The First Record of the Genus Lamellibrachia (Siboglinidae
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Zinc-Mediated Sulfide-Binding Mechanism of Hydrothermal Vent Tubeworm 400-Kda Hemoglobin
Cah. Biol. Mar. (2006) 47 : 371-377 The zinc-mediated sulfide-binding mechanism of hydrothermal vent tubeworm 400-kDa hemoglobin Jason F. FLORES1* and Stéphane M. HOURDEZ2 (1) Department of Biology, The Pennsylvania State University *Corresponding author: The University of North Carolina at Charlotte, Department of Biology, 9201 University City Boulevard, Charlotte, NC 28223, USA, FAX: 704-687-3128, E-mail: [email protected] (2) Université Pierre & Marie Curie-Paris 6, CNRS-UMR 7144 AD2M, Equipe Ecophysiologie Adaptation et Evolution Moleculaires, Station Biologique de Roscoff, 29680 Roscoff, France Abstract: Hydrothermal vent and cold seep tubeworms possess two hemoglobin (Hb) types, a 3600-kDa hexagonal bilayer Hb as well as a 400-kDa spherical Hb. Both Hbs can reversibly and simultaneously bind and transport oxygen and hydrogen sulfide used by the worm’s endosymbiotic bacteria to fix carbon. The vestimentiferan 400-kDa Hb has been shown to consist of 24 polypeptide chains and 12 zinc ions that are bound to specific amino acids within the six A2 globin chains of the molecule. Flores et al. (2005) determined that the ligated zinc ions were directly involved in the sulfide binding mechanism of this Hb. This discovery contradicted previous work suggesting that free-cysteine residues were the sole sulfide binding mechanism of the 400-kDa Hb. In the present study, we investigated the effects of acidic pH pretreatment and zinc chelator concentrations on the binding of sulfide by the Hb. We show that acidic pH pretreatment, as well as NEM capping of free-cysteines, does not affect sulfide binding by the purified Hb. -
Geo-Biological Coupling of Authigenic Carbonate Formation and Autotrophic Faunal Colonization at Deep-Sea Methane Seeps II. Geo-Biological Landscapes
Chapter 3 Geo-Biological Coupling of Authigenic Carbonate Formation and Autotrophic Faunal Colonization at Deep-Sea Methane Seeps II. Geo-Biological Landscapes TakeshiTakeshi Naganuma Naganuma Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.78978 Abstract Deep-sea methane seeps are typically shaped with authigenic carbonates and unique biomes depending on methane-driven and methane-derived metabolisms. Authigenic carbonates vary in δ13C values due probably to 13δC variation in the carbon sources (directly carbon dioxide and bicarbonate, and ultimately methane) which is affected by the generation and degradation (oxidation) of methane at respective methane seeps. Anaerobic oxidation of methane (AOM) by specially developed microbial consortia has significant influences on the carbonate13 δ C variation as well as the production of carbon dioxide and hydrogen sulfide for chemoautotrophic biomass production. Authigenesis of carbonates and faunal colonization are thus connected. Authigenic carbonates also vary in Mg contents that seem correlated again to faunal colonization. Among the colonizers, mussels tend to colonize low δ13C carbonates, while gutless tubeworms colonize high- Mg carbonates. The types and varieties of such geo-biological landscapes of methane seeps are overviewed in this chapter. A unique feature of a high-Mg content of the rock- tubeworm conglomerates is also discussed. Keywords: lithotrophy, chemoautotrophy, thiotrophy, methanotrophy, stable carbon isotope, δ13C, isotope fractionation, Δ13C, calcite, dolomite, anaerobic oxidation of methane (AOM), sulfate-methane transition zone (SMTZ), Lamellibrachia tubeworm, Bathymodiolus mussel, Calyptogena clam 1. Introduction Aristotle separated the world into two realms, nature and living things (originally animals), the latter having structures, processes, and functions of spontaneous formation and voluntary © 2016 The Author(s). -
Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk University of Southampton Reproductive Ecology of Vestimentifera (Polychaeta: Siboglinidae) from Hydrothermal Vents and Cold Seeps PhD Dissertation submitted by Ana Hil´ario to the Graduate School of the National Oceanography Centre, Southampton in partial fulfillment of the requirements for the degree of Doctor of Philosophy June 2005 Graduate School of the National Oceanography Centre, Southampton This PhD dissertation by Ana Hil´ario has been produced under the supervision of the following persons Supervisors Prof. Paul Tyler and Dr Craig Young Chair of Advisory Panel Dr Martin Sheader Member of Advisory Panel Dr Jonathan Copley I hereby declare that no part of this thesis has been submitted for a degree to the University of Southampton, or any other University, at any time previously. The material included is the work of the author, except where expressly stated. -
