Chapter 3 Reactions of Nucleophiles and Bases 1) Nucleophilic Substitution (A) at Sp3 (B) at Sp2 Centers (C) Aromatic Substitu
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Elimination Reactions E1, E2, E1cb and Ei
Elimination Reactions Dr. H. Ghosh Surendranath College, Kol-9 ________________________________________________ E1, E2, E1cB and Ei (pyrolytic syn eliminations); formation of alkenes and alkynes; mechanisms (with evidence), reactivity, regioselectivity (Saytzeff/Hofmann) and stereoselectivity; comparison between substitution and elimination. Substitution Reactions Elimination Reactions Elimination happens when the nucleophile attacks hydrogen instead of carbon Strong Base favor Elimination Bulky Nucleophile/Base favor Elimination High Temperature favors Elimination We know- This equation says that a reaction in which ΔS is positive is more thermodynamically favorable at higher temperature. Eliminations should therefore be favoured at high temperature Keep in Mind---- Mechanism Classification E1 Mechanism- Elimination Unimolecular E1 describes an elimination reaction (E) in which the rate-determining step is unimolecular (1) and does not involve the base. The leaving group leaves in this step, and the proton is removed in a separate second step E2 Mechanism- Elimination Bimolecular E2 describes an elimination (E) that has a bimolecular (2) rate-determining step that must involve the base. Loss of the leaving group is simultaneous with removal of the proton by the base Bulky t-butoxide—ideal for promoting E2 as it’s both bulky and a strong base (pKaH = 18). Other Organic Base used in Elimination Reaction These two bases are amidines—delocalization of one nitrogen’s lone pair on to the other, and the resulting stabilization of the protonated amidinium ion, E1 can occur only with substrates that can ionize to give relatively stable carbocations—tertiary, allylic or benzylic alkyl halides, for example. E1-Elimination Reaction not possible here The role of the leaving group Since the leaving group is involved in the rate-determining step of both E1 and E2, in general, any good leaving group will lead to a fast elimination. -
Products from Reactions of Carbon Nucleophiles and Carbon
14C synthesis strategies, Chem 315/316 / Beauchamp 1 Products from reactions of carbon nucleophiles and carbon electrophiles used in the 14C Game and our course: Carbon and hydrogen nucleophiles Ph R Ph Al H N R Li R (MgBr) P Li AlH R Cu Li Na CN RCC Na Ph 4 Li Carbon 2 H C R organolithium organolithium cyanide acetylides 2 ylid Na BH4 diisobutylaluminium lithium diisopropy- electrophiles cuprates (LAH) o reagents reagents Wittig reagents hydride (DIBAH) amide (LDA), -78 C H C Br 3 not useful not useful 2 RX coupling nitrilesalkynes not useful alkyls alkyls not useful methyl RX reaction R Br not useful not useful 2 RX coupling nitriles alkynes not useful alkyls alkyls not useful primary RX reaction R 2 RX coupling nitriles alkyls not useful E2 not useful alkyls not useful not useful reaction R Br secondary RX O 1o ROH 1o ROH 1o ROH 1o ROH not useful 1o ROH o not useful not useful 1o ROH 1 ROH ethylene oxide nitriles alkynes O o o o o o o 2 ROH 2 ROH 2 ROH 2 ROH 2o ROH 2 ROH 2 ROH not useful not useful E2, make nitriles alkynes allylic alcohols propylene oxide O o 3 ROH 3o ROH o 3o ROH o not useful o 3o ROH not useful E2, make 3 ROH 3 ROH 3 ROH allylic alcohols nitriles alkynes isobutylene oxide O o o specific methanol methanol C 1 ROH 1 ROH not used cyanohydrin 1o ROH not useful not useful in our course alkenes H H alkynes methanal O specific o enolate o o cyanohydrin o 1 ROH o C 2 ROH 2 ROH not useful 2 ROH alkenes 1 ROH not useful chemistry R H alkynes simple aldehydes O cyanohydrin o unless specific o enolate C 3 ROH 3o ROH o 2o ROH -
