Response of Marine Food Webs to Climate-Induced Changes in Temperature and Inflow of Allochthonous Organic Matter
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A New Type of Plankton Food Web Functioning in Coastal Waters Revealed by Coupling Monte Carlo Markov Chain Linear Inverse Metho
A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, Aurélie Chaalali, Olivier Pringault, Asma Sakka Hlaili To cite this version: Marouan Meddeb, Nathalie Niquil, Boutheina Grami, Kaouther Mejri, Matilda Haraldsson, et al.. A new type of plankton food web functioning in coastal waters revealed by coupling Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis. Ecological Indicators, Elsevier, 2019, 104, pp.67-85. 10.1016/j.ecolind.2019.04.077. hal-02146355 HAL Id: hal-02146355 https://hal.archives-ouvertes.fr/hal-02146355 Submitted on 3 Jun 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 A new type of plankton food web functioning in coastal waters revealed by coupling 2 Monte Carlo Markov Chain Linear Inverse method and Ecological Network Analysis 3 4 5 Marouan Meddeba,b*, Nathalie Niquilc, Boutheïna Gramia,d, Kaouther Mejria,b, Matilda 6 Haraldssonc, Aurélie Chaalalic,e,f, Olivier Pringaultg, Asma Sakka Hlailia,b 7 8 aUniversité de Carthage, Faculté des Sciences de Bizerte, Laboratoire de phytoplanctonologie 9 7021 Zarzouna, Bizerte, Tunisie. -
Modeling Vitamin B1 Transfer to Consumers in the Aquatic Food Web M
www.nature.com/scientificreports OPEN Modeling vitamin B1 transfer to consumers in the aquatic food web M. J. Ejsmond 1,2, N. Blackburn3, E. Fridolfsson 2, P. Haecky3, A. Andersson4,5, M. Casini 6, A. Belgrano6,7 & S. Hylander2 Received: 10 January 2019 Vitamin B1 is an essential exogenous micronutrient for animals. Mass death and reproductive failure in Accepted: 26 June 2019 top aquatic consumers caused by vitamin B1 defciency is an emerging conservation issue in Northern Published: xx xx xxxx hemisphere aquatic ecosystems. We present for the frst time a model that identifes conditions responsible for the constrained fow of vitamin B1 from unicellular organisms to planktivorous fshes. The fow of vitamin B1 through the food web is constrained under anthropogenic pressures of increased nutrient input and, driven by climatic change, increased light attenuation by dissolved substances transported to marine coastal systems. Fishing pressure on piscivorous fsh, through increased abundance of planktivorous fsh that overexploit mesozooplankton, may further constrain vitamin B1 fow from producers to consumers. We also found that key ecological contributors to the constrained fow of vitamin B1 are a low mesozooplankton biomass, picoalgae prevailing among primary producers and low fuctuations of population numbers of planktonic organisms. Vitamin B1 (thiamin) is necessary for the proper functioning of the majority of organisms because it serves as a cofactor that associates with a number of enzymes involved in primary carbohydrate and amino acid metabo- 1 2 lism . Vitamin B1 defciency compromises mitochondrial functioning and causes nerve signaling malfunction 3 in animals . On a systemic level, low vitamin B1 levels translate into impaired health, immunosuppression and 4 reproductive failures . -
Microbial Loop' in Stratified Systems
MARINE ECOLOGY PROGRESS SERIES Vol. 59: 1-17, 1990 Published January 11 Mar. Ecol. Prog. Ser. 1 A steady-state analysis of the 'microbial loop' in stratified systems Arnold H. Taylor, Ian Joint Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PLl 3DH, United Kingdom ABSTRACT. Steady state solutions are presented for a simple model of the surface mixed layer, which contains the components of the 'microbial loop', namely phytoplankton, picophytoplankton, bacterio- plankton, microzooplankton, dissolved organic carbon, detritus, nitrate and ammonia. This system is assumed to be in equilibrium with the larger grazers present at any time, which are represented as an external mortality function. The model also allows for dissolved organic nitrogen consumption by bacteria, and self-grazing and mixotrophy of the microzooplankton. The model steady states are always stable. The solution shows a number of general properties; for example, biomass of each individual component depends only on total