Can a Use-Based Taxonomy Be Natural? an Example from Aguaruna Folk Classification of Trees Kevin Jernigan
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Phylogeny and Systematics of the Rauvolfioideae
PHYLOGENY AND SYSTEMATICS Andre´ O. Simo˜es,2 Tatyana Livshultz,3 Elena OF THE RAUVOLFIOIDEAE Conti,2 and Mary E. Endress2 (APOCYNACEAE) BASED ON MOLECULAR AND MORPHOLOGICAL EVIDENCE1 ABSTRACT To elucidate deeper relationships within Rauvolfioideae (Apocynaceae), a phylogenetic analysis was conducted using sequences from five DNA regions of the chloroplast genome (matK, rbcL, rpl16 intron, rps16 intron, and 39 trnK intron), as well as morphology. Bayesian and parsimony analyses were performed on sequences from 50 taxa of Rauvolfioideae and 16 taxa from Apocynoideae. Neither subfamily is monophyletic, Rauvolfioideae because it is a grade and Apocynoideae because the subfamilies Periplocoideae, Secamonoideae, and Asclepiadoideae nest within it. In addition, three of the nine currently recognized tribes of Rauvolfioideae (Alstonieae, Melodineae, and Vinceae) are polyphyletic. We discuss morphological characters and identify pervasive homoplasy, particularly among fruit and seed characters previously used to delimit tribes in Rauvolfioideae, as the major source of incongruence between traditional classifications and our phylogenetic results. Based on our phylogeny, simple style-heads, syncarpous ovaries, indehiscent fruits, and winged seeds have evolved in parallel numerous times. A revised classification is offered for the subfamily, its tribes, and inclusive genera. Key words: Apocynaceae, classification, homoplasy, molecular phylogenetics, morphology, Rauvolfioideae, system- atics. During the past decade, phylogenetic studies, (Civeyrel et al., 1998; Civeyrel & Rowe, 2001; Liede especially those employing molecular data, have et al., 2002a, b; Rapini et al., 2003; Meve & Liede, significantly improved our understanding of higher- 2002, 2004; Verhoeven et al., 2003; Liede & Meve, level relationships within Apocynaceae s.l., leading to 2004; Liede-Schumann et al., 2005). the recognition of this family as a strongly supported Despite significant insights gained from studies clade composed of the traditional Apocynaceae s. -
Biodiversity in Forests of the Ancient Maya Lowlands and Genetic
Biodiversity in Forests of the Ancient Maya Lowlands and Genetic Variation in a Dominant Tree, Manilkara zapota (Sapotaceae): Ecological and Anthropogenic Implications by Kim M. Thompson B.A. Thomas More College M.Ed. University of Cincinnati A Dissertation submitted to the University of Cincinnati, Department of Biological Sciences McMicken College of Arts and Sciences for the degree of Doctor of Philosophy October 25, 2013 Committee Chair: David L. Lentz ABSTRACT The overall goal of this study was to determine if there are associations between silviculture practices of the ancient Maya and the biodiversity of the modern forest. This was accomplished by conducting paleoethnobotanical, ecological and genetic investigations at reforested but historically urbanized ancient Maya ceremonial centers. The first part of our investigation was conducted at Tikal National Park, where we surveyed the tree community of the modern forest and recovered preserved plant remains from ancient Maya archaeological contexts. The second set of investigations focused on genetic variation and structure in Manilkara zapota (L.) P. Royen, one of the dominant trees in both the modern forest and the paleoethnobotanical remains at Tikal. We hypothesized that the dominant trees at Tikal would be positively correlated with the most abundant ancient plant remains recovered from the site and that these trees would have higher economic value for contemporary Maya cultures than trees that were not dominant. We identified 124 species of trees and vines in 43 families. Moderate levels of evenness (J=0.69-0.80) were observed among tree species with shared levels of dominance (1-D=0.94). From the paleoethnobotanical remains, we identified a total of 77 morphospecies of woods representing at least 31 plant families with 38 identified to the species level. -
04 2205 Apocynoideae Calongea.Qxd
Anales del Jardín Botánico de Madrid Vol. 66(2): 217-262 julio-diciembre 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2205 Estudios en las Apocynaceae neotropicales XXXIX: revisión de las Apocynoideae y Rauvolfioideae de Honduras por J. Francisco Morales Instituto Nacional de Biodiversidad (INBio). Apto. 23-3100, Santo Domingo de Heredia, Costa Rica. Resumen Abstract Morales, J.F. 2009. Estudios en las Apocynaceae neotropicales Morales, J.F. 2009. Study in Neotropical Apocynaceae XXXIX: XXXIX: revisión de las Apocynoideae y Rauvolfioideae de Hon- review of Apocynoideae and Rauvolfioideae from Honduras. duras. Anales Jard. Bot. Mad. 66(2): 217-262. Anales Jard. Bot. Madrid. 66(2): 217-262 (in Spanish). Se presenta un tratamiento de las subfamilias Apocynoideae y A treatment of the subfamilies Apocynoideae and Rauvol- Rauvolfioideae (Apocynaceae) en la República de Honduras, Cen- fioideae (Apocynaceae) in Honduras, is presented. A total of 55 troamérica. Un total de 55 especies distribuidas en 30 géneros species in 30 genera (Allamanda, Allomarkgrafia, Anechites, As- (Allamanda, Allomarkgrafia, Anechites, Aspidosperma, Beau- pidosperma, Beaumontia, Carissa, Cascabela, Catharanthus, montia, Carissa, Cascabela, Catharanthus, Echites, Fernaldia, Fors- Echites, Fernaldia, Forsteronia, Lacmellea, Macropharynx, Ma- teronia, Lacmellea, Macropharynx, Malouetia, Mandevilla, Mese- louetia, Mandevilla, Mesechites, Nerium, Odontadenia, Pentali- chites, Nerium, Odontadenia, Pentalinon, Plumeria, Prestonia, non, Plumeria, Prestonia, Rauvolfia, Rhabdadenia, -
Incidence of Extra-Floral Nectaries and Their Effect on the Growth and Survival of Lowland Tropical Rain Forest Trees
Incidence of Extra-Floral Nectaries and their Effect on the Growth and Survival of Lowland Tropical Rain Forest Trees Honors Research Thesis Presented in Partial Fulfillment of the Requirements for graduation “with Honors Research Distinction in Evolution and Ecology” in the undergraduate colleges of The Ohio State University by Andrew Muehleisen The Ohio State University May 2013 Project Advisor: Dr. Simon Queenborough, Department of Evolution, Ecology and Organismal Biology Incidence of Extra-Floral Nectaries and their Effect on the Growth and Survival of Lowland Tropical Rain Forest Trees Andrew Muehleisen Evolution, Ecology & Organismal Biology, The Ohio State University, OH 43210, USA Summary Mutualistic relationships between organisms have long captivated biologists, and extra-floral nectaries (EFNs), or nectar-producing glands, found on many plants are a good example. The nectar produced from these glands serves as food for ants which attack intruders that may threaten their free meal, preventing herbivory. However, relatively little is known about their impact on the long-term growth and survival of plants. To better understand the ecological significance of EFNs, I examined their incidence on lowland tropical rain forest trees in Yasuni National Park in Amazonian Ecuador. Of those 896 species that were observed in the field, EFNs were found on 96 species (11.2%), widely distributed between different angiosperm families. This rate of incidence is high but consistent with other locations in tropical regions. Furthermore, this study adds 13 new genera and 2 new families (Urticaceae and Caricaceae) to the list of taxa exhibiting EFNs. Using demographic data from a long-term forest dynamics plot at the same site, I compared the growth and survival rates of species that have EFNs with those that do not. -
Tropical Rainforests Getting Their Fix: the Ecological Drivers and Consequences of Nitrogen-Fixing Trees in Regenerating Costa Rican Rainforests Benton Taylor
Tropical rainforests getting their fix: The ecological drivers and consequences of nitrogen-fixing trees in regenerating Costa Rican rainforests Benton Taylor Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2018 © 2018 Benton Taylor All rights reserved ABSTRACT Tropical rainforests getting their fix: The ecological drivers and consequences of nitrogen-fixing trees in regenerating Costa Rican rainforests Benton Taylor Tropical rainforests have an unparalleled capacity to sequester carbon, harbor biodiversity, and cycle water and nutrients due to their high rates of primary production. The large biomass stocks and rapid regeneration rates of these forests are often attributed to ample soil nitrogen and quick recovery of the nitrogen cycle in tropical soils following disturbance. Symbiotic nitrogen-fixing trees, which are relatively abundant at tropical latitudes, have the greatest capacity to provide tropical rainforests with new nitrogen, yet the ecological drivers of tropical symbiotic nitrogen fixers and their effects on the forests they inhabit are not well understood. This dissertation consists of four chapters that examine the patterns, environmental controls, and ecological consequences of symbiotic nitrogen-fixing trees in regenerating and intact rainforests in the Caribbean lowlands of Costa Rica. In chapter 1, I use field sampling in a chronosequence of rainforest plots to show that symbiotic nitrogen fixation declines through succession despite increases in the basal area of nitrogen-fixing trees. Chapters 2 and 3 describe results from a controlled shadehouse experiment assessing the effects of light, soil nitrogen, and plant competition on nitrogen fixation rates and the growth and biomass allocation of nitrogen fixers and non-fixers. -
Forest Regeneration on the Osa Peninsula, Costa Rica Manette E
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-27-2012 Forest Regeneration on the Osa Peninsula, Costa Rica Manette E. Sandor University of Connecticut, [email protected] Recommended Citation Sandor, Manette E., "Forest Regeneration on the Osa Peninsula, Costa Rica" (2012). Master's Theses. 369. https://opencommons.uconn.edu/gs_theses/369 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. Forest Regeneration on the Osa Peninsula, Costa Rica Manette Eleasa Sandor A.B., Vassar College, 2004 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science At the University of Connecticut 2012 i APPROVAL PAGE Masters of Science Thesis Forest Regeneration on the Osa Peninsula, Costa Rica Presented by Manette Eleasa Sandor, A.B. Major Advisor________________________________________________________________ Robin L. Chazdon Associate Advisor_____________________________________________________________ Robert K. Colwell Associate Advisor_____________________________________________________________ Michael R. Willig University of Connecticut 2012 ii Acknowledgements Funding for this project was provided through the Connecticut State Museum of Natural History Student Research Award and the Blue Moon Fund. Both Osa Conservation and Lapa Ríos Ecolodge and Wildlife Resort kindly provided the land on which various aspects of the project took place. Three herbaria helpfully provided access to their specimens: Instituto Nacional de Biodiversidad (INBio) in Costa Rica, George Safford Torrey Herbarium at the University of Connecticut, and the Harvard University Herbaria. -
Host-Generalist Fungal Pathogens of Seedlings May Maintain Forest
1 Supporting Information 2 Article title: : Host-generalist fungal pathogens of seedlings may maintain forest diversity via 3 host-specific impacts and differential susceptibility among tree species 4 Authors: Erin R. Spear and Kirk D. Broders 5 6 The following Supporting Information is available for this article: 7 Fig. S1 Examples of disease symptoms in the forests of Panama. 8 Fig. S2 Details of shadehouse-based inoculation experiments. 9 Fig. S3 Rank abundance plot and OTU accumulation curve. 10 Fig. S4 Overlap in fungal OTUs among sampling years, methods used to obtain symptomatic 11 seedlings, isolation media, and tissue sampled. 