A Metapopulation Model for Whale-Fall Specialists: the Largest Whales Are Essential to Prevent Species Extinctions
THE SEA: THE CURRENT AND FUTURE OCEAN Journal of Marine Research, 77, Supplement, 283–302, 2019 A metapopulation model for whale-fall specialists: The largest whales are essential to prevent species extinctions by Craig R. Smith,1,2 Joe Roman,3 and J. B. Nation4 ABSTRACT The sunken carcasses of great whales (i.e., whale falls) provide an important deep-sea habitat for more than 100 species that may be considered whale-fall specialists. Commercial whaling has reduced the abundance and size of whales, and thus whale-fall habitats, as great whales were hunted and removed from the oceans, often to near extinction. In this article, we use a metapopulation modeling approach to explore the consequences of whaling to the abundance and persistence of whale-fall habitats in the deep sea and to the potential for extinction of whale-fall specialists. Our modeling indicates that the persistence of metapopulations of whale-fall specialists is linearly related to the abundance of whales, and extremely sensitive (to the fourth power) to the mean size of whales. Thus, whaling-induced declines in the mean size of whales are likely to have been as important as declines in whale abundance to extinction pressure on whale-fall specialists. Our modeling also indicates that commercial whaling, even under proposed sustainable yield scenarios, has the potential to yield substantial extinction of whale-fall specialists. The loss of whale-fall habitat is likely to have had the greatest impact on the diversity of whale-fall specialists in areas where whales have been hunted for centuries, allowing extinctions to proceed to completion. -
A Microbiological and Biogeochemical Investigation of the Cold Seep
Deep Sea Research Part I: Oceanographic Archimer Research Papers http://archimer.ifremer.fr August 2014, Volume 90, Pages 105-114 he publisher Web site Webpublisher he http://dx.doi.org/10.1016/j.dsr.2014.05.006 © 2014 Elsevier Ltd. All rights reserved. A microbiological and biogeochemical investigation of the cold seep is available on t on available is tubeworm Escarpia southwardae (Annelida: Siboglinidae): Symbiosis and trace element composition of the tube Sébastien Duperrona, *, Sylvie M. Gaudrona, Nolwenn Lemaitreb, c, d, Germain Bayonb authenticated version authenticated - a Sorbonne Universités, Université Pierre et Marie Curie Paris 06, UMR7208 Laboratoire Biologie des Organismes Aquatiques et Ecosystèmes, 7 quai St Bernard, 75005 Paris, France b IFREMER, Unité de Recherche Géosciences Marines, F-29280 Plouzané, France c UEB, Université Européenne de Bretagne, F-35000 Rennes, France d IUEM, Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, CNRS UMS 3113, IUEM, F-29280 Plouzané, France *: Corresponding author : Sébastien Duperron, t el.: +33 0 1 44 27 39 95 ; fax: +33 0 1 44 27 58 01 ; email address : [email protected] Abstract: Tubeworms within the annelid family Siboglinidae rely on sulfur-oxidizing autotrophic bacterial symbionts for their nutrition, and are among the dominant metazoans occurring at deep-sea hydrocarbon seeps. Contrary to their relatives from hydrothermal vents, sulfide uptake for symbionts occurs within the anoxic subsurface sediment, in the posterior „root‟ region of the animal. This study reports on an integrated microbiological and geochemical investigation of the cold seep tubeworm Escarpia southwardae collected at the Regab pockmark (Gulf of Guinea). Our aim was to further constrain the links between the animal and its symbiotic bacteria, and their environment. -
Genomic Adaptations to Chemosymbiosis in the Deep-Sea Seep-Dwelling Tubeworm Lamellibrachia Luymesi Yuanning Li1,2* , Michael G