nitrogen concentration below the mixed layer, not whether the nitrogen is in the form of nitrate or ammonia. Standing stocks and production rates from the model are compared with summer observations from the Celtic Sea and Porcupine Sea Bight. The agreement is good and suggests that the system is often not far from equilibrium. A sensitivity analysis of the model is included. The effect of varying the mixing across the pycnocline is investigated; more intense mixing results in the large phytoplankton population increasing at the expense of picophytoplankton, micro- zooplankton and DOC. The change from phytoplankton to picophytoplankton dominance at low mixing occurs even though the same physiological parameters are used for both size fractions. -
Stoichiometric Constraints Modulate the Effects of Temperature and Nutrients on Biomass Distribution And
bioRxiv preprint doi: https://doi.org/10.1101/589895; this version posted January 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. RESEARCH ARTICLE Stoichiometric constraints modulate the effects of temperature and nutrients on biomass distribution and community stability Cite as: Sentis A, Haegeman B and Montoya J.M. (2020) Stoichiometric Arnaud Sentis1,2*, Bart Haegeman1, and José M. Montoya1 constraints modulate the effects of 1 temperature and nutrients on Centre for Biodiversity Theory and Modelling, Theoretical and Experimental biomass distribution and community Ecology Station, CNRS and Paul Sabatier University, Moulis, France. stability. bioRxiv 589895, ver. 7 peer- 2 reviewed and recommended by PCI INRAE, Aix Marseille Univ., UMR RECOVER, 3275 route Cézanne, 13182 Aix-en- Ecology. Provence, France. Posted: 28th January 2020 This article has been peer-reviewed and recommended by Recommender: Peer Community in Ecology Elisa Thébault ABSTRACT Temperature and nutrients are two of the most important drivers of global change. Reviewers: Two anonymous reviewers Both can modify the elemental composition (i.e. stoichiometry) of primary producers and consumers. Yet their combined effect on the stoichiometry, Correspondence: [email protected] dynamics, and stability of ecological communities remains largely unexplored. To fill this gap, we extended the Rosenzweig-MacArthur consumer-resource model by including thermal dependencies, nutrient dynamics, and stoichiometric constraints on both the primary producer and the consumer. We found that stoichiometric constraints dampen the paradox of enrichment and increased persistence at high nutrient levels. -
Towards an Integration of Ecological Stoichiometry and the Metabolic Theory of Ecology to Better Understand Nutrient Cycling
Ecology Letters, (2009) 12: 369–384 doi: 10.1111/j.1461-0248.2009.01302.x IDEA AND PERSPECTIVE Towards an integration of ecological stoichiometry and the metabolic theory of ecology to better understand nutrient cycling Abstract Andrew P. Allen1* and James Ecologists have long recognized that species are sustained by the flux, storage and F. Gillooly2 turnover of two biological currencies: energy, which fuels biological metabolism and 1Department of Biological materials (i.e. chemical elements), which are used to construct biomass. Ecological Sciences, Macquarie University, theories often describe the dynamics of populations, communities and ecosystems in Sydney, NSW 2109, Australia terms of either energy (e.g. population-dynamics theory) or materials (e.g. resource- 2 Department of Zoology, competition theory). These two classes of theory have been formulated using different University of Florida, 223 assumptions, and yield distinct, but often complementary predictions for the same or Bartram Hall, P.O. Box 118525, similar phenomena. For example, the energy-based equation of von Bertalanffy and the Gainesville, FL 32611, USA *Correspondence: E-mail: nutrient-based equation of Droop both describe growth. Yet, there is relatively little [email protected] theoretical understanding of how these two distinct classes of theory, and the currencies they use, are interrelated. Here, we begin to address this issue by integrating models and concepts from two rapidly developing theories, the metabolic theory of ecology and ecological stoichiometry theory. We show how combining these theories, using recently published theory and data along with new theoretical formulations, leads to novel predictions on the flux, storage and turnover of energy and materials that apply to animals, plants and unicells. -
