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Untangling Taxonomy: a DNA Barcode Reference Library for Canadian Spiders
Molecular Ecology Resources (2016) 16, 325–341 doi: 10.1111/1755-0998.12444 Untangling taxonomy: a DNA barcode reference library for Canadian spiders GERGIN A. BLAGOEV, JEREMY R. DEWAARD, SUJEEVAN RATNASINGHAM, STEPHANIE L. DEWAARD, LIUQIONG LU, JAMES ROBERTSON, ANGELA C. TELFER and PAUL D. N. HEBERT Biodiversity Institute of Ontario, University of Guelph, Guelph, ON, Canada Abstract Approximately 1460 species of spiders have been reported from Canada, 3% of the global fauna. This study provides a DNA barcode reference library for 1018 of these species based upon the analysis of more than 30 000 specimens. The sequence results show a clear barcode gap in most cases with a mean intraspecific divergence of 0.78% vs. a min- imum nearest-neighbour (NN) distance averaging 7.85%. The sequences were assigned to 1359 Barcode index num- bers (BINs) with 1344 of these BINs composed of specimens belonging to a single currently recognized species. There was a perfect correspondence between BIN membership and a known species in 795 cases, while another 197 species were assigned to two or more BINs (556 in total). A few other species (26) were involved in BIN merges or in a combination of merges and splits. There was only a weak relationship between the number of specimens analysed for a species and its BIN count. However, three species were clear outliers with their specimens being placed in 11– 22 BINs. Although all BIN splits need further study to clarify the taxonomic status of the entities involved, DNA bar- codes discriminated 98% of the 1018 species. The present survey conservatively revealed 16 species new to science, 52 species new to Canada and major range extensions for 426 species. -
SLAM Project
Biodiversity Data Journal 9: e69924 doi: 10.3897/BDJ.9.e69924 Data Paper SLAM Project - Long Term Ecological Study of the Impacts of Climate Change in the natural forest of Azores: I - the spiders from native forests of Terceira and Pico Islands (2012-2019) Ricardo Costa‡, Paulo A. V. Borges‡,§ ‡ cE3c – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores, Rua Capitão João d’Ávila, São Pedro, 9700-042, Angra do Heroismo, Azores, Portugal § IUCN SSC Mid-Atlantic Islands Specialist Group,, Angra do Heroísmo, Azores, Portugal Corresponding author: Paulo A. V. Borges ([email protected]) Academic editor: Pedro Cardoso Received: 09 Jun 2021 | Accepted: 05 Jul 2021 | Published: 01 Sep 2021 Citation: Costa R, Borges PAV (2021) SLAM Project - Long Term Ecological Study of the Impacts of Climate Change in the natural forest of Azores: I - the spiders from native forests of Terceira and Pico Islands (2012-2019). Biodiversity Data Journal 9: e69924. https://doi.org/10.3897/BDJ.9.e69924 Abstract Background Long-term monitoring of invertebrate communities is needed to understand the impact of key biodiversity erosion drivers (e.g. habitat fragmentation and degradation, invasive species, pollution, climatic changes) on the biodiversity of these high diverse organisms. The data we present are part of the long-term project SLAM (Long Term Ecological Study of the Impacts of Climate Change in the natural forest of Azores) that started in 2012, aiming to understand the impact of biodiversity erosion drivers on Azorean native forests (Azores, Macaronesia, Portugal). In this contribution, the design of the project, its objectives and the first available data for the spider fauna of two Islands (Pico and Terceira) are described. -
22 3 259 263 Mikhailov Alopecosa.P65
