Framework for the National Harmful Algal Bloom Observing Network: a Workshop Report
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University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
The Toxic Dinoflagellate Alexandrium Minutum Impairs the Performance Of
The toxic dinoflagellate Alexandrium minutum impairs the performance of oyster embryos and larvae Justine Castrec, Helene Hegaret, Matthias Huber, Jacqueline Le Grand, Arnaud Huvet, Kevin Tallec, Myrina Boulais, Philippe Soudant, Caroline Fabioux To cite this version: Justine Castrec, Helene Hegaret, Matthias Huber, Jacqueline Le Grand, Arnaud Huvet, et al.. The toxic dinoflagellate Alexandrium minutum impairs the performance of oyster embryos and larvae. Harmful Algae, Elsevier, 2020, 92, pp.101744. 10.1016/j.hal.2020.101744. hal-02879884 HAL Id: hal-02879884 https://hal.archives-ouvertes.fr/hal-02879884 Submitted on 24 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 The toxic dinoflagellate Alexandrium minutum impairs the performance of oyster 2 embryos and larvae 3 Justine Castrec1, Hélène Hégaret1, Matthias Huber2, Jacqueline Le Grand2, Arnaud Huvet2, 4 Kevin Tallec2, Myrina Boulais1, Philippe Soudant1, and Caroline Fabioux1. 5 1 Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzane, France 6 2 Ifremer, Univ Brest, CNRS, IRD, LEMAR, F-29280 Plouzane, France 7 * Corresponding author: [email protected] 8 Abstract 9 The dinoflagellate genus Alexandrium comprises species that produce highly potent 10 neurotoxins known as paralytic shellfish toxins (PST), and bioactive extracellular compounds 11 (BEC) of unknown structure and ecological significance. -
Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
Recent Dinoflagellate Cysts from the Chesapeake Estuary (Maryland and Virginia, U.S.A.): Taxonomy and Ecological Preferences
Recent dinoflagellate cysts from the Chesapeake estuary (Maryland and Virginia, U.S.A.): taxonomy and ecological preferences. Tycho Van Hauwaert Academic year 2015–2016 Master’s dissertation submitted in partial fulfillment of the requirements for the degree of Master in Science in Geology Promotor: Prof. Dr. S. Louwye Co-promotor: Dr. K. Mertens Tutor: P. Gurdebeke Jury: Dr. T. Verleye, Dr. E. Verleyen Picture on the cover An exceptionally dense bloom of Alexandrium monilatum was observed in lower Chesapeake Bay along the north shore of the York River between Sarah's Creek and the Perrin River on 17 August 2015. Credit: W. Vogelbein/VIMS ii ACKNOWLEDGEMENTS First of all I want to thank my promoters, Prof. Dr. S. Louwye and Dr. K. Mertens. They introduced me into the wonderful world of dinoflagellates and the dinocysts due to the course Advanced Micropaleontology. I did not have hesitated long to choose a subject within the research unit of paleontology. Thank you for the proofreading, help with identification and many discussions. A special mention for Pieter Gurdebeke. This appreciation you can imagine as a 22-minutes standing ovation for the small talks and jokes only! If you include the assistance in the thesis, I would not dare to calculate the time of applause. I remember when we were discussing the subject during the fieldtrip to the Alps in September. We have come a long way and I am pleased with the result. Thank you very much for helping me with the preparation of slides, identification of dinocysts, some computer programs, proofreading of the different chapters and many more! When I am back from my trip to Canada, I would like to discuss it with a (small) bottle of beer. -
Morphology, Molecular Phylogeny and Toxinology of Coolia And