Li et al. BMC Biology (2019) 17:91 https://doi.org/10.1186/s12915-019-0713-x RESEARCH ARTICLE Open Access Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi Yuanning Li1,2* , Michael G. Tassia1, Damien S. Waits1, Viktoria E. Bogantes1, Kyle T. David1 and Kenneth M. Halanych1* Abstract Background: Symbiotic relationships between microbes and their hosts are widespread and diverse, often providing protection or nutrients, and may be either obligate or facultative. However, the genetic mechanisms allowing organisms to maintain host-symbiont associations at the molecular level are still mostly unknown, and in the case of bacterial-animal associations, most genetic studies have focused on adaptations and mechanisms of the bacterial partner. The gutless tubeworms (Siboglinidae, Annelida) are obligate hosts of chemoautotrophic endosymbionts (except for Osedax which houses heterotrophic Oceanospirillales), which rely on the sulfide- oxidizing symbionts for nutrition and growth. Whereas several siboglinid endosymbiont genomes have been characterized, genomes of hosts and their adaptations to this symbiosis remain unexplored. Results: Here, we present and characterize adaptations of the cold seep-dwelling tubeworm Lamellibrachia luymesi, one of the longest-lived solitary invertebrates. We sequenced the worm’s ~ 688-Mb haploid genome with an overall completeness of ~ 95% and discovered that L. luymesi lacks many genes essential in amino acid biosynthesis, obligating them to products provided by symbionts. Interestingly, the host is known to carry hydrogen sulfide to thiotrophic endosymbionts using hemoglobin. We also found an expansion of hemoglobin B1 genes, many of which possess a free cysteine residue which is hypothesized to function in sulfide binding. -
Phylogenomics of Tubeworms (Siboglinidae, Annelida) and Comparative Performance of Different Reconstruction Methods
Zoologica Scripta Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative performance of different reconstruction methods YUANNING LI,KEVIN M. KOCOT,NATHAN V. WHELAN,SCOTT R. SANTOS,DAMIEN S. WAITS, DANIEL J. THORNHILL &KENNETH M. HALANYCH Submitted: 28 January 2016 Li, Y., Kocot, K.M., Whelan, N.V., Santos, S.R., Waits, D.S., Thornhill, D.J. & Halanych, Accepted: 18 June 2016 K.M. (2016). Phylogenomics of tubeworms (Siboglinidae, Annelida) and comparative perfor- doi:10.1111/zsc.12201 mance of different reconstruction methods. —Zoologica Scripta, 00: 000–000. Deep-sea tubeworms (Annelida, Siboglinidae) represent dominant species in deep-sea chemosynthetic communities (e.g. hydrothermal vents and cold methane seeps) and occur in muddy sediments and organic falls. Siboglinids lack a functional digestive tract as adults, and they rely on endosymbiotic bacteria for energy, making them of evolutionary and physi- ological interest. Despite their importance, inferred evolutionary history of this group has been inconsistent among studies based on different molecular markers. In particular, place- ment of bone-eating Osedax worms has been unclear in part because of their distinctive biol- ogy, including harbouring heterotrophic bacteria as endosymbionts, displaying extreme sexual dimorphism and exhibiting a distinct body plan. Here, we reconstructed siboglinid evolutionary history using 12 newly sequenced transcriptomes. We parsed data into three data sets that accommodated varying levels of missing data, and we evaluate effects of miss- ing data on phylogenomic inference. Additionally, several multispecies-coalescent approaches and Bayesian concordance analysis (BCA) were employed to allow for a compar- ison of results to a supermatrix approach. Every analysis conducted herein strongly sup- ported Osedax being most closely related to the Vestimentifera and Sclerolinum clade, rather than Frenulata, as previously reported. -
Systematics, Evolution and Phylogeny of Annelida – a Morphological Perspective
Memoirs of Museum Victoria 71: 247–269 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Systematics, evolution and phylogeny of Annelida – a morphological perspective GÜNTER PURSCHKE1,*, CHRISTOPH BLEIDORN2 AND TORSTEN STRUCK3 1 Zoology and Developmental Biology, Department of Biology and Chemistry, University of Osnabrück, Barbarastr. 11, 49069 Osnabrück, Germany ([email protected]) 2 Molecular Evolution and Animal Systematics, University of Leipzig, Talstr. 