Kalimpa’a (Tambing), D. Tiu dan D. Wanga. Selain itu, kami juga melakukan pengamatan ikan di tujuh danau antara tahun 2012-2019. Penangkapan ikan menggunakan jaring lempar, jaring pantai, pukat insang dan pancing. Hasil rangkuman dan pengamatan menunjukkan bahwa terdapat 18 famili dan 27 genus ikan di 11 danau dan sungai inletnya di Sulteng. -
Collection of Freshwater and Coastal Fishes from Sulawesi Tenggara, Indonesia [Koleksi Ikan-Ikan Air Tawar Dan Pantai Di Sulawesi Tenggara] Lynne R
Jurnal Iktiologi Indonesia, 14(1):1-19 Collection of freshwater and coastal fishes from Sulawesi Tenggara, Indonesia [Koleksi ikan-ikan air tawar dan pantai di Sulawesi Tenggara] Lynne R. Parenti1,, Renny K. Hadiaty2, Daniel N. Lumbantobing1,3 1National Museum of Natural History, Smithsonian Institution PO Box 37012, NHB MRC 159, Washington, D.C. 20013-7012 USA 2Museum Zoologicum Bogoriense, Division of Zoology, Research Center for Biology Indonesian Institute of Sciences (LIPI) Jln. Raya Jakarta-Bogor Km 46, Cibinong 16911, Indonesia 3Florida Museum of Natural History Museum Road and Newell Drive, Gainesville, FL 32611-7800. Received: October 9, 2013; Accepted: January 21, 2014 Abstract We report 69 fish species in 34 teleost families nearly all collected during a preliminary survey of the Sungai Pohara and coastal localities in Sulawesi Tenggara, including Muna Island, in June 2010. Of these species, nine are introduced or exotic and another is questionably native. The family Gobiidae is the most diverse taxon, represented by 14 native species. Atherinomorph fishes of the family Adrianichthyidae are represented in the province by four endemic species and two others that are widespread, all in the genus Oryzias. This fish fauna contrasts sharply with the riverine ichthyo- fauna of the adjacent Sulawesi Tenggara islands of Buton and Kabaena in which there are reportedly no ricefishes and few endemics. New species are being described by the field team and collaborators. Our ultimate goal is to discover, describe, highlight, understand and encourage the conservation of the native freshwater and coastal fish biota of Sula- wesi. Keywords: endemic fishes, introduced species, Oryzias, Sungai Pohara Abstrak Kami melaporkan hasil survei pendahuluan di Sungai Pohara dan perairan pantai di Sulawesi Tenggara, termasuk Pulau Muna. -
Characterization of the G Protein-Coupled Receptor Family
www.nature.com/scientificreports OPEN Characterization of the G protein‑coupled receptor family SREB across fsh evolution Timothy S. Breton1*, William G. B. Sampson1, Benjamin Cliford2, Anyssa M. Phaneuf1, Ilze Smidt3, Tamera True1, Andrew R. Wilcox1, Taylor Lipscomb4,5, Casey Murray4 & Matthew A. DiMaggio4 The SREB (Super‑conserved Receptors Expressed in Brain) family of G protein‑coupled receptors is highly conserved across vertebrates and consists of three members: SREB1 (orphan receptor GPR27), SREB2 (GPR85), and SREB3 (GPR173). Ligands for these receptors are largely unknown or only recently identifed, and functions for all three are still beginning to be understood, including roles in glucose homeostasis, neurogenesis, and hypothalamic control of reproduction. In addition to the brain, all three are expressed in gonads, but relatively few studies have focused on this, especially in non‑mammalian models or in an integrated approach across the entire receptor family. The purpose of this study was to more fully characterize sreb genes in fsh, using comparative genomics and gonadal expression analyses in fve diverse ray‑fnned (Actinopterygii) species across evolution. Several unique characteristics were identifed in fsh, including: (1) a novel, fourth euteleost‑specifc gene (sreb3b or gpr173b) that likely emerged from a copy of sreb3 in a separate event after the teleost whole genome duplication, (2) sreb3a gene loss in Order Cyprinodontiformes, and (3) expression diferences between a gar species and teleosts. Overall, gonadal patterns suggested an important role for all sreb genes in teleost testicular development, while gar were characterized by greater ovarian expression that may refect similar roles to mammals. The novel sreb3b gene was also characterized by several unique features, including divergent but highly conserved amino acid positions, and elevated brain expression in pufer (Dichotomyctere nigroviridis) that more closely matched sreb2, not sreb3a. -
