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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
REEF FISH BIODIVERSITY on KANGAROO ISLAND Oceans of Blue Coast, Estuarine and Marine Monitoring Program
2006-2007 Kangaroo Island Natural Resources ManagementDate2007 Board Kangaroo Island Natural Resources Management Board REEF FISH BIODIVERSITYKangaroo Island Natural ON Resources KANGAROO Management ISLAND Board SEAGRASS FAUNAL BIODIVERSITYREPORT TITLE ON KI Reef Fish Biodiversity on Kangaroo Island 1 REEF FISH BIODIVERSITY ON KANGAROO ISLAND Oceans of Blue Coast, Estuarine and Marine Monitoring Program A report prepared for the Kangaroo Island Natural Resources Management Board by Daniel Brock Martine Kinloch December 2007 Reef Fish Biodiversity on Kangaroo Island 2 Oceans of Blue The views expressed and the conclusions reached in this report are those of the author and not necessarily those of persons consulted. The Kangaroo Island Natural Resources Management Board shall not be responsible in any way whatsoever to any person who relies in whole or in part on the contents of this report. Project Officer Contact Details Martine Kinloch Coast and Marine Program Manager Kangaroo Island Natural Resources Management Board PO Box 665 Kingscote SA 5223 Phone: (08) 8553 4312 Fax: (08) 8553 4399 Email: [email protected] Kangaroo Island Natural Resources Management Board Contact Details Jeanette Gellard General Manager PO Box 665 Kingscote SA 5223 Phone: (08) 8553 4340 Fax: (08) 8553 4399 Email: [email protected] © Kangaroo Island Natural Resources Management Board This document may be reproduced in whole or part for the purpose of study or training, subject to the inclusion of an acknowledgment of the source and to its not being used for commercial purposes or sale. Reproduction for purposes other than those given above requires the prior written permission of the Kangaroo Island Natural Resources Management Board. -
Bolbometopon Muricatum) in North Maluku Waters Muhammad J
DNA barcode and phylogenetics of green humphead parrotfish (Bolbometopon muricatum) in North Maluku waters Muhammad J. Achmad, Riyadi Subur, Supyan, Nebuchadnezzar Akbar Faculty of Fisheries and Marine Sciences, Khairun University, Ternate, North Maluku, Indonesia. Corresponding author: N. Akbar, [email protected] Abstract. The green humphead parrotfish (Bolbometopon muricatum) is one of the large species inhabiting coral reefs in North Maluku waters, Indonesia. The declining fish populations due to excessive fishing has caused the green humphead parrotfish to be listed in the Red List of IUCN in the vulnerable category since 2012. The species could be highly endangered, bordering extinction in the future. Studies on the genetic identification of green humphead parrotfish could be considered critical in the policy of sustainable conservation and fish culture. This research is designed for the identification and analysis of the genetic relationship of green humphead parrotfish based on the COI (cytochrome-c-oxidase subunit I) gene. DNA samples were collected from 4 locations in North Maluku, Ternate Island, Morotai Island, Bacan Island and Sanan Island. The DNA from samples was extracted and the COI gene was amplified using PCR (Polymerase Chain Reaction). Furthermore, the amplicon was sequenced to observe the similarities with the NCBI GenBank database. The results of this study showed that the green humphead parrotfish from this study had high similarities (98-100%) with the green humphead parrotfish with the reference access no. KY235362.1. Based on the phylogenetic tree, the green humphead parrotfish originating from North Maluku has a genetic relationship with the green humphead parrotfish from the database, but with different molecular characters. -
Marine Biodiversity of the South East NRM Region
Marine Environment and Ecology Benthic Ecology Subprogram Marine Biodiversity of the South East NRM Region SARDI Publication No. F2009/000681-1 SARDI Research Report series No. 416 Keith Rowling, Shirley Sorokin, Leonardo Mantilla and David Currie SARDI Aquatic Sciences PO BOX 120 Henley Beach SA 5022 December 2009 Prepared for the Department for Environment and Heritage 1 Information Systems and Database Support Program Marine Biodiversity of the South East NRM Region Keith Rowling, Shirley Sorokin, Leonardo Mantilla and David Currie December 2009 SARDI Publication No. F2009/000681-1 SARDI Research Report Series No. 416 Prepared for the Department for Environment and Heritage 2 This Publication may be cited as: Rowling, K.P., Sorokin, S.J., Mantilla, L. & Currie, D.R.. (2009) Marine Biodiversity of the South East NRM Region. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000681-1. South Australian Research and Development Institute SARDI Aquatic Sciences 2 Hamra Avenue West Beach SA 5024 Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI internal review process, and has been formally approved for release by the Chief of Division. Although all reasonable efforts have been made to ensure quality, SARDI does not warrant that the information in this report is free from errors or omissions. SARDI does not accept any liability for the contents of this report or for any consequences arising from its use or any reliance placed upon it. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Length-Weight Relationships of Thirteen Species of Parrotfish (Family Scaridae) Inhabiting the Egyptian Coasts of the Red Sea
Egyptian Journal of Aquatic Biology & Fisheries Zoology Department, Faculty of Science, Ain Shams University, Cairo, Egypt. ISSN 1110 – 6131 Vol. 23(5): 357 - 366 (2019) www.ejabf.journals.ekb.eg Length-Weight Relationships of Thirteen Species of Parrotfish (Family Scaridae) inhabiting the Egyptian coasts of the Red Sea. Amal M. Amin*, Azza A. El-Ganainy and Manal M. Sabrah National Institute of Oceanography and Fisheries, Suez, Egypt. *Corresponding Author: [email protected] ARTICLE INFO ABSTRACT Article History: Length-weight data of population are basic parameters for any Received: Sept. 8, 2019 monitoring study of fishes since it provides important information about the Accepted: Nov. 27, 2019 structure of the populations. Also, it is important for fish stock assessment Online: Dec. 2019 essential for estimating growth rates, age structure, calculate the standing _______________ stocks biomass, condition indices and several other aspects of fish population dynamics. Therefore, we investigated the length-weight relationships of 13 Keywords: parrotfish species (Family Scaridae) collected seasonally from the Egyptian Red Sea Red Sea coast during 2014/2016. The" b "values of the length-weight Scaridae relationships ranged from 2.17 to 3.88 with a mean value of 2.729±0.0788 Chlorurus geuozonatus (S.E.) for the studied species. Chlorurus geuozonatus showed a positive Calotomus viridescens allometric growth while Calotomus viridescens; Cetoscarus bicolor; Parrotfish Chlorurus sordidus; Chlorurus gibbus; Hipposcarus harid; Scarus frenatus; growth type Scarus ferrugineus; Scarus fuscopurpuerus; Scarus ghobban; scarus niger and Scarus psittacus were show a negative allometric growth. Isometric growth was represented by two species Hipposcarus harid and Scarus colon. 98% of the studied species had "R²" values higher than 0.90, which indicated the increase in length will contribute with increase in weight. -
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Memoirs of the Museum of Victoria 57( I): 143-165 ( 1998) 1 May 1998 https://doi.org/10.24199/j.mmv.1998.57.08 FISHES OF WILSONS PROMONTORY AND CORNER INLET, VICTORIA: COMPOSITION AND BIOGEOGRAPHIC AFFINITIES M. L. TURNER' AND M. D. NORMAN2 'Great Barrier Reef Marine Park Authority, PO Box 1379,Townsville, Qld 4810, Australia ([email protected]) 1Department of Zoology, University of Melbourne, Parkville, Vic. 3052, Australia (corresponding author: [email protected]) Abstract Turner, M.L. and Norman, M.D., 1998. Fishes of Wilsons Promontory and Comer Inlet. Victoria: composition and biogeographic affinities. Memoirs of the Museum of Victoria 57: 143-165. A diving survey of shallow-water marine fishes, primarily benthic reef fishes, was under taken around Wilsons Promontory and in Comer Inlet in 1987 and 1988. Shallow subtidal reefs in these regions are dominated by labrids, particularly Bluethroat Wrasse (Notolabrus tet ricus) and Saddled Wrasse (Notolabrus fucicola), the odacid Herring Cale (Odax cyanomelas), the serranid Barber Perch (Caesioperca rasor) and two scorpidid species, Sea Sweep (Scorpis aequipinnis) and Silver Sweep (Scorpis lineolata). Distributions and relative abundances (qualitative) are presented for 76 species at 26 sites in the region. The findings of this survey were supplemented with data from other surveys and sources to generate a checklist for fishes in the coastal waters of Wilsons Promontory and Comer Inlet. 23 I fishspecies of 92 families were identified to species level. An additional four species were only identified to higher taxonomic levels. These fishes were recorded from a range of habitat types, from freshwater streams to marine habitats (to 50 m deep). -
Effecten Van Fosfaat Addities
The potential Outstanding Universal Value and natural heritage values of Bonaire National Marine Park: an ecological perspective I.J.M. van Beek, J.S.M. Cremer, H.W.G. Meesters, L.E. Becking, J. M. Langley (consultant) Report number C145/14 IMARES Wageningen UR (IMARES - Institute for Marine Resources & Ecosystem Studies) Client: Ministry of Economic Affairs Postbus 20401 2500 EK Den Haag BAS code: BO-11-011.05-037 Publication date: October 2014 IMARES vision: ‘To explore the potential of marine nature to improve the quality of life’. IMARES mission: To conduct research with the aim of acquiring knowledge and offering advice on the sustainable management and use of marine and coastal areas. IMARES is: An independent, leading scientific research institute. P.O. Box 68 P.O. Box 77 P.O. Box 57 P.O. Box 167 1970 AB IJmuiden 4400 AB Yerseke 1780 AB Den Helder 1790 AD Den Burg Texel Phone: +31 (0)317 48 09 00 Phone: +31 (0)317 48 09 00 Phone: +31 (0)317 48 09 00 Phone: +31 (0)317 48 09 00 Fax: +31 (0)317 48 73 26 Fax: +31 (0)317 48 73 59 Fax: +31 (0)223 63 06 87 Fax: +31 (0)317 48 73 62 E-Mail: [email protected] E-Mail: [email protected] E-Mail: [email protected] E-Mail: [email protected] www.imares.wur.nl www.imares.wur.nl www.imares.wur.nl www.imares.wur.nl © 2013 IMARES Wageningen UR IMARES, institute of Stichting DLO The Management of IMARES is not responsible for resulting is registered in the Dutch trade damage, as well as for damage resulting from the application of record nr. -
Reef Fishes of the Phoenix Islands, Central Pacific Ocean
REEF FISHES OF THE PHOENIX ISLANDS, CENTRAL PACIFIC OCEAN BY GERALD ALLEN1 AND STEVEN BAILEY2 ABSTRACT Visual inventories and fish collections were conducted at the Phoenix Islands during June-July 2002. A list of fishes was compiled for 57 sites. The survey involved 163 hours of scuba diving to a maximum depth of 57 m. A total of 451 species were recorded, including 212 new records. The total known fish fauna of the Phoenix Islands now stands at 516 species. A formula for predicting the total reef fish fauna based on the number of species in six key indicator families indicates that at least 576 species can be expected to occur at this location. Wrasses (Labridae), groupers (Serranidae), gobies (Gobiidae), damselfishes (Pomacentridae), and surgeonfishes (Acanthuridae) were the most speciose families with 53, 40, 36, 36, and 32 species respectively. Species numbers at visually sampled sites during the survey ranged from 17 to 166, with an average of 110. Leeward outer reefs contained the highest diversity with an average of 135.5 species per site. Other major habitats included windward outer reefs (123.7 per site), passages (113.5), and lagoon reefs (38.5). The Napoleon Wrasse (Cheilinus undulatus) was extraordinarily abundant, providing excellent baseline information on the natural abundance of this species in the absence of fishing pressure. Conservation recommendations include protection of certain large predatory fishes including the Napoleon Wrasse, Bumphead Parrotfish, and reef sharks. INTRODUCTION The primary goal of the fish survey was to provide a comprehensive inventory of reef fishes inhabiting the Phoenix Islands. This segment of the fauna includes fishes living on or near coral reefs down to the limit of safe sport diving or approximately 55 m depth. -
Sharkcam Fishes a Guide to Nekton at Frying Pan Tower by Erin J
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Information Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 3rd edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2018. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 3rd edition. Los Angeles: Explore.org Ocean Frontiers. 169 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 3.0. 26 January 2018. 2 Table of Contents Identification Images Species Profiles Additional Information Index TABLE OF CONTENTS FOREWORD AND INTRODUCTION.................................................................................. 8 IDENTIFICATION IMAGES .......................................................................................... 11 Sharks and Rays ................................................................................................................................... 11 Table: Relative frequency of occurrence and relative size .................................................................... -
Andrew David Dorka Cobián Rojas Felicia Drummond Alain García Rodríguez
CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington CUBA’S MESOPHOTIC CORAL REEFS Fish Photo Identification Guide ANDREW DAVID DORKA COBIÁN ROJAS FELICIA DRUMMOND ALAIN GARCÍA RODRÍGUEZ Edited by: John K. Reed Stephanie Farrington ACKNOWLEDGMENTS This research was supported by the NOAA Office of Ocean Exploration and Research under award number NA14OAR4320260 to the Cooperative Institute for Ocean Exploration, Research and Technology (CIOERT) at Harbor Branch Oceanographic Institute-Florida Atlantic University (HBOI-FAU), and by the NOAA Pacific Marine Environmental Laboratory under award number NA150AR4320064 to the Cooperative Institute for Marine and Atmospheric Studies (CIMAS) at the University of Miami. This expedition was conducted in support of the Joint Statement between the United States of America and the Republic of Cuba on Cooperation on Environmental Protection (November 24, 2015) and the Memorandum of Understanding between the United States National Oceanic and Atmospheric Administration, the U.S. National Park Service, and Cuba’s National Center for Protected Areas. We give special thanks to Carlos Díaz Maza (Director of the National Center of Protected Areas) and Ulises Fernández Gomez (International Relations Officer, Ministry of Science, Technology and Environment; CITMA) for assistance in securing the necessary permits to conduct the expedition and for their tremendous hospitality and logistical support in Cuba. We thank the Captain and crew of the University of Miami R/V F.G. Walton Smith and ROV operators Lance Horn and Jason White, University of North Carolina at Wilmington (UNCW-CIOERT), Undersea Vehicle Program for their excellent work at sea during the expedition.