12 Fig. S5 Correlation between OTU host range and isolation frequency. 13 Table S1 Taxonomic assignments, traits, sampling effort, and observed OTUs for tree species 14 evaluated in our survey and experimental approaches. 15 Table S2 Methodological details pertaining to the multi-year collection of symptomatic 16 seedlings, and microbial isolation and sequencing. 17 Table S3 Average light levels, air temperatures, and relative humidities of the shadehouses 18 used for inoculation experiments versus ambient conditions. 19 Table S4 Estimated taxonomic placement, isolation frequency, number of observed hosts, 20 estimated host specialization, and phylogenetic pattern of host use of the OTUs. 21 Table S5 Overlap in seedling-associated OTUs among tree species. 22 Table S6 Results of the beta-binomial generalized linear regression with the proportion of 23 diseased seedlings as a function of seed size and shade tolerance. 24 Table S7 Average estimates based on the best-ranked beta-binomial generalized linear 1 25 regressions with the proportion of diseased seedlings as a function of seed size and spatial 26 distribution relative to annual rainfall. -
Catalogue of the Flora of the Bahía Honda Region
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A Revised Classification of the Apocynaceae S.L
THE BOTANICAL REVIEW VOL. 66 JANUARY-MARCH2000 NO. 1 A Revised Classification of the Apocynaceae s.l. MARY E. ENDRESS Institute of Systematic Botany University of Zurich 8008 Zurich, Switzerland AND PETER V. BRUYNS Bolus Herbarium University of Cape Town Rondebosch 7700, South Africa I. AbstractYZusammen fassung .............................................. 2 II. Introduction .......................................................... 2 III. Discussion ............................................................ 3 A. Infrafamilial Classification of the Apocynaceae s.str ....................... 3 B. Recognition of the Family Periplocaceae ................................ 8 C. Infrafamilial Classification of the Asclepiadaceae s.str ..................... 15 1. Recognition of the Secamonoideae .................................. 15 2. Relationships within the Asclepiadoideae ............................. 17 D. Coronas within the Apocynaceae s.l.: Homologies and Interpretations ........ 22 IV. Conclusion: The Apocynaceae s.1 .......................................... 27 V. Taxonomic Treatment .................................................. 31 A. Key to the Subfamilies of the Apocynaceae s.1 ............................ 31 1. Rauvolfioideae Kostel ............................................. 32 a. Alstonieae G. Don ............................................. 33 b. Vinceae Duby ................................................. 34 c. Willughbeeae A. DC ............................................ 34 d. Tabernaemontaneae G. Don .................................... -
Rapid Ecological Assessment Aguacaliente Wildlife Sanctuary
RAPID ECOLOGICAL ASSESSMENT AGUACALIENTE WILDLIFE SANCTUARY Jan C. Meerman Augustin Howe, Steven Choco, Adriano Ack, Elam Choc, Santos Kok & Alberto Muku This report was prepared for: Aguacaliente Management Team under grants provided by PACT with additional assistance from Belize Tropical Forest Studies. December, 2006 RAPID ECOLOGICAL ASSESSMENT AGUACALIENTE WILDLIFE SANCTUARY J an C. Meerman Augustin Howe, Steven Choco, Adriano Ack, Elam Choc, Santos Kok & Alberto Muku Page: 1. Introduction 1 1.1. General Introduction 1 1.2. History of Research 4 1.3. Climate 5 1.4. Socio-economic Context 7 1.5. Socio-economic characteristics influenced by the site 10 1.5.1. Past use 10 1.5.2. Present use 11 2. Geology 14 3. Hydrology 15 4. Vegetation/Ecosystems 18 4.1. Ecosystems 18 4.2. Flora 30 5. Fauna 5.1. Invertebrates 38 5.2. Fish 39 5.3. Amphibians 40 5.4. Reptiles 41 5.5. Birds 42 5.6. Mammals 50 6. Threats 51 7. Zonation 52 8. Next steps 53 8.1. Conservation Targets 53 8.2. Compatible uses 53 8.3. Monitoring 54 9. Literature 55 10. Appendices 56 Transect data Swamp forest: Aguacaliente Variant 0 Species list: Plants 1 Species list: Butterflies 12 Species list: Fishes 14 Species list: Amphibians and Reptiles 15 Species list: Birds 16 Species list: Mammals 24 This report was prepared for: Aguacaliente Management Team under a grant provided by PACT with additional assistance from Belize Tropical Forest Studies: DECEMBER 2006 Figures: Page Figure 1. Location within Belize 1 Figure 2. Map of Aguacaliente Wildlife Sanctuary plus surrounding 2 communities, roads, rivers and streams Figure 3. -