Botanica Marina 2019; 62(2): 125–140 Maria Cristina de Queiroz Mendes*, José Marcos de Castro Nunes, Santiago Fraga, Francisco Rodríguez, José Mariano Franco, Pilar Riobó, Suema Branco and Mariângela Menezes Morphology, molecular phylogeny and toxinology of Coolia and Prorocentrum strains isolated from the tropical South Western Atlantic Ocean https://doi.org/10.1515/bot-2018-0053 P. emarginatum by mass spectrometry analyses. However, Received 19 May, 2018; accepted 14 February, 2019; online first hemolytic assays in P. emarginatum and both Coolia strains 13 March, 2019 in this study showed positive results. Abstract: The morphology, molecular phylogeny and toxi- Keywords: Coolia malayensis; Coolia tropicalis; hemolytic nology of two Coolia and one Prorocentrum dinoflagellate assay; LC-HRMS; Prorocentrum emarginatum. strains from Brazil were characterized. They matched with Coolia malayensis and Coolia tropicalis morphotypes, while the Prorocentrum strain fitted well with the morphology of Prorocentrum emarginatum. Complementary identification Introduction by molecular analyses was carried out based on LSU and ITS-5.8S rDNA. Phylogenetic analyses of Coolia strains (D1/ Epibenthic dinoflagellate communities harbor potentially D2 region, LSU rDNA), showed that C. malayensis (strain harmful species that attracted great interest in the last UFBA044) segregated together with sequences of this spe- decades due to their apparent expansion from tropical/ cies from other parts of the world, but diverged earlier in subtropical areas to temperate -
Protistology an International Journal Vol
Protistology An International Journal Vol. 10, Number 2, 2016 ___________________________________________________________________________________ CONTENTS INTERNATIONAL SCIENTIFIC FORUM «PROTIST–2016» Yuri Mazei (Vice-Chairman) Welcome Address 2 Organizing Committee 3 Organizers and Sponsors 4 Abstracts 5 Author Index 94 Forum “PROTIST-2016” June 6–10, 2016 Moscow, Russia Website: http://onlinereg.ru/protist-2016 WELCOME ADDRESS Dear colleagues! Republic) entitled “Diplonemids – new kids on the block”. The third lecture will be given by Alexey The Forum “PROTIST–2016” aims at gathering Smirnov (Saint Petersburg State University, Russia): the researchers in all protistological fields, from “Phylogeny, diversity, and evolution of Amoebozoa: molecular biology to ecology, to stimulate cross- new findings and new problems”. Then Sandra disciplinary interactions and establish long-term Baldauf (Uppsala University, Sweden) will make a international scientific cooperation. The conference plenary presentation “The search for the eukaryote will cover a wide range of fundamental and applied root, now you see it now you don’t”, and the fifth topics in Protistology, with the major focus on plenary lecture “Protist-based methods for assessing evolution and phylogeny, taxonomy, systematics and marine water quality” will be made by Alan Warren DNA barcoding, genomics and molecular biology, (Natural History Museum, United Kingdom). cell biology, organismal biology, parasitology, diversity and biogeography, ecology of soil and There will be two symposia sponsored by ISoP: aquatic protists, bioindicators and palaeoecology. “Integrative co-evolution between mitochondria and their hosts” organized by Sergio A. Muñoz- The Forum is organized jointly by the International Gómez, Claudio H. Slamovits, and Andrew J. Society of Protistologists (ISoP), International Roger, and “Protists of Marine Sediments” orga- Society for Evolutionary Protistology (ISEP), nized by Jun Gong and Virginia Edgcomb. -
PERFECTION, WRETCHED, NORMAL, and NOWHERE: a REGIONAL GEOGRAPHY of AMERICAN TELEVISION SETTINGS by G. Scott Campbell Submitted T
PERFECTION, WRETCHED, NORMAL, AND NOWHERE: A REGIONAL GEOGRAPHY OF AMERICAN TELEVISION SETTINGS BY G. Scott Campbell Submitted to the graduate degree program in Geography and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. ______________________________ Chairperson Committee members* _____________________________* _____________________________* _____________________________* _____________________________* Date defended ___________________ The Dissertation Committee for G. Scott Campbell certifies that this is the approved version of the following dissertation: PERFECTION, WRETCHED, NORMAL, AND NOWHERE: A REGIONAL GEOGRAPHY OF AMERICAN TELEVISION SETTINGS Committee: Chairperson* Date approved: ii ABSTRACT Drawing inspiration from numerous place image studies in geography and other social sciences, this dissertation examines the senses of place and regional identity shaped by more than seven hundred American television series that aired from 1947 to 2007. Each state‘s relative share of these programs is described. The geographic themes, patterns, and images from these programs are analyzed, with an emphasis on identity in five American regions: the Mid-Atlantic, New England, the Midwest, the South, and the West. The dissertation concludes with a comparison of television‘s senses of place to those described in previous studies of regional identity. iii For Sue iv CONTENTS List of Tables vi Acknowledgments vii 1. Introduction 1 2. The Mid-Atlantic 28 3. New England 137 4. The Midwest, Part 1: The Great Lakes States 226 5. The Midwest, Part 2: The Trans-Mississippi Midwest 378 6. The South 450 7. The West 527 8. Conclusion 629 Bibliography 664 v LIST OF TABLES 1. Television and Population Shares 25 2. -
Poisonous Mushrooms
POISONOUS MUSHROOMS DR. SURANJANA SARKAR ASSISTANT PROFESSOR IN BOTANY, SURENDRANATH COLLEGE, KOLKATA Dr. Suranjana Sarkar, SNC INTRODUCTION It was difficult not to since eating wild mushrooms and mushroom poisoning seem to be closely related subjects. This is a rather important topic since mushrooms have apparently been gathered for eating throughout the world, for thousands of years, and it is also likely that during that time many people became ill or died when they inadvertently consumed poisonous mushrooms. Because some mushrooms were known to cause death when consumed, they were also known to be used by assassins. Dr. Suranjana Sarkar, SNC Used as Poison in Assassinations and Murders The most famous of all planned murders was that of Emperor Claudius by his fourth wife, Agrippina, The Younger (also his niece!). The story behind this assassination, as well as the political intrigue that was present during this period of the Roman Empire would have made a great mini series or soap opera. Claudius became emperor, in 41 A.D., following the assassination of his nephew Caligula, and married Agrippina, his fourth wife, after disposing of Messalina, his third wife, for adultery. Agrippina came into the marriage with Nero, a son from a previous marriage and wanted him to follow Claudius as emperor. Agrippina persuaded him to adopt her son so that Nero would be in line to become emperor. Once Nero was adopted, Agrippina plotted to kill Claudius, which involved a number of people. Although ClaudiusDr. Suranjana Sarkar,had SNCa son, Brittanicus, by Messalina, and should have succeeded him as emperor, Claudius shielded him from the responsibilities as heir to the throne and promoted Nero as his successor. -
Clio 2019 Was Funded in Part by the College of Arts & Letters’ Student- Faculty Collaboration Grant
Clio California State University, Sacramento Student History Journal Clio | Vol. 29, 2019 Phi Alpha Theta California State University, Sacramento Clio Volume 29, Spring 2019 The Annual Publication of Phi Alpha Theta, Rho Xi Chapter Department of History, College of Arts & Letters California State University, Sacramento Clio Editor-in-Chief Janis Pope Editorial Staff Sarah Dutcher Taylor Adam Bardaro Laurie Frazier Timothy Anderson Samuel Bein Brett Coker Emma Sullivan Jacob Jennerjohn Mathew Jones Brittany Nath Joshua Lourence Billy Febuary Shea Cooley Cuauhtemoc Morales Clio 2019 was funded in part by the College of Arts & Letters’ Student- Faculty Collaboration Grant. It was also made possible through generous support from: California State University, Sacramento Peer & Academic Resource Center College of Arts & Letters President Robert Nelson History Department Faculty Dr. Aaron J. Cohen Dr. Nikolaos Lazaridis Dr. Brendan Lindsay Dr. Mona Siegel Dr. Sherry Fields Dr. Jim Rose Dr. Jeffrey Wilson Students, Alumni, Friends, and Family Adam Bardaro Brett Coker James Wheeler Gena Rhoades Jackie Pope R. Moses Perez Cover Photo: Courtesy of Janis Pope © Clio 2019 – All rights reserved. No part of this journal may be reproduced, stored in a retrieval system, or transmitted in any form, except for the inclusion of brief quotations in a review of study, without prior permission in writing from the publishers and the student author. Copyright reverts to each author upon further publication of his or her article. Department of History, Tahoe Hall 3080 California State University, Sacramento 6000 J Street Sacramento, CA 95819-6059 Letter from the Editor It is with great pleasure that I present the twenty-ninth volume of Clio, the award-winning, student-run history journal of California State University, Sacramento (CSUS). -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
