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The Green Puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New Generic and Species Concept Among This Widely Distributed Genus
Phytotaxa 441 (2): 113–142 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.441.2.2 The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus THOMAS PRÖSCHOLD1,3* & TATYANA DARIENKO2,4 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D-37073 Göttingen, Germany 3 [email protected]; http://orcid.org/0000-0002-7858-0434 4 [email protected]; http://orcid.org/0000-0002-1957-0076 *Correspondence author Abstract Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchy- matous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary struc- ture of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Universidade Federal Do Pampa Campus São Gabriel Programa De Pós-Graduação Em Ciências Biológicas
UNIVERSIDADE FEDERAL DO PAMPA CAMPUS SÃO GABRIEL PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS SÃO GABRIEL 2015 EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS Dissertação apresentada ao Programa de Pós- Graduação Stricto Sensu em Ciências Biológicas da Universidade Federal do Pampa, como requisito parcial para obtenção do Título de Mestre em Ciências Biológicas. Orientador: Prof. Dr. Paulo Marcos Pinto Coorientador: Dr. Gabriel da Luz Wallau São Gabriel 2015 II EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS Dissertação apresentada ao Programa de Pós- Graduação Stricto Sensu em Ciências Biológicas da Universidade Federal do Pampa, como requisito parcial para obtenção do Título de Mestre em Ciências Biológicas. Dissertação defendida e aprovada em 19 de Maio de 2015. Banca examinadora: ______________________________________________________ Prof. Dr. Paulo Marcos Pinto Orientador - UNIPAMPA ______________________________________________________ Profª. Drª. Alessandra Loureiro Morassutti Membro Titular - PUCRS ______________________________________________________ Prof. Dr. Valdir Marcos Stefenon Membro Titular - UNIPAMPA III À meu pai, Evaldo Carvalho, por me ensinar a jamais desistir dos meus objetivos, por mais árduo que seja o caminho. IV AGRADECIMENTOS Agradeço primeiramente aos meus pais Evaldo e Indiara, pelo incentivo constante, pela confiança depositada, por todo o afeto e amor. Sou e serei eternamente grata pelo exemplo que são em minha vida. Palavras apenas não são seriam suficientes para expressar a admiração, o amor e a gratidão que sinto. Amo vocês incondicionalmente! Aos meus avós José Carlos e Elisa, pelo apoio constante, de todas as formas. -
Morphology Taxonomy and Phylogeny Life History
Charophyceae - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/charophyceae/125700 (http://www.accessscience.com/) Article by: Chapman, Russell L. Department of Botany, Louisiana State University, Baton Rouge, Louisiana. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.125700 (http://dx.doi.org/10.1036/1097-8542.125700) Content Morphology Life history Bibliography Taxonomy and phylogeny Fossils Additional Readings A group of branched, filamentous green algae, commonly known as the stoneworts, brittleworts, or muskgrasses, that occur mostly in fresh- or brackish-water habitats. They are important as significant components of the aquatic flora in some locales, providing food for waterfowl and protection for fish and other aquatic fauna; as excellent model systems for cell biological research; and as a unique group of green algae thought to be more closely related to the land plants. Morphology Charophytes are multicellular, branched, macroscopic filaments from a few inches to several feet in length. Colorless rhizoidal filaments anchor the plants to lake bottoms and other substrates. The main filaments are organized into short nodes forming whorls of branches, and much longer (up to 6 in. or 15 cm) internodal cells. The general morphology varies with environmental conditions such as depth of the water, light levels, and amount of wave action. Reproductive structures occur at the nodes and consist of egg cell–containing structures, the nucules, and sperm cell–containing structures called globules. The biflagellated sperm cells are produced in antheridial filaments within the globules. In many charophytes, calicium carbonate (lime) is secreted on the cell walls, hence the name stoneworts or brittleworts. -
Bacterial and Eukaryotic Biodiversity Patterns in Terrestrial and Aquatic
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Open Marine Archive FEMS Microbiology Ecology, 92, 2016, fiw041 doi: 10.1093/femsec/fiw041 Advance Access Publication Date: 2 March 2016 Research Article RESEARCH ARTICLE Bacterial and eukaryotic biodiversity patterns in terrestrial and aquatic habitats in the Sør Rondane Mountains, Dronning Maud Land, East Antarctica Dagmar Obbels1,†,∗, Elie Verleyen1,†,Marie-JoseMano´ 2, Zorigto Namsaraev2,3,4, Maxime Sweetlove1,BjornTytgat5, Rafael Fernandez-Carazo2, Aaike De Wever1,6, Sofie D’hondt1, Damien Ertz7,8, Josef Elster9, Koen Sabbe1, Anne Willems5, Annick Wilmotte2 and Wim Vyverman1 1Laboratory of Protistology and Aquatic Ecology, Department of Biology, Ghent University, Krijgslaan 281, S8, B-9000 Ghent, Belgium, 2Centre for Protein Engineering, Institute of Chemistry, UniversitedeLi´ ege,` Sart-TilmanB6, B-4000 Liege,` Belgium, 3Winogradsky Institute of Microbiology RAS, Pr-t 60-letya Oktyabrya, 7/2, Moscow 117312, Russia, 4NRC Kurchatov Institute, Akademika Kurchatova pl. 1, Moscow, 12 31 82, Russia, 5Laboratory for Microbiology, Department of Biochemistry and Microbiology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium, 6Operational Directorate Natural Environment, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium, 7Botanic Garden Meise, Department Bryophytes-Thallophytes, Nieuwelaan 38, B-1860 Meise, Belgium, 8Federation Wallonia-Brussels, General Administration of the Non-Compulsory Education and Scientific Research, Rue A. Lavallee´ 1, 1080 Brussels, Belgium and 9Centre for Polar Ecology, Faculty of Sciences, University of South Bohemia, Institute of Botany, Academy of Sciences of the Czech Republic, Dukelska´ 135, 379 82, Treboˇ n,ˇ Czech republic ∗Corresponding author: Department of Biology, Ghent University, Krijgslaan 281, S8, 9000 Gent, Ghent, 9000, Belgium. -
Systematics of Coccal Green Algae of the Classes Chlorophyceae and Trebouxiophyceae
School of Doctoral Studies in Biological Sciences University of South Bohemia in České Budějovice Faculty of Science SYSTEMATICS OF COCCAL GREEN ALGAE OF THE CLASSES CHLOROPHYCEAE AND TREBOUXIOPHYCEAE Ph.D. Thesis Mgr. Lenka Štenclová Supervisor: Doc. RNDr. Jan Kaštovský, Ph.D. University of South Bohemia in České Budějovice České Budějovice 2020 This thesis should be cited as: Štenclová L., 2020: Systematics of coccal green algae of the classes Chlorophyceae and Trebouxiophyceae. Ph.D. Thesis Series, No. 20. University of South Bohemia, Faculty of Science, School of Doctoral Studies in Biological Sciences, České Budějovice, Czech Republic, 239 pp. Annotation Aim of the review part is to summarize a current situation in the systematics of the green coccal algae, which were traditionally assembled in only one order: Chlorococcales. Their distribution into the lower taxonomical unites (suborders, families, subfamilies, genera) was based on the classic morphological criteria as shape of the cell and characteristics of the colony. Introduction of molecular methods caused radical changes in our insight to the system of green (not only coccal) algae and green coccal algae were redistributed in two of newly described classes: Chlorophyceae a Trebouxiophyceae. Representatives of individual morphologically delimited families, subfamilies and even genera and species were commonly split in several lineages, often in both of mentioned classes. For the practical part, was chosen two problematical groups of green coccal algae: family Oocystaceae and family Scenedesmaceae - specifically its subfamily Crucigenioideae, which were revised using polyphasic approach. Based on the molecular phylogeny, relevance of some old traditional morphological traits was reevaluated and replaced by newly defined significant characteristics. -
Polyols and UV‐Sunscreens in the Prasiola‐Clade (Trebouxiophyceae
J. Phycol. 54, 264–274 (2018) © 2018 The Authors Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. DOI: 10.1111/jpy.12619 POLYOLS AND UV-SUNSCREENS IN THE PRASIOLA-CLADE (TREBOUXIOPHYCEAE, CHLOROPHYTA) AS METABOLITES FOR STRESS RESPONSE AND CHEMOTAXONOMY1 Vivien Hotter, Karin Glaser Institute of Biological Sciences, Applied Ecology and Phycology, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany Anja Hartmann, Markus Ganzera Institute of Pharmacy, Pharmacognosy, University of Innsbruck, Innrain 80-82/IV, A-6020 Innsbruck, Austria and Ulf Karsten 2 Institute of Biological Sciences, Applied Ecology and Phycology, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany In many regions of the world, aeroterrestrial green algae of the Trebouxiophyceae (Chlorophyta) In contrast to their aquatic relatives, aeroterres- represent very abundant soil microorganisms, and trial algae are directly exposed to the atmosphere hence their taxonomy is crucial to investigate their and thereby subject to harsh environmental condi- physiological performance and ecological impor- tions, such as strong diurnal and seasonal changes tance. Due to a lack in morphological features, of ultraviolet radiation (UVR; Hartmann et al. taxonomic and phylogenetic studies of Treboux- -
Phylogeny and Molecular Evolution of the Green Algae