Beloniformes, Adrianichthyidae) Endemic to Sulawesi, Indonesia( Digest 要約 )
Phylogenetic and taxonomic studies of the medaka Title (Beloniformes, Adrianichthyidae) endemic to Sulawesi, Indonesia( Digest_要約 ) Author(s) Mokodongan, Daniel Frikli Citation Issue Date 2016-09 URL http://hdl.handle.net/20.500.12000/35389 Rights Abstract Although the family Adrianichthyidae is broadly distributed throughout East and Southeast Asia, 19 endemic species are distributed in Sulawesi, which is an island in Wallacea. However, it remains unclear how Adrianichthyidae biodiversity hotspot was shaped. Moreover, seven of the 19 endemic species were described within this decade, suggesting that we still do not know the full picture of the biodiversity of this family in this small island ofthe Indo-Australian Archipelago. First, I reconstructed molecular phylogenies for the Sulawesi adrianichthyids and estimated the divergence times of major lineages to infer the detailed history of their origin and subsequent intra-island diversification. The mitochondrial and nuclear phylogenies revealed that Sulawesi adrianichthyids are monophyletic, which indicates that they diverged from a single common ancestor. Species in the earliest branching lineages are currently distributed in the central and southeastern parts of Sulawesi, indicating that the common ancestor colonized Sula Spur, which is a large promontory that projects from the Australian continental margin, from Asia by tectonic dispersal c.a. 20 Mya. The first diversification event on Sulawesi, the split of the genus Adrianichthys, occurred c.a. 16 Mya, and resulted in the nesting of the genus Adrianichthys within Oryzias. Strong geographic structure was evident in the phylogeny; many species in the lineages branching off early are riverine and widely distributed in the southeastern and southwestern arms of Sulawesi, which suggests that oversea dispersal between tectonic subdivisions of this island during the late Miocene (7-5 Mya) contributed to the distributions and diversification of the early branching lineages. -
Cambodian Journal of Natural History
Cambodian Journal of Natural History Artisanal Fisheries Tiger Beetles & Herpetofauna Coral Reefs & Seagrass Meadows June 2019 Vol. 2019 No. 1 Cambodian Journal of Natural History Editors Email: [email protected], [email protected] • Dr Neil M. Furey, Chief Editor, Fauna & Flora International, Cambodia. • Dr Jenny C. Daltry, Senior Conservation Biologist, Fauna & Flora International, UK. • Dr Nicholas J. Souter, Mekong Case Study Manager, Conservation International, Cambodia. • Dr Ith Saveng, Project Manager, University Capacity Building Project, Fauna & Flora International, Cambodia. International Editorial Board • Dr Alison Behie, Australia National University, • Dr Keo Omaliss, Forestry Administration, Cambodia. Australia. • Ms Meas Seanghun, Royal University of Phnom Penh, • Dr Stephen J. Browne, Fauna & Flora International, Cambodia. UK. • Dr Ou Chouly, Virginia Polytechnic Institute and State • Dr Chet Chealy, Royal University of Phnom Penh, University, USA. Cambodia. • Dr Nophea Sasaki, Asian Institute of Technology, • Mr Chhin Sophea, Ministry of Environment, Cambodia. Thailand. • Dr Martin Fisher, Editor of Oryx – The International • Dr Sok Serey, Royal University of Phnom Penh, Journal of