33, 04103 Leipzig, Germany (bleidorn@ rz.uni-leipzig.de) 3 Zoological Research Museum Alexander König, Adenauerallee 160, 53113 Bonn, Germany (torsten.struck.zfmk@uni- bonn.de) * To whom correspondence and reprint requests should be addressed. Email: [email protected] Abstract Purschke, G., Bleidorn, C. and Struck, T. 2014. Systematics, evolution and phylogeny of Annelida – a morphological perspective . Memoirs of Museum Victoria 71: 247–269. Annelida, traditionally divided into Polychaeta and Clitellata, is an evolutionary ancient and ecologically important group today usually considered to be monophyletic. However, there is a long debate regarding the in-group relationships as well as the direction of evolutionary changes within the group. This debate is correlated to the extraordinary evolutionary diversity of this group. Although annelids may generally be characterised as organisms with multiple repetitions of identically organised segments and usually bearing certain other characters such as a collagenous cuticle, chitinous chaetae or nuchal organs, none of these are present in every subgroup. This is even true for the annelid key character, segmentation. The first morphology-based cladistic analyses of polychaetes showed Polychaeta and Clitellata as sister groups. -
A PDF of How Long Animals Live: the Life Spans of 50 Animals
How Long Animals Live THE LIFE SPANS OF 50 ANIMALS Mammals Amphibians Reptiles Birds Fish Echinoderms Mollusks Worms Sponges Cnidarians Arthropods HOUSE MOUSE Mus musculus PIGEON FOWLER’S TOAD Columba livia Anaxyrus fowleri 1 (YEAR) 5 KANGAROO SQUIRREL (WESTERN GREY) (EASTERN GREY) Macropus Sciurus carolinensis fuliginosus RATTLESNAKE PRONGHORN EMU CHICKEN CHEETAH (EASTERN Antilocpra Dromaius Gallus gallus Acinonyx 6 DOG americana novaehollandiae domesticus jubatus Canis lupus DIAMONDBACK) familiaris Crotalus 10 adamanteus 13 15 COW AMERICAN BISON Bos taurus Bison bison SOUTHERN TWO-TOED SLOTH CHANNEL RED-CROWNED GRIZZLY BEAR BOBCAT Choloepus CATFISH CRANE Ursus arctos ssp. Lynx rufus 20 didactylus Ictalurus Grus japonensis punctatus TIGER Panthera tigris 30 25 POLAR BEAR HORSE Ursus maritimus Equus ferus caballus NAKED MOLE RAT BURMESE ROCK Heterocephalus glaber PYTHON ORANGUTAN Python molurus Pongo abelii, bivattatus 50 Pongo pygmaeus One New York Koi have been specimen, reported to live George, lived between 100 to be 140 and 200 years years old. in captivity. 45 LOBSTER AMERICAN ALLIGATOR KOI ASIAN ELEPHANT ANDEAN CONDOR Nephropidae Alligator mississippiensis Cyprinus Elephas maximus Vultur gryphus (family) rubrofuscus BALD EAGLE JAPANESE GIANT RADIATED TORTOISE TUATARA Haliaeetus SALAMANDER Geochelone radiata Sphenodon GREATER GREEN-WINGED Ieucocephalus Andrias japonicus 50 These blind punctatus FLAMINGO MACAW cave Phoenicopterus Ara chloroptera salamanders roseus can live to 100. OLM Proteus anguinus 60 58 The oldest recorded specimen lived to 122. HUMAN GALÁPAGOS RED SEA URCHIN Homo sapiens TORTOISE Mesocentrotus FRESHWATER Chelonoidis nigra franciscanus 79 PEARL MUSSEL 100 Margaritifera margaritifera 130 One geoduck lived to GEODUCK 168. Panopea 140 generosa BOWHEAD WHALE Balaena mysticetus 200 ROUGHEYE ROCKFISH Sebastes aleutianus ALDABRA 205 GIANT TORTOISE Aldabrachelys gigantea 255 Specimens studied were estimated to be between 272 and 512 years old. -
Siboglinidae, Annelida) from Cold Seeps Off New Zealand, and an Assessment of Its Presence in the Western Pacific Ocean Marina F
McCowin et al. Marine Biodiversity Records (2019) 12:10 https://doi.org/10.1186/s41200-019-0169-2 MARINERECORD Open Access A new record of Lamellibrachia columna (Siboglinidae, Annelida) from cold seeps off New Zealand, and an assessment of its presence in the western Pacific Ocean Marina F. McCowin1*, Ashley A. Rowden2 and Greg W. Rouse1 Abstract Lamellibrachia columna Southward was originally described from hydrothermal vents of the Lau Basin, between Fiji and Tonga. This study utilizes phylogenetic and morphological analyses to confirm the collection of Lamellibrachia columna from cold seeps on the Hikurangi Margin off New Zealand, thereby extending its geographic range southward by approximately 1900 km. We also propose, based on molecular evidence, that specimens previously reported from vents in the Nankai Trough, Japan and seeps off southern and eastern Japan are L. columna. Furthermore, we suggest that Lamellibrachia sagami Kobayashi et al. described from cold seeps off southern and eastern Japan is a junior synonym of Lamellibrachia columna. Our work confirms that L. columna is found at two types of