FOODS for EARL Y MAN the Foods Used by Early Man We Do Not Know
FOODS FOR EARLY MAN The foods used by early man we do not know much about except to know that he did live, must have eaten and did pass this way. I surmise in many places in this work that the known distribution of sorne of our useful plants may have come about by early man carrying them along, even if sometimes uninten tionally. I am sure that there are interesting things to be known about the useful plants that were not understood or even sur mised by early man. Maize and ordinary beans (no beans really are ordinary) go far toward balancing a diet. Add a few more things, perhaps essentials, from chile peppers, avocados and the many other fruits, and the life span might increase. Who discovered these thing; and how did it come about that these foods seemed to have been used together? Pre-Columbian but relatively recent residents of our area obviously did use these foods together and carne to like and to appreciate them, and these foods weregoodforthem! The reason why they were good for them surely did not occur to these ancient people. Foods from plants Many plants produce more food than they need to build tissue or as energy. These foods are stored by the plant for later use or perhaps as reserves to help assure the perpetuation of the species. These reserves are mostly the plant products appropri~ ated by man and by other animals. The reserve foods of plants -are of three general classes, carbohydrates, proteins and fats. Man, in the course of time, has learned to cultivate those plants which store an abundance of reserve foods. -
Genetic Diversity of Amsonia Orientalis
Biologia 69/6: 742—749, 2014 Section Botany DOI: 10.2478/s11756-014-0368-6 Genetic diversity of Amsonia orientalis Cem Tolga Gurkanli¨ 1*, Ibrahim˙ Ozkoc¨ ¸2,EmineBanuAydin 2,ArdaAcem˙i3 &FazılOzen¨ 3 1Department of Fisheries Technology Engineering, Fatsa Faculty of Marine Sciences, Ordu University, 52400,Fatsa, Ordu/Turkey; e–mail: [email protected], [email protected] 2Department of Biology, Faculty of Arts and Sciences, Ondokuz Mayıs University, 55139, Atakum, Samsun/Turkey 3Department of Biology, Faculty of Arts and Sciences, Kocaeli University, 41380, Kocaeli/Turkey Abstract: Amsonia orientalis Decne. (Apocynaceae), is a rare and threatened plant species which is located only in a constricted area in northeast of Greece and northwest of Turkey in the world. Although phylogenetic analysis depending on nucleotide sequences of genes from different sources (nucleus, mitochondria and chloroplast) became a major tool for classification of plant species, there is still a big lack of information about A. orientalis in the international molecular data bases such as NCBI. In the current study, we phylogenetically analyzed three commonly used molecular markers (18S rDNA, 18S-28S rDNA-ITS region and trnL–F intergenic spacer) from A. orientalis samples collected from Turkey to determine the genetic diversity and also to question the systematic position of A. orientalis.Asaresult,A. orientalis samples clearly showed close relation with Alyxieae tribe rather than Vinceae. And this result brings the necessity to reconsider the morphological characters that have used to delimit the tribes of Rauvolfioideae. Key words: Amsonia orientalis; Apocynaceae; 18S rDNA; 18S–28S rDNA-ITS; trnL–F spacer Introduction Ozen¨ (2006) implemented an ex situ protection since the habitats of the plant were under serious threat.