Conservation, UK. Cambodia. • Dr Thomas N.E. Gray, Wildlife Alliance, Cambodia. • Dr Bryan L. Stuart, North Carolina Museum of Natural Sciences, USA. • Mr Khou Eang Hourt, National Authority for Preah Vihear, Cambodia. • Dr Sor Ratha, Ghent University, Belgium. Cover image: Chinese water dragon Physignathus cocincinus (© Jeremy Holden). The occurrence of this species and other herpetofauna in Phnom Kulen National Park is described in this issue by Geissler et al. (pages 40–63). News 1 News Save Cambodia’s Wildlife launches new project to New Master of Science in protect forest and biodiversity Sustainable Agriculture in Cambodia Agriculture forms the backbone of the Cambodian Between January 2019 and December 2022, Save Cambo- economy and is a priority sector in government policy. -
KAJIANILMIAHIKAN PELANGI {Marosatherina Ladigesi (Ahl 1936)} FAUNA ENDEMIK SULAWESI [Scientific Review of a Rainbow Fish {Marosa
Berita Biologi 8(6) - Desember 2007 KAJIANILMIAHIKAN PELANGI {Marosatherina ladigesi (Ahl 1936)} FAUNA ENDEMIK SULAWESI [Scientific review of a rainbow fish {Marosatherina ladigesi (Ahl 1936)} an endemic fauna of Sulawesi] Renny Kurnia Hadiaty Bidang Zoologi, Puslit Biologi-LIPI Jl. Raya Bogor Km 46, Cibinong 16911; email13: [email protected] ABSTRACT Marosatherina ladigesi is one of the famous rainbow fish species from Sulawesi. This endemic fish species from Sulawesi is one of the Indonesian export commodity since more than 30 years ago. All of the export specimens come from the wild habitat. The anxiousness of the extinction of this species stated in the redlist of IUCN since 1994. Two field work of Maros Karst Project conducted in 2006, 2007 and an international expedition in 2007 showed the decreasing population of this species. The results of the three field trips showed the difficulties to get M. ladigesi in the streams. Taxonomical status and classification, coloration, sex dimorphism and distribution discussed. Kata kunci: Marosatherina ladigesi, endemik, langka, Sulawesi PENDAHULUAN Ikan Hias Indonesia (PIHI) menggunakan satu jenis Ikan Pelangi atau 'rainbow fish' sudah lama Pelangi Sulawesi, yaitu jenis Marosatherina ladigesi dikenal oleh masyarakat Indonesia. Dinamai ikan sebagai logo dari organisasi tersebut. Pelangi karena pola warnanya yang menyerupai Ikan Pelangi Sulawesi sangat populer di pelangi. Ikan ini cukup populer di kalangan penggemar kalangan penggemar ikan hias di dunia, hasil pencarian ikan hias, karena mudah dipelihara dan harganya pun di situs internet diperoleh 2080 judul untukM ladigesi. tidak terlalu mahal. Ikan Pelangi yang beredar di Ironisnya, masyarakat yang tinggal di habitat asli ikan pasaran dalam negeri berasal dari Propinsi Papua. -
91 I. PENDAHULUAN Danau Poso Merupakan Aset Dunia Karena
Media Litbang Sulteng III (2) : 137 – 143, September 2010 ISSN : 1979 - 5971 KERAPATAN, KEANEKARAGAMAN DAN POLA PENYEBARAN GASTROPODA AIR TAWAR DI PERAIRAN DANAU POSO Oleh : Meria Tirsa Gundo ABSTRAK Gastropoda merupakan salah satu Kelas dari Fillum Mollusca, dan merupakan salah satu jenis komunitas fauna bentik yang hidup didasar perairan. Komunitas fauna bentik ini banyak ditemukan di perairan danau Poso, namun hingga saat ini data tentang bioekologinya masih sangat kurang sehingga perlu dilakukan penelitian. Penelitian ini dilaksanakan di Danau Poso Sulawesi Tengah pada bulan Oktober - Desember 2009. Stasiun pengamatan ditentukan berdasarkan model area sampling yaitu suatu tehnik penentuan areal sampling dengan mempertimbangkan wakil-wakil dari daerah feografis. Tujuan penelitian ini adalah untuk mengetahui spesies, kerapatan, pola penyebaran dan keanekaragaman Gastropoda di danau poso, menggunakan Metode pendekatan menurut Cox (1967) untuk mengetahui kerapatan; Ludwing and Reynolds (1988) untuk mengetahui indeks keanekaragaman Shannon-Wienner (H’); Krebs (1989) untuk mengetahui