Arthropoda Selecta 22(3): 259263 © ARTHROPODA SELECTA, 2013 Tarentula Sundevall, 1833 and Alopecosa Simon, 1885: a historical account (Aranei: Lycosidae) Tarentula Sundevall, 1833 è Alopecosa Simon, 1885: èñòîðè÷åñêèé îáçîð (Aranei: Lycosidae) K.G. Mikhailov Ê.Ã. Ìèõàéëîâ Zoological Museum MGU, Bolshaya Nikitskaya Str. 6, Moscow 125009 Russia. Çîîëîãè÷åñêèé ìóçåé ÌÃÓ, óë. Áîëüøàÿ Íèêèòñêàÿ, 6, Ìîñêâà 125009 Ðîññèÿ. KEY WORDS: Tarentula, Alopecosa, nomenclature, synonymy, spiders, Lycosidae. ÊËÞ×ÅÂÛÅ ÑËÎÂÀ: Tarentula, Alopecosa, íîìåíêëàòóðà, ñèíîíèìèÿ, ïàóêè, Lycosidae. ABSTRACT. History of Tarentula Sundevall, 1833 genus Lycosa to include the following 11 species (the and Alopecosa Simon, 1885 is reviewed. Validity of current species assignments follow the catalogues by Alopecosa Simon, 1885 is supported. Reimoser [1919], Roewer [1954a], and, especially, Bonnet [1955, 1957, 1959]): ÐÅÇÞÌÅ. Äàí îáçîð èñòîðèè ðîäîâûõ íàçâà- Lycosa Fabrilis [= Alopecosa fabrilis (Clerck, 1758)], íèé Tarentula Sundevall, 1833 è Alopecosa Simon, L. trabalis [= Alopecosa inquilina (Clerck, 1758), male, 1885. Îáîñíîâàíà âàëèäíîñòü íàçâàíèÿ Alopecosa and A. trabalis (Clerck, 1758), female], Simon, 1885. L. vorax?, male [= either Alopecosa trabalis or A. trabalis and A. pulverulenta (Clerck, 1758), according Introduction to different sources], L. nivalis male [= Alopecosa aculeata (Clerck, 1758)], The nomenclatorial problems concerning the ge- L. barbipes [sp.n.] [= Alopecosa barbipes Sundevall, neric names Tarantula Fabricius, 1793, Tarentula Sun- 1833, = A. accentuata (Latreille, 1817)], devall, 1833 and Alopecosa Simon, 1885 have been L. cruciata female [sp.n.] [= Alopecosa barbipes Sun- discussed in the arachnological literature at least twice devall, 1833, = A. accentuata (Latreille, 1817)], [Charitonov, 1931; Bonnet, 1951]. However, the arach- L. pulverulenta [= Alopecosa pulverulenta], nological community seems to have overlooked or ne- L. -
Arachnida, Araneae) Inventory of Hankoniemi, Finland
Biodiversity Data Journal 5: e21010 doi: 10.3897/BDJ.5.e21010 Data Paper Standardized spider (Arachnida, Araneae) inventory of Hankoniemi, Finland Pedro Cardoso‡,§, Lea Heikkinen |, Joel Jalkanen¶, Minna Kohonen|, Matti Leponiemi|, Laura Mattila ¶, Joni Ollonen|, Jukka-Pekka Ranki|, Anni Virolainen |, Xuan Zhou|, Timo Pajunen ‡ ‡ Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland § IUCN SSC Spider & Scorpion Specialist Group, Helsinki, Finland | Department of Biosciences, University of Helsinki, Helsinki, Finland ¶ Department of Environmental Sciences, University of Helsinki, Helsinki, Finland Corresponding author: Pedro Cardoso (pedro.cardoso@helsinki.fi) Academic editor: Jeremy Miller Received: 15 Sep 2017 | Accepted: 14 Dec 2017 | Published: 18 Dec 2017 Citation: Cardoso P, Heikkinen L, Jalkanen J, Kohonen M, Leponiemi M, Mattila L, Ollonen J, Ranki J, Virolainen A, Zhou X, Pajunen T (2017) Standardized spider (Arachnida, Araneae) inventory of Hankoniemi, Finland. Biodiversity Data Journal 5: e21010. https://doi.org/10.3897/BDJ.5.e21010 Abstract Background During a field course on spider taxonomy and ecology at the University of Helsinki, the authors had the opportunity to sample four plots with a dual objective of both teaching on field methods, spider identification and behaviour and uncovering the spider diversity patterns found in the southern coastal forests of Hankoniemi, Finland. As an ultimate goal, this field course intended to contribute to a global project that intends to uncover spider diversity patterns worldwide. With that purpose, a set of standardised methods and procedures was followed that allow the comparability of obtained data with numerous other projects being conducted across all continents. New information A total of 104 species and 1997 adults was collected. -
Taxonomic Notes on Agroeca (Araneae, Liocranidae)
Arachnol. Mitt. 37: 27-30 Nürnberg, Juli 2009 Taxonomic notes on Agroeca (Araneae, Liocranidae) Torbjörn Kronestedt Abstract: Agroeca gaunitzi Tullgren, 1952 is stated here to be a junior synonym of A. proxima (O. P.-Cambridge, 1871). The illustrations of the male palp attributed to A. proxima in papers by Tullgren of 1946 and 1952 in fact show A. inopina O. P.-Cambridge, 1886. The record of A. inopina from Finland, quite outside its known distribution range, was based on a misidentification. It is argued that the type species of the genus Agroeca Westring, 1861 should be A. proxima (O. P.-Cambridge, 1871), not A. brunnea (Blackwall, 1833) as currently applied. Protagroeca Lohmander, 1944 is placed as an objective synonym of Agroeca Westring, 1861. Key words: Agroeca gaunitzi, synonyms, type species On the identity of Agroeca gaunitzi Tullgren, 1952 Because Agroeca gaunitzi still appears as a valid Agroeca gaunitzi was described based on a single nominal species (HELSDINGEN 2009, PLATNICK male from the southern part of Swedish Lapland 2009), a re-study of the holotype was undertaken in (TULLGREN 1952). No additional specimens have order to clarify its identity. As a result, the following since been assigned to this nominal species and it conclusions were reached: was not mentioned in the most recent taxonomical revision of the genus (GRIMM 1986) nor in the 1. The holotype of Agroeca gaunitzi is a male of latest treatment of the family in Sweden (ALM- Agroeca proxima, thus making the former a junior QUIST 2006). synonym, syn. n. According to the original description, A. gau- 2. -
Higher-Level Phylogenetics of Linyphiid Spiders (Araneae, Linyphiidae) Based on Morphological and Molecular Evidence
Cladistics Cladistics 25 (2009) 231–262 10.1111/j.1096-0031.2009.00249.x Higher-level phylogenetics of linyphiid spiders (Araneae, Linyphiidae) based on morphological and molecular evidence Miquel A. Arnedoa,*, Gustavo Hormigab and Nikolaj Scharff c aDepartament Biologia Animal, Universitat de Barcelona, Av. Diagonal 645, E-8028 Barcelona, Spain; bDepartment of Biological Sciences, The George Washington University, Washington, DC 20052, USA; cDepartment of Entomology, Natural History Museum of Denmark, Zoological Museum, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark Accepted 19 November 2008 Abstract This study infers the higher-level cladistic relationships of linyphiid spiders from five genes (mitochondrial CO1, 16S; nuclear 28S, 18S, histone H3) and morphological data. In total, the character matrix includes 47 taxa: 35 linyphiids representing the currently used subfamilies of Linyphiidae (Stemonyphantinae, Mynogleninae, Erigoninae, and Linyphiinae (Micronetini plus Linyphiini)) and 12 outgroup species representing nine araneoid families (Pimoidae, Theridiidae, Nesticidae, Synotaxidae, Cyatholipidae, Mysmenidae, Theridiosomatidae, Tetragnathidae, and Araneidae). The morphological characters include those used in recent studies of linyphiid phylogenetics, covering both genitalic and somatic morphology. Different sequence alignments and analytical methods produce different cladistic hypotheses. Lack of congruence among different analyses is, in part, due to the shifting placement of Labulla, Pityohyphantes, -
Effects of Climate Change on Arctic Arthropod Assemblages and Distribution Phd Thesis
Effects of climate change on Arctic arthropod assemblages and distribution PhD thesis Rikke Reisner Hansen Academic advisors: Main supervisor Toke Thomas Høye and co-supervisor Signe Normand Submitted 29/08/2016 Data sheet Title: Effects of climate change on Arctic arthropod assemblages and distribution Author University: Aarhus University Publisher: Aarhus University – Denmark URL: www.au.dk Supervisors: Assessment committee: Arctic arthropods, climate change, community composition, distribution, diversity, life history traits, monitoring, species richness, spatial variation, temporal variation Date of publication: August 2016 Please cite as: Hansen, R. R. (2016) Effects of climate change on Arctic arthropod assemblages and distribution. PhD thesis, Aarhus University, Denmark, 144 pp. Keywords: Number of pages: 144 PREFACE………………………………………………………………………………………..5 LIST OF PAPERS……………………………………………………………………………….6 ACKNOWLEDGEMENTS……………………………………………………………………...7 SUMMARY……………………………………………………………………………………...8 RESUMÉ (Danish summary)…………………………………………………………………....9 SYNOPSIS……………………………………………………………………………………....10 Introduction……………………………………………………………………………………...10 Study sites and approaches……………………………………………………………………...11 Arctic arthropod community composition…………………………………………………….....13 Potential climate change effects on arthropod composition…………………………………….15 Arctic arthropod responses to climate change…………………………………………………..16 Future recommendations and perspectives……………………………………………………...20 References………………………………………………………………………………………..21 PAPER I: High spatial -
Spiders (Araneae) of Churchill, Manitoba: DNA Barcodes And
Blagoev et al. BMC Ecology 2013, 13:44 http://www.biomedcentral.com/1472-6785/13/44 RESEARCH ARTICLE Open Access Spiders (Araneae) of Churchill, Manitoba: DNA barcodes and morphology reveal high species diversity and new Canadian records Gergin A Blagoev1*, Nadya I Nikolova1, Crystal N Sobel1, Paul DN Hebert1,2 and Sarah J Adamowicz1,2 Abstract Background: Arctic ecosystems, especially those near transition zones, are expected to be strongly impacted by climate change. Because it is positioned on the ecotone between tundra and boreal forest, the Churchill area is a strategic locality for the analysis of shifts in faunal composition. This fact has motivated the effort to develop a comprehensive biodiversity inventory for the Churchill region by coupling DNA barcoding with morphological studies. The present study represents one element of this effort; it focuses on analysis of the spider fauna at Churchill. Results: 198 species were detected among 2704 spiders analyzed, tripling the count for the Churchill region. Estimates of overall diversity suggest that another 10–20 species await detection. Most species displayed little intraspecific sequence variation (maximum <1%) in the barcode region of the cytochrome c oxidase subunit I (COI) gene, but four species showed considerably higher values (maximum = 4.1-6.2%), suggesting cryptic species. All recognized species possessed a distinct haplotype array at COI with nearest-neighbour interspecific distances averaging 8.57%. Three species new to Canada were detected: Robertus lyrifer (Theridiidae), Baryphyma trifrons (Linyphiidae), and Satilatlas monticola (Linyphiidae). The first two species may represent human-mediated introductions linked to the port in Churchill, but the other species represents a range extension from the USA. -
Distribution of Spiders in Coastal Grey Dunes
kaft_def 7/8/04 11:22 AM Pagina 1 SPATIAL PATTERNS AND EVOLUTIONARY D ISTRIBUTION OF SPIDERS IN COASTAL GREY DUNES Distribution of spiders in coastal grey dunes SPATIAL PATTERNS AND EVOLUTIONARY- ECOLOGICAL IMPORTANCE OF DISPERSAL - ECOLOGICAL IMPORTANCE OF DISPERSAL Dries Bonte Dispersal is crucial in structuring species distribution, population structure and species ranges at large geographical scales or within local patchily distributed populations. The knowledge of dispersal evolution, motivation, its effect on metapopulation dynamics and species distribution at multiple scales is poorly understood and many questions remain unsolved or require empirical verification. In this thesis we contribute to the knowledge of dispersal, by studying both ecological and evolutionary aspects of spider dispersal in fragmented grey dunes. Studies were performed at the individual, population and assemblage level and indicate that behavioural traits narrowly linked to dispersal, con- siderably show [adaptive] variation in function of habitat quality and geometry. Dispersal also determines spider distribution patterns and metapopulation dynamics. Consequently, our results stress the need to integrate knowledge on behavioural ecology within the study of ecological landscapes. / Promotor: Prof. Dr. Eckhart Kuijken [Ghent University & Institute of Nature Dries Bonte Conservation] Co-promotor: Prf. Dr. Jean-Pierre Maelfait [Ghent University & Institute of Nature Conservation] and Prof. Dr. Luc lens [Ghent University] Date of public defence: 6 February 2004 [Ghent University] Universiteit Gent Faculteit Wetenschappen Academiejaar 2003-2004 Distribution of spiders in coastal grey dunes: spatial patterns and evolutionary-ecological importance of dispersal Verspreiding van spinnen in grijze kustduinen: ruimtelijke patronen en evolutionair-ecologisch belang van dispersie door Dries Bonte Thesis submitted in fulfilment of the requirements for the degree of Doctor [Ph.D.] in Sciences Proefschrift voorgedragen tot het bekomen van de graad van Doctor in de Wetenschappen Promotor: Prof. -
Spider Biodiversity Patterns and Their Conservation in the Azorean
Systematics and Biodiversity 6 (2): 249–282 Issued 6 June 2008 doi:10.1017/S1477200008002648 Printed in the United Kingdom C The Natural History Museum ∗ Paulo A.V. Borges1 & Joerg Wunderlich2 Spider biodiversity patterns and their 1Azorean Biodiversity Group, Departamento de Ciˆencias conservation in the Azorean archipelago, Agr´arias, CITA-A, Universidade dos Ac¸ores. Campus de Angra, with descriptions of new species Terra-Ch˜a; Angra do Hero´ısmo – 9700-851 – Terceira (Ac¸ores); Portugal. Email: [email protected] 2Oberer H¨auselbergweg 24, Abstract In this contribution, we report on patterns of spider species diversity of 69493 Hirschberg, Germany. the Azores, based on recently standardised sampling protocols in different hab- Email: joergwunderlich@ t-online.de itats of this geologically young and isolated volcanic archipelago. A total of 122 species is investigated, including eight new species, eight new records for the submitted December 2005 Azorean islands and 61 previously known species, with 131 new records for indi- accepted November 2006 vidual islands. Biodiversity patterns are investigated, namely patterns of range size distribution for endemics and non-endemics, habitat distribution patterns, island similarity in species composition and the estimation of species richness for the Azores. Newly described species are: Oonopidae – Orchestina furcillata Wunderlich; Linyphiidae: Linyphiinae – Porrhomma borgesi Wunderlich; Turinyphia cavernicola Wunderlich; Linyphiidae: Micronetinae – Agyneta depigmentata Wunderlich; Linyph- iidae: -
Rvk-Diss Digi
University of Groningen Of dwarves and giants van Klink, Roel IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2014 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): van Klink, R. (2014). Of dwarves and giants: How large herbivores shape arthropod communities on salt marshes. s.n. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 01-10-2021 Of Dwarves and Giants How large herbivores shape arthropod communities on salt marshes Roel van Klink This PhD-project was carried out at the Community and Conservation Ecology group, which is part of the Centre for Ecological and Environmental Studies of the University of Groningen, The Netherlands. -
196 Arachnology (2019)18 (3), 196–212 a Revised Checklist of the Spiders of Great Britain Methods and Ireland Selection Criteria and Lists
196 Arachnology (2019)18 (3), 196–212 A revised checklist of the spiders of Great Britain Methods and Ireland Selection criteria and lists Alastair Lavery The checklist has two main sections; List A contains all Burach, Carnbo, species proved or suspected to be established and List B Kinross, KY13 0NX species recorded only in specific circumstances. email: [email protected] The criterion for inclusion in list A is evidence that self- sustaining populations of the species are established within Great Britain and Ireland. This is taken to include records Abstract from the same site over a number of years or from a number A revised checklist of spider species found in Great Britain and of sites. Species not recorded after 1919, one hundred years Ireland is presented together with their national distributions, before the publication of this list, are not included, though national and international conservation statuses and syn- this has not been applied strictly for Irish species because of onymies. The list allows users to access the sources most often substantially lower recording levels. used in studying spiders on the archipelago. The list does not differentiate between species naturally Keywords: Araneae • Europe occurring and those that have established with human assis- tance; in practice this can be very difficult to determine. Introduction List A: species established in natural or semi-natural A checklist can have multiple purposes. Its primary pur- habitats pose is to provide an up-to-date list of the species found in the geographical area and, as in this case, to major divisions The main species list, List A1, includes all species found within that area.