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1. Alkyl Halides (Haloalkane) 2. Nucleophilic Substitution Reactions (SNX, X=1 or 2) 3. Nucleophiles (Acid-Base Chemistry, pka) 4. Leaving Groups (Acid-Base Chemistry, pka) 5. Kinetics of a Nucleophilic Substitution Reaction: An SN2 Reaction 6. A Mechanism for the SN2 Reaction 7. The Stereochemistry of SN2 Reactions 8. A Mechanism for the SN1 Reaction 9. Carbocations, SN1, E1 10. Stereochemistry of SN1 Reactions 11. Factors Affecting the Rates of SN1 and SN2 Reactions 12. --Eliminations, E1 and E2 13. E2 and E1 mechanisms and product predictions In this chapter we will consider: What groups can be replaced (i.e., substituted) or eliminated The various mechanisms by which such processes occur The conditions that can promote such reactions Alkyl Halides (Haloalkane) An alkyl halide has a halogen atom bonded to an sp3-hybridized (tetrahedral) carbon atom The carbon–chlorine and carbon– bromine bonds are polarized because the halogen is more electronegative than carbon The carbon-iodine bond do not have a per- manent dipole, the bond is easily polarizable Iodine is a good leaving group due to its polarizability, i.e. its ability to stabilize a charge due to its large atomic size Generally, a carbon-halogen bond is polar with a partial positive () charge on the carbon and partial negative () charge on the halogen C X X = Cl, Br, I Different Types of Organic Halides Alkyl halides (haloalkanes) sp3-hybridized Attached to Attached to Attached -
Chemistry 0310 - Organic Chemistry 1 Chapter 6
Dr. Peter Wipf Chemistry 0310 - Organic Chemistry 1 Chapter 6. SN2 Reactions Nucleophilic substitution reactions occur when nucleophiles (electron-rich species) displace leaving groups on electrophiles (electron-poor species). The net result is the substitution of one group for another bonded to a carbon atom. Nucleophilicity is increased by a negative charge and an increase in the polarizability. The greater the size and the lower the electronegativity of an atom, the greater its polarizability. Leaving groups are stable species that can be detached with their bonding electrons from a molecule during reaction. Most good leaving groups are the conjugate bases of strong acids. Sulfonates (mesylates, tosylates, triflates, etc.) are popular leaving groups since they can be readily obtained from alcohols. Solvents also influence nucleophilicity. SN2 reactions are second-order reactions whose rates depend o the concentration of both the alkyl halide and the nucleophile. The transition state of the one-step SN2 process involves a trigonal bipyramidal carbon and results in an overall inversion of configuration. The order of reactivity of alkyl halides and alkyl sulfonates in SN2 reactions is CH3>1°>2°>3°. The activation energy, DG‡, determines the rate of a reaction: k = koexp(-DG‡/RT). The overall change in free energy, DG, determines the position of the thermodynamic equilibrium. A positive sign of DG is characteristic for an endergonic reaction, a negative DG is found for an exergonic process. The rate of a reaction can be measured and provides information about its mechanism. The reaction order is the sum of the exponents in the rate equation. Relative Leaving Group Abilities: Leaving Group Common Name krel AcO acetate 1 x 10-10 Cl chloride 0.0001 Br bromide 0.001 I iodide 0.01 O mesylate 1.00 H3C S O O O tosylate 0.70 H3C S O O O brosylate 2.62 Br S O O O nosylate 13 O2N S O O O fluorosulfate 29,000 F S O O O triflate 56,000 CF3 S O O O nonaflate 120,000 C4F9 S O O. -
Nucleophilic Aromatic Substitution
NUCLEOPHILIC AROMATIC SUBSTITUTION Ms. Prerana Sanas M.Pharm (Pharmceutical Chemistry) Asst.Professor, NCRD’s Sterling Institute of Pharmacy Nerul Navi Mumbai Nucleophilic aromatic substitution results in the substitution of a halogen X on a benzene ring by a nucleophile (:Nu– ). Aryl halides undergo a limited number of substitution reactions with strong nucleophiles. NAS occurs by two mechanisms i) Bimoleccular displacement (Addition –Elimination) ii) Benzyne Formation( Elimination –Addition) 7/5/2019 Ms.Prerana Sanas 2 Bimolecular displacement (Addition – Elimination) Aryl halides with strong electron-withdrawing groups (such as NO2) on the ortho or para positions react with nucleophiles to afford substitution products. For example, treatment of p-chloronitrobenzene with hydroxide (– OH) affords p-nitrophenol by replacement of Cl by OH. Nucleophilic aromatic substitution occurs with a variety of strong nucleophiles, including – OH, – OR, – NH2, – SR, and in some cases, neutral nucleophiles such as NH3 and RNH2 . 7/5/2019 Ms.Prerana Sanas 3 Mechanism…… The mechanism of these reactions has two steps: Step i) Addition of the nucleophile (:Nu– ) forms a resonance-stabilized carbanion with a new C – Nu bond—three resonance structures can be drawn. • Step [1] is rate-determining since the aromaticity of the benzene ring is lost. In Step ii) loss of the leaving group re-forms the aromatic ring. This step is fast because the aromaticity of the benzene ring is restored. 7/5/2019 Ms.Prerana Sanas 4 Factors affecting Bimolecular displacement Increasing the number of electron-withdrawing groups increases the reactivity of the aryl halide. Electron-withdrawing groups stabilize the intermediate carbanion, and by the Hammond postulate, lower the energy of the transition state that forms it. -
Cubane and Triptycene As Scaffolds in the Synthesis of Porphyrin Arrays
Cubane and Triptycene as Scaffolds in the Synthesis of Porphyrin Arrays Submitted by Gemma M. Locke B.A. (Mod.) Medicinal Chemistry Trinity College Dublin, Ireland A thesis submitted to the University of Dublin, Trinity College for the degree of Doctor of Philosophy Under the Supervision of Prof. Dr. Mathias O. Senge University of Dublin, Trinity College September 2020 Declaration I declare that this thesis has not been submitted as an exercise for a degree at this or any other university and it is entirely my own work. I agree to deposit this thesis in the University’s open access institutional repository or allow the Library to do so on my behalf, subject to Irish Copyright Legislation and Trinity College Library conditions of use and acknowledgement. I consent to the examiner retaining a copy of the thesis beyond the examining period, should they so wish. Furthermore, unpublished and/or published work of others, is duly acknowledged in the text wherever included. Signed: ____________________________________________ March 2020 Trinity College Dublin ii Summary The primary aim of this research was to synthesise multichromophoric arrays that are linked through rigid isolating units with the capacity to arrange the chromophores in a linear and fixed orientation. The electronically isolated multichromophoric systems could then ultimately be tested in electron transfer studies for their applicability as photosynthesis mimics. Initially, 1,4-diethynylcubane was employed as the rigid isolating scaffold and one to two porphyrins were reacted with it in order to obtain the coupled product(s). Pd-catalysed Sonogashira cross-coupling reactions were used to try and achieve these bisporphyrin complexes. -
Cumulative Chapter Titles by Volume
bindcom.tex 4/18/06 12:24 PM Page 659 CUMULATIVE CHAPTER TITLES BY VOLUME Volume 1 (1942) 1. The Reformatsky Reaction: Ralph L. Shriner 2. The Arndt-Eistert Reaction: W. E. Bachmann and W. S. Struve 3. Chloromethylation of Aromatic Compounds: Reynold C. Fuson and C. H. McKeever 4. The Amination of Heterocyclic Bases by Alkali Amides: Marlin T. Leffler 5. The Bucherer Reaction: Nathan L. Drake 6. The Elbs Reaction: Louis F. Fieser 7. The Clemmensen Reduction: Elmore L. Martin 8. The Perkin Reaction and Related Reactions: John R. Johnson 9. The Acetoacetic Ester Condensation and Certain Related Reactions: Charles R. Hauser and Boyd E. Hudson, Jr. 10. The Mannich Reaction: F. F. Blicke 11. The Fries Reaction: A. H. Blatt 12. The Jacobson Reaction: Lee Irvin Smith Volume 2 (1944) 1. The Claisen Rearrangement: D. Stanley Tarbell 2. The Preparation of Aliphatic Fluorine Compounds: Albert L. Henne 3. The Cannizzaro Reaction: T. A. Geissman 4. The Formation of Cyclic Ketones by Intramolecular Acylation: William S. Johnson 5. Reduction with Aluminum Alkoxides (The Meerwein-Ponndorf-Verley Reduction): A. L. Wilds 659 bindcom.tex 4/18/06 12:24 PM Page 660 660 CUMULATIVE CHAPTER TITLES BY VOLUME 6. The Preparation of Unsymmetrical Biaryls by the Diazo Reaction and the Nitrosoacetylamine Reaction: Werner E. Bachmann and Roger A. Hoffman 7. Replacement of the Aromatic Primary Amino Group by Hydrogen: Nathan Kornblum 8. Periodic Acid Oxidation: Ernest L. Jackson 9. The Resolution of Alcohols: A. W. Ingersoll 10. The Preparation of Aromatic Arsonic and Arsinic Acids by the Bart, Béchamp, and Rosenmund Reactions: Cliff S. -
Diversity-Oriented Combinatorial Biosynthesis of Benzenediol Lactone Scaffolds by Subunit Shuffling of Fungal Polyketide Synthases
Diversity-oriented combinatorial biosynthesis of benzenediol lactone scaffolds by subunit shuffling of fungal polyketide synthases Yuquan Xua,b,1, Tong Zhouc,1, Shuwei Zhangc, Patricia Espinosa-Artilesb, Luoyi Wangc, Wei Zhanga, Min Lina, A. A. Leslie Gunatilakab,d, Jixun Zhanc,2, and István Molnárb,d,2 aBiotechnology Research Institute, The Chinese Academy of Agricultural Sciences, Beijing 100081, P. R. China; bNatural Products Center, School of Natural Resources and the Environment, University of Arizona, Tucson, AZ 85706; cDepartment of Biological Engineering, Utah State University, Logan, UT 84322; and dBio5 Institute, University of Arizona, Tucson, AZ 85721 Edited by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved June 23, 2014 (received for review April 16, 2014) Combinatorial biosynthesis aspires to exploit the promiscuity of biosynthesis inhibitory activities in animals. 10,11-dehydrocurvularin microbial anabolic pathways to engineer the synthesis of new (7;Fig.1)isaDALwitha12-memberedring(DAL12)that chemical entities. Fungal benzenediol lactone (BDL) polyketides modulates the heat shock response and the immune system (8, 9). are important pharmacophores with wide-ranging bioactivities, BDL scaffolds are biosynthesized by pairs of collaborating, including heat shock response and immune system modulatory sequentially acting iterative polyketide synthases (iPKSs) (3) – effects. Their biosynthesis on a pair of sequentially acting iterative forming quasi-modular BDL synthases (BDLSs) (Fig. 1) (11 14). polyketide synthases (iPKSs) offers a test case for the modulariza- Each of the BDLS subunits catalyze recursive, decarboxylative tion of secondary metabolic pathways into “build–couple–pair” Claisen condensations of malonyl-CoA using a single core set of ketoacyl synthase (KS), acyl transferase (AT), and acyl carrier combinatorial synthetic schemes. -
Reactions of Benzene & Its Derivatives
Organic Lecture Series ReactionsReactions ofof BenzeneBenzene && ItsIts DerivativesDerivatives Chapter 22 1 Organic Lecture Series Reactions of Benzene The most characteristic reaction of aromatic compounds is substitution at a ring carbon: Halogenation: FeCl3 H + Cl2 Cl + HCl Chlorobenzene Nitration: H2 SO4 HNO+ HNO3 2 + H2 O Nitrobenzene 2 Organic Lecture Series Reactions of Benzene Sulfonation: H 2 SO4 HSO+ SO3 3 H Benzenesulfonic acid Alkylation: AlX3 H + RX R + HX An alkylbenzene Acylation: O O AlX H + RCX 3 CR + HX An acylbenzene 3 Organic Lecture Series Carbon-Carbon Bond Formations: R RCl AlCl3 Arenes Alkylbenzenes 4 Organic Lecture Series Electrophilic Aromatic Substitution • Electrophilic aromatic substitution: a reaction in which a hydrogen atom of an aromatic ring is replaced by an electrophile H E + + + E + H • In this section: – several common types of electrophiles – how each is generated – the mechanism by which each replaces hydrogen 5 Organic Lecture Series EAS: General Mechanism • A general mechanism slow, rate + determining H Step 1: H + E+ E El e ctro - Resonance-stabilized phile cation intermediate + H fast Step 2: E + H+ E • Key question: What is the electrophile and how is it generated? 6 Organic Lecture Series + + 7 Organic Lecture Series Chlorination Step 1: formation of a chloronium ion Cl Cl + + - - Cl Cl+ Fe Cl Cl Cl Fe Cl Cl Fe Cl4 Cl Cl Chlorine Ferric chloride A molecular complex An ion pair (a Lewis (a Lewis with a positive charge containing a base) acid) on ch lorine ch loronium ion Step 2: attack of -
Experiment 19 — Aldol Condensation
Chem 22 Spring 2010 Experiment 19 — Aldol Condensation _____________________________________________________________________________ Pre-lab preparation. (1) Write the mechanism of the base-catalyzed aldol condensation of acetone and a generalized aromatic aldehyde, Ar–CH=O to give the α,β-unsaturated product (i.e. the reaction at the top of the next page, but with a 1:1 ratio of ketone and aldehyde). Remember that dehydration in this case occurs under basic conditions, so it can't start with protonation of the hydroxyl group. Nor can it go via an E2 pathway. (2) Draw the structures of all the possible aldehyde and ketone reactants (not the 25 possible condensation products!). (3) The new CC double bonds of the condensation products are E rather than Z, as shown in the acetone example. Why? (4) What's the purpose of rinsing the crude product with dilute acetic acid, followed by ethanol? (5) What is the procedure for carrying out a single-solvent recrystallization? Write this out in detail. The aldol condensation has historically been one of the favorite tools in the synthetic organic chemist's repertoire because of its versatility in forming new CC bonds. Since its discovery in the 1870s the aldol condensation has been use extensively in the synthesis of natural products and other complex molecules. In a typical base-catalyzed aldol condensation an enolate ion attacks the carbonyl group of an aldehyde or ketone. This carbonyl addition produces a β-hydroxy carbonyl compound. In many cases the initially formed condensation product undergoes an "E1cB" dehydration to produce an α,β-unsaturated carbonyl compound as the final product. -
Leaving Group of Substrate Important
1 Recap... • Last two lectures we looked at substitution reactions • We found that there we two (extreme) mechanisms • SN1 H H H H H PhS R H R Br R SPh Br • And SN2 H H H H PhS + Br R Br PhS R • We looked at many of the factors that influenced which ..mechanism was operating... • Now we will turn our attention to elimination reactions 2 Elimination reactions NaOH NaOH or low Br H2O OH concentration • You have seen SN1 substitution • Reaction not sped up by altering nucleophile - it is not in RDS • In fact if we increase the amount / concentration of nucleophile we get the following... high O H + + + Br Br OH concentration H H • We observe an elimination reaction • Overall HBr is lost from the molecule • Isn't chemistry fun - these are the same conditions as substitution! • Next two lectures will look at the mechanisms for elimination • And how we control the nature of the reaction we observe... 3 Elimination, bimolecular E2 O H Br HO Br H H • E2 - Elimination bimolecular or 2nd order reaction • 2 molecules in the RDS or transition state H H H H H C H C H H C Br Br H O H C H O H C C H H H H C H C H H H • Two molecules in the rate determining step • So both the base and the substrate control the reaction • Both carbon skeleton & leaving group of substrate important In substitutions nucleophile acts as a nucleophile & attacks carbon In eliminations nucleophile acts as a base & attacks proton 4 Elimination, bimolecular E2: MO • Little confusing as need bonding & anti-bonding in same diagram! • Orbitals need to be parallel for maximum overlap -
Carbonyl Chemistry I: Additions to Carbonyl Groups
Paul Bracher Chem 30 – Section 4 Carbonyl Chemistry I: Additions to Carbonyl Groups Section Agenda 1) Lessons from Exam I, Course Feedbeck Mechanism on Web Site 2) Carbonyl Groups: Structure, Bonding, Molecular Orbitals, Geometry, Reactivity 3) Handout: In-Section Problem Set 4) Handout: In-Section Solution Set 5) Weekly Office Hours: Thursday, 3-4PM and 8-9PM, in Bauer Lobby Structure and Bonding · Carbonyl carbons are roughly sp2 hybridized Molecular Orbital Picture and planar with bond angles near 120 degrees bonding p orbital antibonding p* orbital · The C=O p bond is formed by the overlap of two unhybridized p orbitals. The bond is polarized due to the different electronegativities of carbon and oxygen. 105 o Resonance Model O O Bürgi-Dunitz angle · Another way to picture carbonyl groups is I II through an MO picture. Since the coefficient of · Resonance form II suggests that the carbon pO’s contribution is greater in pC=O, then atom is surrounded by less negative charge conservation of blending atomic orbitals into density than oxygen, rendering the carbon more molecular orbitals tells you that pC must be a electrophilic. larger contributor to the p*C=O orbital. · When reagents add to carbonyl double bonds, · The larger coefficient on oxygen in the filled the nucleophile attacks the carbon atom. orbital explains why the oxygen atom behaves as a Lewis base (it commonly complexes with · Due to the increased negative charge density Lewis acids). The larger coefficient on carbon on oxygen, Lewis acids (such as protons) in the empty antibonding orbital explains why it commonly complex with oxygen.