Indeks keseragaman (E) dan Indeks Sebaran Morishita (Iδ); Odum (1971) untuk mengetahui Indeks Dominasi (C). Berdasarkan hasil penelitian diketahui delapan jenis gastropoda yang ditemukan di danau Poso yaitu: Tylomelania toradjarum, Tylomelania patriarchalis, Tylomeliana neritiformis, Tylomeliana kuli, Tylomeliana palicolarum, Tylomeliana bakara, Tylomeliana sp1, Tylomeliana sp2. Hasil penelitian menunjukkan Kerapatan gastropoda paling tinggi ditemukan di stasiun I, yaitu di bagian Utara danau Poso dengan 119,25 ind/m². Stasiun II dan stasiun IV memiliki nilai Indeks Keanekaragaman spesies yang masuk dalam kategori sedang, sedang dua stasiun lainnya masuk dalam kategori rendah. Penyebaran jenis individu gastropoda di danau Poso memiliki dua pola yaitu bersifat seragam dan mengelompok. Kata Kunci: Gastropoda Air Tawar, danau Poso, kerapatan, pola penyebaran, keanekaragaman. -
A Revised Taxonomic Account of Ricefish Oryzias (Beloniformes; Adrianichthyidae), in Thailand, Indonesia and Japan
The Natural History Journal of Chulalongkorn University 9(1): 35-68, April 2009 ©2009 by Chulalongkorn University A Revised Taxonomic Account of Ricefish Oryzias (Beloniformes; Adrianichthyidae), in Thailand, Indonesia and Japan WICHIAN MAGTOON 1* AND APHICHART TERMVIDCHAKORN 2 1 Department of Biology, Faculty of Science, Srinakharinwirot University, Bangkok 10110, Thailand 2 Inland Fisheries Research and Development Bureau, Department of Fisheries, Bangkok 10900, Thailand ABSTRACT.– A taxonomic account of Oryzias minutillus, O. mekongensis, O. dancena, and O. javanicus from Thailand, O. celebensis from Indonesia and O. latipes from Japan are redescribed. Six distinct species are recognized. Keys, descriptions and illustrations of the species are presented. Morphological differences between and within all six species are clarified. Twenty-two morphometric characters and ten meristic characters were examined, and 14 morphometric and nine meristic characters were found to differ amongst the six species. Anal-fin ray numbers of O. cellebensis, O. javanicus, O. dancena, O. minutillus, O. latipes and O. mekongensis were 22, 23, 24, 19, 18 and 15, respectively. These differences suggest that the six species may be reproductively isolated from each other. KEY WORDS: Oryzias, Revision, Morphological difference, Cluster analysis four species are known from Thailand, Laos, INTRODUCTION Myanmar, and Vietnam, but eleven species are found from Indonesia and one species in Ricefish of the genus Oryzias belong to Japan (Magtoon, 1986; Roberts, 1998; the family Adrianichthyidae and are widely Kotellat 2001a, b; Parenti and Soeroto, 2004; distributed in South, East and Southeast Asia Parenti, 2008). and southwards to Sulawesi and the Timor Recently, there have been several studies islands (Yamamoto, 1975; Labhart, 1978; published on various aspects of Oryzias Uwa and Parenti, 1988; Chen et al., 1989; biology, for instance on the comparative Uwa, 1991a; Roberts, 1989, 1998). -
Proquest Dissertations
GENE FLOW & DISPERSAL AS FACTORS MEDIATING POPULATION DIVERGENCE, ADMIXTURE AND SPECIATION IN FISHES by RyanP Walter B.Sc, SUNY Brockport, NY, 2000 M.Sc, SUNY Brockport, NY, 2002 A Dissertation Submitted to the Faculty of Graduate Studies through the Great Lakes Institute for Environmental Research in partial fulfillment of the Requirements for the Degree of Doctor of Philosophy at the University of Windsor Windsor, Ontario, Canada 2009 © 2009 Ryan Walter Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington OttawaONK1A0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre re'terence ISBN: 978-0-494-82070-4 Our file Notre reference ISBN: 978-0-494-82070-4 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, preter, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent etre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation.