Rapid Startup of Simultaneous Nitrogen and Phosphorus Removal (SNPR) Process and the Bacterial Community Dynamics in a GSBR
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Isotope Array Analysis of Rhodocyclales Uncovers Functional Redundancy and Versatility in an Activated Sludge
The ISME Journal (2009) 3, 1349–1364 & 2009 International Society for Microbial Ecology All rights reserved 1751-7362/09 $32.00 www.nature.com/ismej ORIGINAL ARTICLE Isotope array analysis of Rhodocyclales uncovers functional redundancy and versatility in an activated sludge Martin Hesselsoe1, Stephanie Fu¨ reder2, Michael Schloter3, Levente Bodrossy4, Niels Iversen1, Peter Roslev1, Per Halkjær Nielsen1, Michael Wagner2 and Alexander Loy2 1Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark; 2Department of Microbial Ecology, University of Vienna, Wien, Austria; 3Department of Terrestrial Ecogenetics, Helmholtz Zentrum Mu¨nchen—National Research Center for Environmental Health, Neuherberg, Germany and 4Department of Bioresources/Microbiology, ARC Seibersdorf Research GmbH, Seibersdorf, Austria Extensive physiological analyses of different microbial community members in many samples are difficult because of the restricted number of target populations that can be investigated in reasonable time by standard substrate-mediated isotope-labeling techniques. The diversity and ecophysiology of Rhodocyclales in activated sludge from a full-scale wastewater treatment plant were analyzed following a holistic strategy based on the isotope array approach, which allows for a parallel functional probing of different phylogenetic groups. Initial diagnostic microarray, comparative 16S rRNA gene sequence, and quantitative fluorescence in situ hybridization surveys indicated the presence of a diverse community, consisting of an estimated number of 27 operational taxonomic units that grouped in at least seven main Rhodocyclales lineages. Substrate utilization profiles of probe-defined populations were determined by radioactive isotope array analysis and microautoradiography-fluorescence in situ hybridization of activated sludge samples that were briefly exposed to different substrates under oxic and anoxic, nitrate-reducing conditions. -
Anaerobic Degradation of Steroid Hormones by Novel Denitrifying Bacteria
Anaerobic degradation of steroid hormones by novel denitrifying bacteria Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der Rheinisch- Westfälischen Technischen Hochschule Aachen zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigte Dissertation vorgelegt von Diplom-Biologe Michael Fahrbach aus Bad Mergentheim (Baden-Württemberg) Berichter: Professor Dr. Juliane Hollender Professor Dr. Andreas Schäffer Tag der mündlichen Prüfung: 12. Dezember 2006 Diese Dissertation ist auf den Internetseiten der Hochschulbibliothek online verfügbar. Table of Contents 1 Introduction.....................................................................................................................1 1.1 General information on steroids ...............................................................................1 1.2 Steroid hormones in the environment.......................................................................2 1.2.1 Natural and anthropogenic sources and deposits ............................................2 1.2.2 Potential impact on the environment ................................................................3 1.2.3 Fate of steroid hormones..................................................................................4 1.3 Microbial degradation of steroid hormones and sterols............................................5 1.3.1 Aerobic degradation..........................................................................................5 1.3.2 Anaerobic degradation......................................................................................7 -
Biodegradation of Aromatic Hydrocarbons in Oxygen-Limited Groundwater
TECHNISCHE UNIVERSITÄT MÜNCHEN Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt Lehrstuhl für Mikrobologie Biodegradation of aromatic hydrocarbons in oxygen-limited groundwater Lauren Bradford Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzende(r): Hon.-Prof. Dr. Michael Schloter Prüfer der Dissertation: 1. Prof. Dr. Tillmann Lüders 2. Prof. Dr. Wolfgang Liebl Die Dissertation wurde am 27.01.2020 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 08.06.2020 angenommen. 1 Abstract Hydrocarbon contamination of groundwater is a global problem, negatively impacting human health and ecosystem functioning. One of the main ways to mitigate this issue is bioremediation, the use of microorganisms to sequester or break down pollutants. Bacteria capable of metabolizing hydrocarbons are widespread in the environment, including groundwater. They rely on a variety of metabolic and respiratory strategies, distinguished primarily by the availability of oxygen. Oxygen can act as a terminal electron acceptor (TEA) during respiration, but also as a metabolic co-substrate during the breakdown of stable compounds like aromatic hydrocarbons. Anaerobic degradation relies on alternative TEAs and mechanisms of aromatic destabilization. Strictly aerobic and anaerobic hydrocarbon degradation have been well studied in recent decades, but hot spots of degradation occur at the fringes of contaminant plumes, where mixing of oxygen and other TEAs create dynamic, TEA- limited conditions. Microaerobes and other microbes with specialized strategies that could offer advantages in such conditions have been poorly investigated, despite their probable contribution to pollutant degradation in environmentally-relevant situations. -