Chesapeake Bay Harmful Algal Blooms Overview of Emerging Issues
Chesapeake Bay Harmful Algal Blooms Overview of Emerging Issues Peter Tango USGS@CBPO Chesapeake Bay Monitoring Coordinator Toxics WG meeting 2/13/2019 1990s/early 2000s: 12 Toxin-producing phytoplankton recognized for Chesapeake Bay (Marshall 1996) • Diatoms: • Amphora coffeaformis • Pseudo-nitszschia pseudodelicatissima • P. seriata, • P. multiseries (pre-1985) • Dinoflagellates: • Cochlodinium heteroblatum • Dinophysis acuminata, D. acuta, D. caudata, D. fortii, D. norvegica, • Gyrodinium aureolum • Pfiesteria piscicida • Prorocentrum minimum • Alexandrium catenella (pre-1985) • Gonyaulax polyedra ((pre-1985) • 708 total phytoplankton taxa recognized in our tidal waters (Marshall 1994) Phytoplankton diversity in Chesapeake Bay today • > 1400 species (Marshall et al. 2005) • < 2% potentially toxic • ~1% proven toxic activity N 0 10 20 30 km Chesapeake Bay and Watershed HABs: What’s new? • Diatoms: Didymo (aka Rock snot) Ecosystem disruptor (nontoxic) • Toxic dinoflagellates • Alexandrium monilatum (oyster/fish killing Rock snot CBP A. monilatum. VIMS toxins in Chesapeake Bay) • Karlodinium micrum (fish tissue dissolves) • Raphidophytes (2+ possibly toxic spp.) • Not previous described among the A. monilatum. York River, VIMS Potomac River blue-greens Sassafras River July 2003 potentially toxic plankton community September 2003, Smith Point area Photo by Connie Goulet > 1.5 million cells/ml • Cyanobacteria • Microcystis aeruginosa (Hepatotoxic) • Anabaena spp. (Neurotoxic) • Aphanizomenon (Hepato+Neurotoxic) • Cylindrospermopsis (Hepatotoxic) • 708 total phytoplankton taxa recognized in our tidal waters (Marshall 1994) • UPDATE: 1434 total phytoplankton taxa recognized (Marshall et al. 2005) Blooms: Species importances range across all seasons. We have potentially toxic plankton species. Are they actively toxic? Where, when, how often? Karlotoxin associated fish kill Bloom and crab jubilee Corsica River 2005 Toxic bloom and bird deaths: Early cyanotoxin history in the bay region • Tisdale (1931a,b) and Veldee (1931) Am. -
Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2016 Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica Sarah Pease College of William and Mary - Virginia Institute of Marine Science, [email protected] Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Aquaculture and Fisheries Commons, Ecology and Evolutionary Biology Commons, and the Marine Biology Commons Recommended Citation Pease, Sarah, "Alexandrium Monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea Virginica" (2016). Dissertations, Theses, and Masters Projects. Paper 1477068141. http://doi.org/10.21220/V5C30T This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Alexandrium monilatum in the Lower Chesapeake Bay: Sediment Cyst Distribution and Potential Health Impacts on Crassostrea virginica ______________ A Thesis Presented to The Faculty of the School of Marine Science The College of William and Mary in Virginia In Partial Fulfillment of the Requirements for the Degree of Master of Science ______________ by Sarah K. D. Pease 2016 APPROVAL SHEET This thesis is submitted in partial fulfillment of the requirements for the degree of Master of Science _________________________________ Sarah K. D. Pease Approved, by the Committee, August 2016 __________________________________ Kimberly S. Reece, Ph.D. Committee Co-Chairman/Co-Advisor __________________________________ Wolfgang K. Vogelbein, Ph.D.