Labidesthes Sicculus Menidia Clarkhubbsi Order Beloniformes
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Comprehensive Phylogeny of Ray-Finned Fishes (Actinopterygii) Based on Transcriptomic and Genomic Data
Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data Lily C. Hughesa,b,1,2, Guillermo Ortía,b,1,2, Yu Huangc,d,1, Ying Sunc,e,1, Carole C. Baldwinb, Andrew W. Thompsona,b, Dahiana Arcilaa,b, Ricardo Betancur-R.b,f, Chenhong Lig, Leandro Beckerh, Nicolás Bellorah, Xiaomeng Zhaoc,d, Xiaofeng Lic,d, Min Wangc, Chao Fangd, Bing Xiec, Zhuocheng Zhoui, Hai Huangj, Songlin Chenk, Byrappa Venkateshl,2, and Qiong Shic,d,2 aDepartment of Biological Sciences, The George Washington University, Washington, DC 20052; bNational Museum of Natural History, Smithsonian Institution, Washington, DC 20560; cShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, Beijing Genomics Institute Academy of Marine Sciences, Beijing Genomics Institute Marine, Beijing Genomics Institute, 518083 Shenzhen, China; dBeijing Genomics Institute Education Center, University of Chinese Academy of Sciences, 518083 Shenzhen, China; eChina National GeneBank, Beijing Genomics Institute-Shenzhen, 518120 Shenzhen, China; fDepartment of Biology, University of Puerto Rico–Rio Piedras, San Juan 00931, Puerto Rico; gKey Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Shanghai Ocean University, Ministry of Education, 201306 Shanghai, China; hLaboratorio de Ictiología y Acuicultura Experimental, Universidad Nacional del Comahue–CONICET, 8400 Bariloche, Argentina; iProfessional Committee of Native Aquatic Organisms and Water Ecosystem, China Fisheries Association, 100125 Beijing, China; jCollege of Life Science and Ecology, Hainan Tropical Ocean University, 572022 Sanya, China; kYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 266071 Qingdao, China; and lComparative Genomics Laboratory, Institute of Molecular and Cell Biology, A*STAR, Biopolis, 138673 Singapore Edited by Scott V. -
Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Atheriniformes : Atherinidae
Atheriniformes: Atherinidae 2111 Atheriniformes: Atherinidae Order ATHERINIFORMES ATHERINIDAE Silversides by L. Tito de Morais, IRD/LEMAR, University of Brest, Plouzané, France; M. Sylla, Centre de Recherches Océanographiques de Dakar-Thiaroye (CRODT), Senegal and W. Ivantsoff (retired), Biology Science, Macquarie University NSW 2109, North Ryde, Australia iagnostic characters: Small, elongate fish, rarely exceeding 15 cm in length. Body elongate and Dsomewhat compressed. Short head, generally flattened dorsally, large eyes, sharp nose, mouth small, oblique and in terminal position, jaws subequal, reaching or slightly exceeding the anterior margin of the eye; premaxilla with ascending process of variable length, with lateral process present or absent; ramus of dentary bone elevated posteriorly or indistinct from anterior part of lower jaw; fine, small and sharp teeth on the jaws, on the roof of mouth (vomer, palatine, pterygoid) or on outside of mouth; 10 to 26 gill rakers long and slender on lower arm of first gill arch. Two well-separated dorsal fins, the first with 6 to 10 thin, flexible spines, located approximately in the middle of the body; the second dorsal and anal fins with a single small weak spine, 1 unbranched soft ray and a variable number of soft rays. Anal fin always originating slightly in advance of second dorsal fin; pectoral fins inserted high on the flanks, directly behind posterior rim of gill cover, with spine greatly reduced and first ray much thicker than those following. Abdomninal pelvic fins with 1 spine and 5 soft rays; forked caudal fin; anus away from the origin of the anal fin. Relatively large scales, cycloid (smooth). -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
Age, Growth and Body Condition of Big-Scale Sand Smelt Atherina Boyeri Risso, 1810 Inhabiting a Freshwater Environment: Lake Trasimeno (Italy)