The Succession Pattern of Bacterial Diversity in Compost Using Pig
bioRxiv preprint doi: https://doi.org/10.1101/674069; this version posted June 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 The succession pattern of bacterial diversity in compost using pig 2 manure mixed with wood chips analyzed by 16S rRNA gene analysis 3 Zhengfeng Li4¶, Yan Yang1,2,3¶, Yuzhen Xia5, Tao Wu4, Jie Zhu4, Zhaobao Wang1,2,3*, Jianming 4 Yang1,2,3* 5 1 Energy-rich Compounds Production by Photosynthetic Carbon Fixation Research Center, 6 Qingdao Agricultural University, Qingdao, China 7 2 Shandong Province Key Laboratory of Applied Mycology, Qingdao Agricultural University, 8 Qingdao, China 9 3 College of Life Sciences, Qingdao Agricultural University, Qingdao, China 10 4 China Tobacco Yunnan Industrial Co., Ltd., Kunming, China 11 5 Hongta Tobacco (Group) Co., Ltd., Yuxi, China 12 13 14 * Corresponding authors 15 Email: [email protected] (ZW), 16 [email protected] (JY) 17 18 ¶ These authors are co-first authors on this work. 19 20 21 22 23 24 bioRxiv preprint doi: https://doi.org/10.1101/674069; this version posted June 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 25 Abstract 26 The pig manure mixed with wood chips and formed compost by means of 27 fermentation. -
The Succession Pattern of Bacterial Diversity in Compost Using Pig
bioRxiv preprint doi: https://doi.org/10.1101/674069; this version posted June 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 The succession pattern of bacterial diversity in compost using pig 2 manure mixed with wood chips analyzed by 16S rRNA gene analysis 3 Zhengfeng Li4¶, Yan Yang1,2,3¶, Yuzhen Xia5, Tao Wu4, Jie Zhu4, Zhaobao Wang1,2,3*, Jianming 4 Yang1,2,3* 5 1 Energy-rich Compounds Production by Photosynthetic Carbon Fixation Research Center, 6 Qingdao Agricultural University, Qingdao, China 7 2 Shandong Province Key Laboratory of Applied Mycology, Qingdao Agricultural University, 8 Qingdao, China 9 3 College of Life Sciences, Qingdao Agricultural University, Qingdao, China 10 4 China Tobacco Yunnan Industrial Co., Ltd., Kunming, China 11 5 Hongta Tobacco (Group) Co., Ltd., Yuxi, China 12 13 14 * Corresponding authors 15 Email: [email protected] (ZW), 16 [email protected] (JY) 17 18 ¶ These authors are co-first authors on this work. 19 20 21 22 23 24 bioRxiv preprint doi: https://doi.org/10.1101/674069; this version posted June 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 25 Abstract 26 The pig manure mixed with wood chips and formed compost by means of 27 fermentation. -
Outline Release 7 7C
Taxonomic Outline of Bacteria and Archaea, Release 7.7 Taxonomic Outline of the Bacteria and Archaea, Release 7.7 March 6, 2007. Part 4 – The Bacteria: Phylum “Proteobacteria”, Class Betaproteobacteria George M. Garrity, Timothy G. Lilburn, James R. Cole, Scott H. Harrison, Jean Euzéby, and Brian J. Tindall Class Betaproteobacteria VP Garrity et al 2006. N4Lid DOI: 10.1601/nm.16162 Order Burkholderiales VP Garrity et al 2006. N4Lid DOI: 10.1601/nm.1617 Family Burkholderiaceae VP Garrity et al 2006. N4Lid DOI: 10.1601/nm.1618 Genus Burkholderia VP Yabuuchi et al. 1993. GOLD ID: Gi01836. GCAT ID: 001596_GCAT. Sequenced strain: SRMrh-20 is from a non-type strain. Genome sequencing is incomplete. Number of genomes of this species sequenced 2 (GOLD) 1 (NCBI). N4Lid DOI: 10.1601/nm.1619 Burkholderia cepacia VP (Palleroni and Holmes 1981) Yabuuchi et al. 1993. <== Pseudomonas cepacia (basonym). Synonym links through N4Lid: 10.1601/ex.2584. Source of type material recommended for DOE sponsored genome sequencing by the JGI: ATCC 25416. High-quality 16S rRNA sequence S000438917 (RDP), U96927 (Genbank). GOLD ID: Gc00309. GCAT ID: 000301_GCAT. Entrez genome id: 10695. Sequenced strain: ATCC 17760, LMG 6991, NCIMB9086 is from a non-type strain. Genome sequencing is completed. Number of genomes of this species sequenced 1 (GOLD) 1 (NCBI). N4Lid DOI: 10.1601/nm.1620 Pseudomonas cepacia VP (ex Burkholder 1950) Palleroni and Holmes 1981. ==> Burkholderia cepacia (new combination). Synonym links through N4Lid: 10.1601/ex.2584. Source of type material recommended for DOE sponsored genome sequencing by the JGI: ATCC 25416. High- quality 16S rRNA sequence S000438917 (RDP), U96927 (Genbank). -
Wo 2011/009849 A2
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date 27 January 2011 (27.01.2011) WO 2011/009849 A2 (51) International Patent Classification: (74) Common Representative: BASF SE; 67056 Lud C12P 7/62 (2006.01) wigshafen (DE). (21) International Application Number: (81) Designated States (unless otherwise indicated, for every PCT/EP2010/060458 kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, (22) Date: International Filing CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, DO, 20 July 2010 (20.07.2010) DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (25) Filing Language: English HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, (26) Publication Language: English ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, (30) Priority Data: NO, NZ, OM, PE, PG, PH, PL, PT, RO, RS, RU, SC, SD, 09166015.9 2 1 July 2009 (21 .07.2009) EP SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, 61/227,797 23 July 2009 (23.07.2009) US TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (71) Applicants (for all designated States except US): BASF (84) Designated States (unless otherwise indicated, for every SE [DE/DE]; 67056 Ludwigshafen (DE). MAX- kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN E.V. -
Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Copenhagen University Research Information System Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota Bradford, Lauren M.; Vestergaard, Gisle; Táncsics, András; Zhu, Baoli; Schloter, Michael; Lueders, Tillmann Published in: Frontiers in Microbiology DOI: 10.3389/fmicb.2018.02696 Publication date: 2018 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Bradford, L. M., Vestergaard, G., Táncsics, A., Zhu, B., Schloter, M., & Lueders, T. (2018). Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota. Frontiers in Microbiology, 9, [2696]. https://doi.org/10.3389/fmicb.2018.02696 Download date: 09. apr.. 2020 fmicb-09-02696 November 13, 2018 Time: 12:54 # 1 ORIGINAL RESEARCH published: 13 November 2018 doi: 10.3389/fmicb.2018.02696 Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota Lauren M. Bradford1, Gisle Vestergaard2,3, András Táncsics4, Baoli Zhu1, Michael Schloter4 and Tillmann Lueders1* 1 Institute of Groundwater Ecology, Helmholtz Zentrum München, Neuherberg, Germany, 2 Section of Microbiology, University of Copenhagen, Copenhagen, Denmark, 3 Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum Edited by: München, Neuherberg, Germany, 4 Regional University Center of Excellence in Environmental Industry, Szent István Zofia Piotrowska-Seget, University, Gödöllö, Hungary University of Silesia of Katowice, Poland Reviewed by: While most studies using RNA-stable isotope probing (SIP) to date have focused on Siavash Atashgahi, ribosomal RNA, the detection of 13C-labeled mRNA has rarely been demonstrated. -
The Geomicrobiology of Cementitious Radioactive Waste
The Geomicrobiology of Cementitious Radioactive Waste A thesis submitted to The University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences 2014 Adam John Williamson School of Earth, Atmospheric and Environmental Sciences Table of Contents Table of Contents .............................................................................................................. 2 List of Figures ................................................................................................................... 8 List of Tables................................................................................................................... 13 Abbreviations .................................................................................................................. 16 Abstract ........................................................................................................................... 18 Declaration ...................................................................................................................... 19 Copyright Statement ....................................................................................................... 20 Acknowledgments .......................................................................................................... 21 The Author ..................................................................................................................... 22 1. Introduction and Thesis Content ........................................................................... -
Aalborg Universitet Single-Cell Ecophysiology of Key Microbial Taxa
Aalborg Universitet Single-cell ecophysiology of key microbial taxa in wastewater treatment systems A trip to unveil the microbial "dark matter" Petriglieri, Francesca Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link to publication from Aalborg University Citation for published version (APA): Petriglieri, F. (2020). Single-cell ecophysiology of key microbial taxa in wastewater treatment systems: A trip to unveil the microbial "dark matter". Aalborg Universitetsforlag. Ph.d.-serien for Det Ingeniør- og Naturvidenskabelige Fakultet, Aalborg Universitet General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. ? Users may download and print one copy of any publication from the public portal for the purpose of private study or research. ? You may not further distribute the material or use it for any profit-making activity or commercial gain ? You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us at [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from vbn.aau.dk on: September 23, 2021 TAXA IN WASTEWATER TREATMENT SYSTEMS TREATMENT WASTEWATER IN TAXA MICROBIAL KEY OF ECOPHYSIOLOGY SINGLE-CELL SINGLE-CELL ECOPHYSIOLOGY OF KEY MICROBIAL TAXA IN WASTEWATER TREATMENT SYSTEMS A TRIP TO UNVEIL THE MICROBI AL “DARK MAT TER” BY FRANCESCA PETRIGLIERI DISSERTATION SUBMITTED 2020 FRANCESCA PETRIGLIERI FRANCESCA SINGLE-CELL ECOPHYSIOLOGY OF KEY MICROBIAL TAXA IN WASTEWATER TREATMENT SYSTEMS A TRIP TO UNVEIL THE MICROBIAL “DARK MATTER” By Francesca Petriglieri Dissertation submitted August 2020 .