chemosynthetic habitat over a wide geographic range in the western Pacific Ocean. Keywords: Vestimentifera, Deep sea, Pacific Ocean, Phylogeny, Synonymy Background to be described from the southwestern Pacific, at 1870 m Members of Vestimentifera (originally introduced by in an area of diffuse venting at the Lau Back-arc Basin Jones (1985), and now one of four informal lineages (Southward 1991). Since its initial discovery, L. columna within Siboglinidae Caullery, 1914 [Hilário et al. 2011; has been reported at diffuse vents from the southwestern Pleijel et al. 2009]) live in chemosynthetic environments Pacific back-arc basin at Lau from 1832 to 1914 m such as hydrothermal vents (Bright and Lallier 2010; (Black et al. -
Black Spicules from a New Interstitial Opheliid Polychaete Thoracophelia Minuta Sp
www.nature.com/scientificreports OPEN Black spicules from a new interstitial opheliid polychaete Thoracophelia minuta sp. nov. (Annelida: Opheliidae) Naoto Jimi1*, Shinta Fujimoto2, Mami Takehara1 & Satoshi Imura1,3 The phylum Annelida exhibits high morphological diversity coupled with its extensive ecological diversity, and the process of its evolution has been an attractive research subject for many researchers. Its representatives are also extensively studied in felds of ecology and developmental biology and important in many other biology related disciplines. The study of biomineralisation is one of them. Some annelid groups are well known to form calcifed tubes but other forms of biomineralisation are also known. Herein, we report a new interstitial annelid species with black spicules, Thoracophelia minuta sp. nov., from Yoichi, Hokkaido, Japan. Spicules are minute calcium carbonate inclusions found across the body and in this new species, numerous black rod-like inclusions of calcium-rich composition are distributed in the coelomic cavity. The new species can be distinguished from other known species of the genus by these conspicuous spicules, shape of branchiae and body formula. Further, the new species’ body size is apparently smaller than its congeners. Based on our molecular phylogenetic analysis using 18S and 28S sequences, we discuss the evolutionary signifcance of the new species’ spicules and also the species’ progenetic origin. Annelida is one of the most ecologically and morphologically diverse group of animals known from both marine and terrestrial environments. Several groups are highly specialised with distinct ecological niches such as intersti- tial, parasitic, pelagic, or chemosynthetic zones 1. Like many other animal phyla 2–6, annelids are known to produce biominerals2. -
Deep-Sea Whale Fall Fauna from the Atlantic Resembles That of the Pacific Ocean Received: 03 August 2015 Paulo Y
www.nature.com/scientificreports OPEN Deep-sea whale fall fauna from the Atlantic resembles that of the Pacific Ocean Received: 03 August 2015 Paulo Y. G. Sumida1, Joan M. Alfaro-Lucas1, Mauricio Shimabukuro1, Hiroshi Kitazato2, Accepted: 08 February 2016 Jose A. A. Perez3, Abilio Soares-Gomes4, Takashi Toyofuku2, Andre O. S. Lima3, Koichi Ara5 & Published: 24 February 2016 Yoshihiro Fujiwara2 Whale carcasses create remarkable habitats in the deep-sea by producing concentrated sources of organic matter for a food-deprived biota as well as places of evolutionary novelty and biodiversity. Although many of the faunal patterns on whale falls have already been described, the biogeography of these communities is still poorly known especially from basins other than the NE Pacific Ocean. The present work describes the community composition of the deepest natural whale carcass described to date found at 4204 m depth on Southwest Atlantic Ocean with manned submersible Shinkai 6500. This is the first record of a natural whale fall in the deep Atlantic Ocean. The skeleton belonged to an Antarctic Minke whale composed of only nine caudal vertebrae, whose degradation state suggests it was on the bottom for 5–10 years. The fauna consisted mainly of galatheid crabs, a new species of the snail Rubyspira and polychaete worms, including a new Osedax species. Most of the 41 species found in the carcass are new to science, with several genera shared with NE Pacific whale falls and vent and seep ecosystems. This similarity suggests the whale-fall fauna is widespread and has dispersed in a stepping stone fashion, deeply influencing its evolutionary history.