Victorin, the Host-Selective Cyclic Peptide Toxin from the Oat Pathogen Cochliobolus Victoriae, Is Ribosomally En- Coded,” by Simon C
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Molecular Identification of Fungi
Molecular Identification of Fungi Youssuf Gherbawy l Kerstin Voigt Editors Molecular Identification of Fungi Editors Prof. Dr. Youssuf Gherbawy Dr. Kerstin Voigt South Valley University University of Jena Faculty of Science School of Biology and Pharmacy Department of Botany Institute of Microbiology 83523 Qena, Egypt Neugasse 25 [email protected] 07743 Jena, Germany [email protected] ISBN 978-3-642-05041-1 e-ISBN 978-3-642-05042-8 DOI 10.1007/978-3-642-05042-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2009938949 # Springer-Verlag Berlin Heidelberg 2010 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover design: WMXDesign GmbH, Heidelberg, Germany, kindly supported by ‘leopardy.com’ Printed on acid-free paper Springer is part of Springer Science+Business Media (www.springer.com) Dedicated to Prof. Lajos Ferenczy (1930–2004) microbiologist, mycologist and member of the Hungarian Academy of Sciences, one of the most outstanding Hungarian biologists of the twentieth century Preface Fungi comprise a vast variety of microorganisms and are numerically among the most abundant eukaryotes on Earth’s biosphere. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Isolation and Characterization of the Mating-Type Locus of the Barley
855 Isolation and characterization of the mating-type locus of the barley pathogen Pyrenophora teres and frequencies of mating-type idiomorphs within and among fungal populations collected from barley landraces Domenico Rau, Frank J. Maier, Roberto Papa, Anthony H.D. Brown, Virgilio Balmas, Eva Saba, Wilhelm Schaefer, and Giovanna Attene Abstract: Pyrenophora teres f. sp. teres mating-type genes (MAT-1: 1190 bp; MAT-2: 1055 bp) have been identified. Their predicted proteins, measuring 379 and 333 amino acids, respectively, are similar to those of other Pleosporales, such as Pleospora sp., Cochliobolus sp., Alternaria alternata, Leptosphaeria maculans, and Phaeosphaeria nodorum. The structure of the MAT locus is discussed in comparison with those of other fungi. A mating-type PCR assay has also been developed; with this assay we have analyzed 150 isolates that were collected from 6 Sardinian barley land- race populations. Of these, 68 were P. t e re s f. sp. teres (net form; NF) and 82 were P. t e re s f. sp. maculata (spot form; SF). Within each mating type, the NF and SF amplification products were of the same length and were highly similar in sequence. The 2 mating types were present in both the NF and the SF populations at the field level, indicating that they have all maintained the potential for sexual reproduction. Despite the 2 forms being sympatric in 5 fields, no in- termediate isolates were detected with amplified fragment length polymorphism (AFLP) analysis. These results suggest that the 2 forms are genetically isolated under the field conditions. In all of the samples of P. -
Functional Characterization of Polyketide-Derived
FUNCTIONAL CHARACTERIZATION OF POLYKETIDE-DERIVED SECONDARY METABOLITES SOLANAPYRONES PRODUCED BY THE CHICKPEA BLIGHT PATHOGEN, ASCOCHYTA RABIEI: GENETICS AND CHEMICAL ECOLOGY By WONYONG KIM A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY WASHINGTON STATE UNIVERSITY Department of Plant Pathology AUGUST 2015 To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of WONYONG KIM find it satisfactory and recommend that it be accepted ___________________________________ Weidong Chen, Ph.D., Chair ___________________________________ Tobin L. Peever, Ph.D. ___________________________________ George J. Vandemark, Ph.D. ___________________________________ Lee A. Hadwiger, Ph.D. ___________________________________ Ming Xian, Ph.D. ii ACKNOWLEDGEMENTS I take this opportunity to thank my major advisor, Dr. Weidong Chen. I have learned a tremendous amount from him in framing hypothesis and critical thinking in science. He gave me every possible opportunity to attend conferences to present my research and interact with scientific communities. I would also like to thank my committee members Drs. Tobin L. Peever, George J. Va ndemark, Lee A. Hadwiger and Ming Xian for their open-door policy when questions arose and for giving me ideas and suggestions that helped develop this dissertation research. I am very fortunate to have such a nice group of committee members who are experts each in their own fields such as Systematics, Genetics, Molecular Biology and Chemistry. Without their expertise and helps the research presented in this dissertation could not have been carried out. I thank to Drs. Jeong-Jin Park and Chung-Min Park for long term collaboration during my doctoral study and being as good friends. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Alternaria Alternata of CITRUS