Knowledge and Management of Aquatic Ecosystems (2015) 416, 09 http://www.kmae-journal.org c ONEMA, 2015 DOI: 10.1051/kmae/2015005 Age, growth and body condition of big-scale sand smelt Atherina boyeri Risso, 1810 inhabiting a freshwater environment: Lake Trasimeno (Italy) M. Lorenzoni(1), D. Giannetto(2),,A.Carosi(1), R. Dolciami(3), L. Ghetti(4), L. Pompei(1) Received September 24, 2014 Revised January 29, 2015 Accepted January 29, 2015 ABSTRACT Key-words: The age, growth and body condition of the big-scale sand smelt (Athe- Population rina boyeri) population of Lake Trasimeno were investigated. In total, dynamics, 3998 specimens were collected during the study and five age classes Lee’s (from 0+ to 4+) were identified. From a subsample of 1017 specimens, phenomenon, there were 583 females, 411 males and 23 juveniles. The equations = − fishery between total length (TL) and weight (W) were: log10 W 2.326 + = − management, 3.139 log10 TL for males and log10 W 2.366 + 3.168 log10 TL for fe- introduced males. There were highly significant differences between the sexes and species, for both sexes the value of b (slope of the log (TL-W regression) was Lake Trasimeno greater than 3 (3.139 for males and 3.168 for females), indicating positive allometric growth. The parameters of the theoretical growth curve were: −1 TLt = 10.03 cm; k = 0.18 yr , t0 = −0.443 yr and Φ = 1.65. Monthly trends of overall condition and the gonadosomatic index (GSI) indicated that the reproductive period occurred from March to September. Analy- sis of back-calculated lengths indicated the occurrence of a reverse Lee’s phenomenon. -
Global Patterns of Ranavirus Detections
NOTE Global patterns of ranavirus detections Jesse L. Brunnera*, Deanna H. Olsonb, Matthew J. Grayc, Debra L. Millerd, and Amanda L.J. Duffuse aSchool of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA; bUSDA Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331-8550, USA; cDepartment of Forestry, Wildlife and Fisheries, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; dCollege of Veterinary Medicine, University of Tennessee Institute of Agriculture, Knoxville, TN 37996-4563, USA; eDepartment of Natural Sciences, Gordon State College, Barnesville, GA 30204, USA *[email protected] Abstract Ranaviruses are emerging pathogens of poikilothermic vertebrates. In 2015 the Global Ranavirus Reporting System (GRRS) was established as a centralized, open access, online database for reports of the presence (and absence) of ranavirus around the globe. The GRRS has multiple data layers (e.g., location, date, host(s) species, and methods of detection) of use to those studying the epidemiol- ogy, ecology, and evolution of this group of viruses. Here we summarize the temporal, spatial, diag- nostic, and host-taxonomic patterns of ranavirus reports in the GRRS. The number, distribution, and host diversity of ranavirus reports have increased dramatically since the mid 1990s, presumably in response to increased interest in ranaviruses and the conservation of their hosts, and also the availability of molecular diagnostics. Yet there are clear geographic and taxonomic biases among the OPEN ACCESS reports. We encourage ranavirus researchers to add their studies to the portal because such collation can provide collaborative opportunities and unique insights to our developing knowledge of this For personal use only. -
Appendix 1. (Online Supplementary Material) Species, Gliding Strategies
Appendix 1. (Online Supplementary Material) Species, gliding strategies, species distributions, geographic range sizes, habitat, and egg buoyancy characteristics used for concentrated changes tests. Species Gliding strategy Species distribution (reference #) Geographic range size Habitat (reference #) Egg buoyancy (reference #) Cheilopogon abei (Parin, 1996) 4 wings Indian, Indo-Pacific (1) 2 or more ocean basins meroepipelagic (1) Buoyant (2) Cheilopogon atrisignis (Jenkins, 1903) 4 wings Indian, Pacific (1) 2 or more ocean basins meroepipelgic (3) Buoyant (4) Cheilopogon cyanopterus (Valenciennes, 1847) 4 wings Atlantic, Indo-Pacific (2) 2 or more ocean basins meroepipelgic (3) Non-Buoyant (5) Cheilopogon dorsomacula (Fowler, 1944) 4 wings Pacific (1) within 1 ocean basin holoepipelagic (1) Buoyant (2) Cheilopogon exsiliens (Linnaeus, 1771) 4 wings Atlantic (2) within 1 ocean basin holoepipelagic (3) Buoyant (2,5) Cheilopogon furcatus (Mitchill, 1815) 4 wings Atlantic, Indian, Pacific (6) 2 or more ocean basins holoepipelagic (3) Non-Buoyant (5) Cheilopogon melanurus (Valenciennes, 1847) 4 wings Atlantic (7) within 1 ocean basin meroepipelagic (7) Non-Buoyant (5,8) Cheilopogon pinnatibarbatus (californicus) (Cooper, 1863) 4 wings eastern tropical Pacific (9) within 1 ocean basin meroepipelgic (3) Non-Buoyant (10) Cheilopogon spilonotopterus (Bleeker, 1865) 4 wings Indian and Pacific (1) 2 or more ocean basins meroepipelgic (3) Buoyant (4) Cheilopogon xenopterus (Gilbert, 1890) 4 wings eastern tropical Pacific (11) within 1 ocean basin -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha
Research in Zoology 2014, 4(2): 29-42 DOI: 10.5923/j.zoology.20140402.01 Comparative Osteology of the Jaws in Representatives of the Eurypterygian Fishes Yazdan Keivany Department of Natural Resources (Fisheries Division), Isfahan University of Technology, Isfahan, 84156-83111, Iran Abstract The osteology of the jaws in representatives of 49 genera in 40 families of eurypterygian fishes, including: Aulopiformes, Myctophiformes, Lampridiformes, Polymixiiformes, Percopsiformes, Mugiliformes, Atheriniformes, Beloniformes, Cyprinodontiformes, Stephanoberyciformes, Beryciformes, Zeiformes, Gasterosteiformes, Synbranchiformes, Scorpaeniformes (including Dactylopteridae), and Perciformes (including Elassomatidae) were studied. Generally, in this group, the upper jaw consists of the premaxilla, maxilla, and supramaxilla. The lower jaw consists of the dentary, anguloarticular, retroarticular, and sesamoid articular. In higher taxa, the premaxilla bears ascending, articular, and postmaxillary processes. The maxilla usually bears a ventral and a dorsal articular process. The supramaxilla is present only in some taxa. The dentary is usually toothed and bears coronoid and posteroventral processes. The retroarticular is small and located at the posteroventral corner of the anguloarticular. Keywords Acanthopterygii, Bone, Eurypterygii, Osteology, Percomprpha following method for clearing and staining bone and 1. Introduction cartilage provided in reference [18]. A camera lucida attached to a Wild M5 dissecting stereomicroscope was used Despite the introduction of modern techniques such as to prepare the drawings. The bones in the first figure of each DNA sequencing and barcoding, osteology, due to its anatomical section are arbitrarily shaded and labeled and in reliability, still plays an important role in the systematic the others are shaded in a consistent manner (dark, medium, study of fishes and comprises a major percent of today’s and clear) to facilitate comparison among the taxa. -
Belonidae Bonaparte 1832 Needlefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 16 September 2003 Family Belonidae Bonaparte 1832 needlefishes By Bruce B. Collette National Marine Fisheries Service Systematics Laboratory National Museum of Natural History, Washington, DC 20560–0153, U.S.A. email: [email protected] Needlefishes are a relatively small family of beloniform fishes (Rosen and Parenti 1981 [ref. 5538], Collette et al. 1984 [ref. 11422]) that differ from other members of the order in having both the upper and the lower jaws extended into long beaks filled with sharp teeth (except in the neotenic Belonion), the third pair of upper pharyngeal bones separate, scales on the body relatively small, and no finlets following the dorsal and anal fins. The nostrils lie in a pit anterior to the eyes. There are no spines in the fins. The dorsal fin, with 11–43 rays, and anal fin, with 12–39 rays, are posterior in position; the pelvic fins, with 6 soft rays, are located in an abdominal position; and the pectoral fins are short, with 5–15 rays. The lateral line runs down from the pectoral fin origin and then along the ventral margin of the body. The scales are small, cycloid, and easily detached. Precaudal vertebrae number 33–65, caudal vertebrae 19–41, and total verte- brae 52–97. Some freshwater needlefishes reach only 6 or 7 cm (2.5 or 2.75 in) in total length while some marine species may attain 2 m (6.5 ft). -
Tennessee Fish Species
The Angler’s Guide To TennesseeIncluding Aquatic Nuisance SpeciesFish Published by the Tennessee Wildlife Resources Agency Cover photograph Paul Shaw Graphics Designer Raleigh Holtam Thanks to the TWRA Fisheries Staff for their review and contributions to this publication. Special thanks to those that provided pictures for use in this publication. Partial funding of this publication was provided by a grant from the United States Fish & Wildlife Service through the Aquatic Nuisance Species Task Force. Tennessee Wildlife Resources Agency Authorization No. 328898, 58,500 copies, January, 2012. This public document was promulgated at a cost of $.42 per copy. Equal opportunity to participate in and benefit from programs of the Tennessee Wildlife Resources Agency is available to all persons without regard to their race, color, national origin, sex, age, dis- ability, or military service. TWRA is also an equal opportunity/equal access employer. Questions should be directed to TWRA, Human Resources Office, P.O. Box 40747, Nashville, TN 37204, (615) 781-6594 (TDD 781-6691), or to the U.S. Fish and Wildlife Service, Office for Human Resources, 4401 N. Fairfax Dr., Arlington, VA 22203. Contents Introduction ...............................................................................1 About Fish ..................................................................................2 Black Bass ...................................................................................3 Crappie ........................................................................................7 -
Traveler Information
Traveler Information QUICK LINKS Marine Hazards—TRAVELER INFORMATION • Introduction • Risk • Hazards of the Beach • Animals that Bite or Wound • Animals that Envenomate • Animals that are Poisonous to Eat • General Prevention Strategies Traveler Information MARINE HAZARDS INTRODUCTION Coastal waters around the world can be dangerous. Swimming, diving, snorkeling, wading, fishing, and beachcombing can pose hazards for the unwary marine visitor. The seas contain animals and plants that can bite, wound, or deliver venom or toxin with fangs, barbs, spines, or stinging cells. Injuries from stony coral and sea urchins and stings from jellyfish, fire coral, and sea anemones are common. Drowning can be caused by tides, strong currents, or rip tides; shark attacks; envenomation (e.g., box jellyfish, cone snails, blue-ringed octopus); or overconsumption of alcohol. Eating some types of potentially toxic fish and seafood may increase risk for seafood poisoning. RISK Risk depends on the type and location of activity, as well as the time of year, winds, currents, water temperature, and the prevalence of dangerous marine animals nearby. In general, tropical seas (especially the western Pacific Ocean) are more dangerous than temperate seas for the risk of injury and envenomation, which are common among seaside vacationers, snorkelers, swimmers, and scuba divers. Jellyfish stings are most common in warm oceans during the warmer months. The reef and the sandy sea bottom conceal many creatures with poisonous spines. The highly dangerous blue-ringed octopus and cone shells are found in rocky pools along the shore. Sea anemones and sea urchins are widely dispersed. Sea snakes are highly venomous but rarely bite.