Developments in Aquatic Microbiology
INTERNATL MICROBIOL (2000) 3: 203–211 203 © Springer-Verlag Ibérica 2000 REVIEW ARTICLE Samuel P. Meyers Developments in aquatic Department of Oceanography and Coastal Sciences, Louisiana State University, microbiology Baton Rouge, LA, USA Received 30 August 2000 Accepted 29 September 2000 Summary Major discoveries in marine microbiology over the past 4-5 decades have resulted in the recognition of bacteria as a major biomass component of marine food webs. Such discoveries include chemosynthetic activities in deep-ocean ecosystems, survival processes in oligotrophic waters, and the role of microorganisms in food webs coupled with symbiotic relationships and energy flow. Many discoveries can be attributed to innovative methodologies, including radioisotopes, immunofluores- cent-epifluorescent analysis, and flow cytometry. The latter has shown the key role of marine viruses in marine system energetics. Studies of the components of the “microbial loop” have shown the significance of various phagotrophic processes involved in grazing by microinvertebrates. Microbial activities and dissolved organic carbon are closely coupled with the dynamics of fluctuating water masses. New biotechnological approaches and the use of molecular biology techniques still provide new and relevant information on the role of microorganisms in oceanic and estuarine environments. International interdisciplinary studies have explored ecological aspects of marine microorganisms and their significance in biocomplexity. Studies on the Correspondence to: origins of both life and ecosystems now focus on microbiological processes in the Louisiana State University Station. marine environment. This paper describes earlier and recent discoveries in marine Post Office Box 19090-A. Baton Rouge, LA 70893. USA (aquatic) microbiology and the trends for future work, emphasizing improvements Tel.: +1-225-3885180 in methodology as major catalysts for the progress of this broadly-based field. -
Stoichiometry and Planktonic Grazer Composition Over Gradients of Light, Nutrients, and Predation Risk
Ecology, 85(8), 2004, pp. 2291±2301 q 2004 by the Ecological Society of America STOICHIOMETRY AND PLANKTONIC GRAZER COMPOSITION OVER GRADIENTS OF LIGHT, NUTRIENTS, AND PREDATION RISK SPENCER R. HALL,1,3 MATHEW A. LEIBOLD,1,4 DAVID A. LYTLE,1,5 AND VAL H. SMITH2 1Department of Ecology and Evolution, University of Chicago, 1101 E. 57th Street Chicago, Illinois 60637 USA 2Program in Ecology and Population Biology, Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas 66045 USA Abstract. Mechanisms that explain shifts in species composition over environmental gradients continue to intrigue ecologists. Ecological stoichiometry has recently provided a new potential mechanism linking resource (light and nutrient) supply gradients to grazer performance via elemental food-quality mechanisms. More speci®cally, it predicts that light and nutrient gradients should determine the relative dominance of P-rich taxa, such as Daphnia, in grazer assemblages. We tested this hypothesis in pond mesocosms (cattle tanks) by creating gradients of resource supply and predation risk, to which we added diverse assemblages of algal producer and zooplankton grazer species. We then characterized the end-point composition of grazer assemblages and quantity and elemental food quality of edible algae. We found that somatically P-rich Daphnia only dominated grazer assemblages in high-nutrient, no-predator treatments. In these ecosystems, P sequestered in producers exceeded a critical concentration. However, other grazers having even higher body P content did not respond similarly. These grazers were often abundant in low-nutrient environments with poorer food quality. At face value, this result is problematic for ecological stoichi- ometry because body composition did not correctly predict response of these other species. -
Inverse Model Analysis of Plankton Food Webs in the North Atlantic and Western Antarctic Peninsula