MOLECULAR INTERPLAY AMONG THE REDOX-RESPONSIVE REGULATOR AaAP1, THE TWO-COMPONENT HISTIDINE KINASE AND THE MITOGEN-ACTIVATED PROTEIN (MAP) KINASES IN Alternaria alternata OF CITRUS By CHING-HSUAN LIN A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2010 1 © 2010 Ching-Hsuan Lin 2 To my wife, Ms. Hui-Yu Hsieh, and my sisters, Ms. Mei-Ling Lin and Mei-Jyun Lin for their thorough support and encouragement 3 ACKNOWLEDGMENTS This research project would not have been possible without the support of many people. I would like to express my gratitude to my supervisor, Dr. Kuang-Ren Chung, whose expertise, understanding, and patience, added considerably to my graduate experience. I appreciate his invaluable vast knowledge and skills in many areas and his assistance in my writing. I would like to thank the other members of my committee, Dr. Fredy Altpeter, Dr. Jeffrey A. Rollins, and Dr. Jeffrey B. Jones for their helpful assistance and critical evaluation of this dissertation. Special thanks also to all my graduate friends: Andrew Funk, Franklin Behlau, Qiang Chen, Xiaoen Huang, and Chang-Hua Huang, Sarsha, and Carol. They each helped make my time in the PhD program more fun and interesting. I also want to thank our Lab members, Siwy Ling Yang, Nan-Yi, Wang and Mr. Lenny Venderpool for their assistance to some aspects of my research project. Most importantly, I thank my family for the support they provided me through my entire life and in particular, I must acknowledge my wife without her endless love and encouragement I would not have finished this thesis. -
Bzcon1, a SANT/Myb-Type Gene Involved in the Conidiation of Cochliobolus
G3: Genes|Genomes|Genetics Early Online, published on June 3, 2014 as doi:10.1534/g3.114.012286 1 BZcon1, a SANT/Myb-type gene involved in the conidiation of Cochliobolus 2 carbonum 3 Jun-xiang Zhang,* Yi-xin Wu,§ Honhing Ho,† Hao Zhang,§ Peng-fei He,§ Yue-qiu He* 4 5 *Faculty of Plant Protection, Yunnan Agricultural University, Kunming 650201, 6 Yunnan, China 7 §Faculty of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming 8 650201, Yunnan, China 9 †Department of Biology, State University of New York, New Paltz, NY 12561, USA 1 © The Author(s) 2013. Published by the Genetics Society of America. 10 Zhang et al. BZcon1 involved in fungal conidiation 11 12 Keywords: Bipolaris zeicola; Conidia; Sporulation; Clone; Northern Leaf Spot 13 14 Corresponding to 15 Yue-qiu He 16 Faculty of Plant Protection, Yunnan Agricultural University, Kunming 650201, 17 Yunnan, China 18 Phone: 86-0871-65228221 19 Fax: 86-0871-65228532 20 Email: [email protected] 2 21 Abstract 22 A fungal pathogen Cochliobolus carbonum (anamorph, Bipolaris zeicola) causes 23 Northern Leaf Spot, leading to a ubiquitous and devastating foliar disease of corn in 24 Yunnan Province, China. Asexual spores (conidia) play a major role in both epidemics 25 and pathogenesis of Northern Leaf Spot; but the molecular mechanism of conidiation 26 in C. carbonum has remained elusive. Here, using a map-based cloning strategy, we 27 cloned a single dominant gene, designated as BZcon1 (for Bipolaris zeicola 28 conidiation), which encodes a predicted unknown protein containing 402 amino acids, 29 with two common conserved SANT/Myb domains in N-terminal. -
Objective Plant Pathology
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/305442822 Objective plant pathology Book · July 2013 CITATIONS READS 0 34,711 3 authors: Surendra Nath M. Gurivi Reddy Tamil Nadu Agricultural University Acharya N G Ranga Agricultural University 5 PUBLICATIONS 2 CITATIONS 15 PUBLICATIONS 11 CITATIONS SEE PROFILE SEE PROFILE Prabhukarthikeyan S. R ICAR - National Rice Research Institute, Cuttack 48 PUBLICATIONS 108 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Management of rice diseases View project Identification and characterization of phytoplasma View project All content following this page was uploaded by Surendra Nath on 20 July 2016. The user has requested enhancement of the downloaded file. Objective Plant Pathology (A competitive examination guide)- As per Indian examination pattern M. Gurivi Reddy, M.Sc. (Plant Pathology), TNAU, Coimbatore S.R. Prabhukarthikeyan, M.Sc (Plant Pathology), TNAU, Coimbatore R. Surendranath, M. Sc (Horticulture), TNAU, Coimbatore INDIA A.E. Publications No. 10. Sundaram Street-1, P.N.Pudur, Coimbatore-641003 2013 First Edition: 2013 © Reserved with authors, 2013 ISBN: 978-81972-22-9 Price: Rs. 120/- PREFACE The so called book Objective Plant Pathology is compiled by collecting and digesting the pertinent information published in various books and review papers to assist graduate and postgraduate students for various competitive examinations like JRF, NET, ARS conducted by ICAR. It is mainly helpful for students for getting an in-depth knowledge in plant pathology. The book combines the basic concepts and terminology in Mycology, Bacteriology, Virology and other applied aspects. -
ISSN: 0975-8585 March–April 2015 RJPBCS 6(2) Page No
ISSN: 0975-8585 Research Journal of Pharmaceutical, Biological and Chemical Sciences Review: Plant Extract a Novel for Agriculture. Tansukh Barupal* and Kanika Sharma. Microbial Research Laboratory, Department of Botany, M.L.S. University, Udaipur-313001 Rajasthan, India. ABSTRACT The rising population demand for food poses major challenges to humankind. In favor of facing this challenge humans used enormous amount of chemically synthesize fungicides to control plant diseases because of their diverse use, easiness of synthesis and extreme effectiveness. However, they are not considered as enduring solutions due to their harmful effects on human being as well as soil health so, nowadays focus is shifting in the direction of biological methods to manage plant diseases as they have no adverse consequence on humans as well as environment. The employ of botanicals / natural products for the control of plant diseases is considered as an interesting alternative way to synthetic fungicides due to their no negative impacts on the environment. The present study attempt will be made to develop the plant extract based bio-formulation for systematic control of leaf spot disease of maize caused by Curvularia lunata. Keywords: Plant extracts, Bio-formulation, Antimicrobial activity, Crop plant, Medicinal plants *Corresponding author March–April 2015 RJPBCS 6(2) Page No. 934 ISSN: 0975-8585 INTRODUCTION There are two million kinds of living organisms of which fungi constitutes a hundred thousand species [101] from this we can conclude that fungus is omnipresent. It is responsible for food spoilage, crop deterioration and many health hazards. Plant parasitic fungi cause disease in several economically important crop plants, which lead to enormous losses [131]. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Cochliobolus Heterostrophus
May 20Pathogen of the month – May 2020 a b c 50 mm d Fig. (a) Germinating conidium with appressoria (red arrows); (b) formation of an extracellular matrix around the appressorium and early formation of subcuticular hyphae; (c) subcuticular hyphal growth from a stomate (red arrowheads) and; (d) hyphal growth within the leaf ,(1934) ,(1934) mesophyll layer. Maize leaf lesions infected with C. heterostrophus were hand cut and cleared overnight in glacial acetic acid: ethanol solution. They were rinsed in water and then treated with Calcofluor White stain in (a) or Lactophenol Blue solution in (b) ,(c) and (d). Images were acquired with an Olympus BX50 and a Nikon Eclipse Ti microscopes on the Bioimaging platform, La Trobe University. Common Name: Maydis leaf blight, southern leaf blotch Disease: Southern corn leaf blight (SCLB) or leaf spot; leaf blotch Classification: K: Fungi P: Ascomycota C: Dothideomycetes O: Pleosporales F: Pleosporaceae Cochliobolus heterostrophus (anamorph, Bipolaris maydis) is a necrotophic, hetrothallic fungus which infects the leaves of Drechsler maize. The species is subdivided into three races: race O, race T and race C. Race T is the most virulent to maize plants ) carrying the Texas cytoplasmic male sterile trait due to presence of approx. 1.2 Mb of DNA encoding genes for T-toxin production. Other members of the genus include the necrotrophic corn pathogen Cochliobolus carbonum, the oat pathogen, Cochliobolus victoriae, the rice pathogen, Cochliobolus miyabeanus, the sorghum pathogen, Bipolaris sorghicola, the sugarcane pathogen, Bipolaris sacchari, and the hemibiotrophic generalized cereal and grass pathogen, Cochliobolus sativus. All species mentioned above produce host selective toxins. -
Characterization of a Cell Death Suppressing Effector Broadly Conserved Across the Fungal Kingdom Ehren Lee Whigham Iowa State University
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2013 Characterization of a cell death suppressing effector broadly conserved across the fungal kingdom Ehren Lee Whigham Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Agricultural Science Commons, Agriculture Commons, and the Plant Pathology Commons Recommended Citation Whigham, Ehren Lee, "Characterization of a cell death suppressing effector broadly conserved across the fungal kingdom" (2013). Graduate Theses and Dissertations. 13431. https://lib.dr.iastate.edu/etd/13431 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Characterization of a cell death suppressing effector broadly conserved across the fungal kingdom by Ehren L. Whigham A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Major: Plant Pathology Program of Study Committee: Roger P. Wise, Major Professor Adam Bogdanove Erik Vollbrecht Iowa State University Ames, Iowa 2013 Copyright © Ehren L. Whigham, 2013, All rights reserved. ii TABLE OF CONTENTS GLOSSARY/ABBREVIATIONS .................................................................... iii