W&M ScholarWorks Dissertations, Theses, and Masters Projects Theses, Dissertations, & Master Projects 2003 Inverse Model Analysis of Plankton Food Webs in the North Atlantic and Western Antarctic Peninsula Robert M. Daniels College of William and Mary - Virginia Institute of Marine Science Follow this and additional works at: https://scholarworks.wm.edu/etd Part of the Marine Biology Commons, and the Oceanography Commons Recommended Citation Daniels, Robert M., "Inverse Model Analysis of Plankton Food Webs in the North Atlantic and Western Antarctic Peninsula" (2003). Dissertations, Theses, and Masters Projects. Paper 1539617808. https://dx.doi.org/doi:10.25773/v5-605c-ty45 This Thesis is brought to you for free and open access by the Theses, Dissertations, & Master Projects at W&M ScholarWorks. It has been accepted for inclusion in Dissertations, Theses, and Masters Projects by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Inverse Model Analysis of Plankton Food Webs in the North Atlantic and Western Antarctic Peninsula A Thesis Presented to The Faculty of the School of Marine Science The College of William and Mary in Virginia In Partial Fulfillment Of the Requirement for the Degree of Master of Science by Robert M. Daniels 2003 TABLE OF CONTENTS Page Acknowledgements ........................................................................................................................v List of Tables .................................................................................................................................vi -
Controls and Structure of the Microbial Loop
Controls and Structure of the Microbial Loop A symposium organized by the Microbial Oceanography summer course sponsored by the Agouron Foundation Saturday, July 1, 2006 Asia Room, East-West Center, University of Hawaii Symposium Speakers: Peter J. leB Williams (University of Bangor, Wales) David L. Kirchman (University of Delaware) Daniel J. Repeta (Woods Hole Oceanographic Institute) Grieg Steward (University of Hawaii) The oceans constitute the largest ecosystems on the planet, comprising more than 70% of the surface area and nearly 99% of the livable space on Earth. Life in the oceans is dominated by microbes; these small, singled-celled organisms constitute the base of the marine food web and catalyze the transformation of energy and matter in the sea. The microbial loop describes the dynamics of microbial food webs, with bacteria consuming non-living organic matter and converting this energy and matter into living biomass. Consumption of bacteria by predation recycles organic matter back into the marine food web. The speakers of this symposium will explore the processes that control the structure and functioning of microbial food webs and address some of these fundamental questions: What aspects of microbial activity do we need to measure to constrain energy and material flow into and out of the microbial loop? Are we able to measure bacterioplankton dynamics (biomass, growth, production, respiration) well enough to edu/agouroninstitutecourse understand the contribution of the microbial loop to marine systems? What factors control the flow of material and energy into and out of the microbial loop? At what scales (space and time) do we need to measure processes controlling the growth and metabolism of microorganisms? How does our knowledge of microbial community structure and diversity influence our understanding of the function of the microbial loop? Program: 9:00 am Welcome and Introductory Remarks followed by: Peter J. -
History and Trends in Ecological Stoichiometry Research from 1992 to 2019: a Scientometric Analysis
sustainability Review History and Trends in Ecological Stoichiometry Research from 1992 to 2019: A Scientometric Analysis Hailiang Li 1,* , M. James C. Crabbe 2,3,4 and Haikui Chen 5 1 College of Resources and Environmental Sciences, Gansu Agricultural University, Lanzhou 730070, China 2 Wolfson College, Oxford University, Oxford OX2 6UD, UK; [email protected] 3 Institute of Biomedical and Environmental Science & Technology, University of Bedfordshire, Luton LU1 3JU, UK 4 School of Life Sciences, Shanxi University, Taiyuan 030006, China 5 School of Biological Science and Engineering, North Minzu University, Yinchuan 750021, China; [email protected] * Correspondence: [email protected] Received: 26 September 2020; Accepted: 23 October 2020; Published: 27 October 2020 Abstract: Ecological stoichiometry (ES), as an ecological theory, provides a framework for studying various ecological processes, and it has been applied successfully in fields ranging from nutrient dynamics to biogeochemical cycling. Through the application of ES theory, researchers are beginning to understand many diverse ecological topics. The aim of this paper was to identify the main characteristics of ES, especially to clarify the evolution, and potential trends of this field for future ecological studies. We used CiteSpace software to conduct a bibliometric review of ES research publications from 1992 to 2019 extracted from the Web of Science. The results showed that the United States has been a major contributor to this field; approximately half of the top 15 academic institutions contributing to ES research were in the United States. Although the largest number of publications on ES were from China, the impact of these academic papers has thus far been less than that of the papers from other countries. -
A New Modeling Approach to Define Marine Ecosystems Food-Web Status
A new modeling approach to define marine ecosystems food-web status with uncertainty assessment Aurélie Chaalali, Blanche Saint-Béat, Géraldine Lassalle, François Le Loc’h, Samuele Tecchio, Georges Safi, Claude Savenkoff, Jérémy Lobry, Nathalie Niquil To cite this version: Aurélie Chaalali, Blanche Saint-Béat, Géraldine Lassalle, François Le Loc’h, Samuele Tecchio, et al.. A new modeling approach to define marine ecosystems food-web status with uncertainty as- sessment. Progress in Oceanography, Elsevier, 2015, 135, pp.37-47. 10.1016/j.pocean.2015.03.012. hal-01158158 HAL Id: hal-01158158 https://hal.archives-ouvertes.fr/hal-01158158 Submitted on 29 May 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A new modeling approach to define marine ecosystems food-web status with uncertainty assessment Aurélie Chaalali1*, Blanche Saint-Béat1, 2, Géraldine Lassalle3, François Le Loc’h4, Samuele Tecchio1, Georges Safi1, Claude Savenkoff5, Jérémy Lobry3, Nathalie Niquil1. 1Unité Mixte de Recherche Biologie des ORganismes et Ecosystèmes Aquatiques (BOREA), -
01 Delong 2-8 6/9/05 8:58 AM Page 2
01 Delong 2-8 6/9/05 8:58 AM Page 2 INSIGHT REVIEW NATURE|Vol 437|15 September 2005|doi:10.1038/nature04157 Genomic perspectives in microbial oceanography Edward F. DeLong1 and David M. Karl2 The global ocean is an integrated living system where energy and matter transformations are governed by interdependent physical, chemical and biotic processes. Although the fundamentals of ocean physics and chemistry are well established, comprehensive approaches to describing and interpreting oceanic microbial diversity and processes are only now emerging. In particular, the application of genomics to problems in microbial oceanography is significantly expanding our understanding of marine microbial evolution, metabolism and ecology. Integration of these new genome-enabled insights into the broader framework of ocean science represents one of the great contemporary challenges for microbial oceanographers. Marine ecosystems are complex and dynamic. A mechanistic under- greatly aid in these efforts. The correlation between organism- and habi- standing of the susceptibility of marine ecosystems to global environ- tat-specific genomic features and other physical, chemical and biotic mental variability and climate change driven by greenhouse gases will variables has the potential to refine our understanding of microbial and require a comprehensive description of several factors. These include biogeochemical process in ocean systems. marine physical, chemical and biological interactions including All these advances — improved cultivation, environmental genomic thresholds, negative and positive feedback mechanisms and other approaches and in situ microbial observatories — promise to enhance nonlinear interactions. The fluxes of matter and energy, and the our understanding of the living ocean system. Below, we provide a brief microbes that mediate them, are of central importance in the ocean, recent history of marine microbiology and outline some of the recent yet remain poorly understood.