Phylogeny and molecular evolution of the green algae Frédérik Leliaert, David Smith, Hervé Moreau, Matthew Herron, Heroen Verbruggen, Charles Delwiche, Olivier de Clerck To cite this version: Frédérik Leliaert, David Smith, Hervé Moreau, Matthew Herron, Heroen Verbruggen, et al.. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences, 2012, 31 (1), pp.1-46. 10.1080/07352689.2011.615705. hal-01590252 HAL Id: hal-01590252 https://hal.archives-ouvertes.fr/hal-01590252 Submitted on 19 Sep 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. postprint Leliaert, F., Smith, D.R., Moreau, H., Herron, M.D., Verbruggen, H., Delwiche, C.F., De Clerck, O., 2012. Phylogeny and molecular evolution of the green algae. Critical Reviews in Plant Sciences 31: 1-46. doi:10.1080/07352689.2011.615705 Phylogeny and Molecular Evolution of the Green Algae Frederik Leliaert1, David R. Smith2, Hervé Moreau3, Matthew Herron4, Heroen Verbruggen1, Charles F. Delwiche5, Olivier De Clerck1 1 Phycology Research Group, Biology Department, Ghent -
Phylogeny and Molecular Evolution of the Green Algae
Critical Reviews in Plant Sciences, 31:1–46, 2012 Copyright C Taylor & Francis Group, LLC ISSN: 0735-2689 print / 1549-7836 online DOI: 10.1080/07352689.2011.615705 Phylogeny and Molecular Evolution of the Green Algae Frederik Leliaert,1 David R. Smith,2 HerveMoreau,´ 3 Matthew D. Herron,4 Heroen Verbruggen,1 Charles F. Delwiche,5 and Olivier De Clerck1 1Phycology Research Group, Biology Department, Ghent University 9000, Ghent, Belgium 2Canadian Institute for Advanced Research, Evolutionary Biology Program, Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada 3Observatoire Oceanologique,´ CNRS–Universite´ Pierre et Marie Curie 66651, Banyuls sur Mer, France 4Department of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada 5Department of Cell Biology and Molecular Genetics and the Maryland Agricultural Experiment Station, University of Maryland, College Park, MD 20742, USA Table of Contents I. THE NATURE AND ORIGINS OF GREEN ALGAE AND LAND PLANTS .............................................................................2 II. GREEN LINEAGE RELATIONSHIPS ..........................................................................................................................................................5 A. Morphology, Ultrastructure and Molecules ...............................................................................................................................................5 B. Phylogeny of the Green Lineage ...................................................................................................................................................................6 -
An Evaluation of Rbcl, Tufa, UPA, LSU and ITS As DNA Barcode Markers
487_528_SAUNDERS.fm Page 487 Vendredi, 17. décembre 2010 11:21 11 Cryptogamie, Algologie, 2010, 31 (4): 487-528 ©2010 Adac. Tous droits réservés An evaluation of rbcL, tufA,UPA, LSU and ITS as DNA barcode markers for the marine green macroalgae Gary W. SAUNDERS* &Hana KUCERA Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick, Fredericton, NB E3B 5A3 Canada Abstract —The universality and species discriminatory power of the plastid rubisco large subunit (rbcL) (considering 5’ and 3’ fragments independently), elongation factor tufA,and universal amplicon (UPA), and the nuclear D2/D3 region of the large ribosomal subunit (LSU) and the internal transcribed spacer of the ribosomal cistron (ITS) were evaluated for their utility as DNA barcode markers for green macroalgae. Excepting low success for ITS, all of these markers failed for the Cladophoraceae. For the remaining taxa, the 3’ region of the rbcL(rbcL-3P) and tufA had the largest barcode gaps (difference between maximum intra- and minimum inter-specific divergence). Unfortunately, moderate amplification success (80 %excluding Cladophoracae) caused, at least in part, by the presence of introns within the rbcL-3P for some taxa reduced the utility of this marker as auniversal barcode system. The tufA marker, on the other hand, had strong amplification success (95% excluding the Cladophoraceae) and no introns were uncovered. We thus recommend that tufA be adopted as the standard marker for the routine barcoding of green marine macroalgae (excluding the Cladophoraceae). During this survey we discovered cryptic species in Acrosiphonia, Monostroma,and Ulva indicating that significant taxonomic work remains for green macroalgae. -
Rindi Et Al. 2004.Pdf
J. Phycol. 40, 977–997 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.04012.x THE PRASIOLALES (CHLOROPHYTA) OF ATLANTIC EUROPE: AN ASSESSMENT BASED ON MORPHOLOGICAL, MOLECULAR, AND ECOLOGICAL DATA, INCLUDING THE CHARACTERIZATION OF ROSENVINGIELLA RADICANS (KU¨ TZING) COMB. NOV.1 Fabio Rindi, Lynne McIvor2, and Michael D. Guiry3 Department of Botany, Martin Ryan Institute, National University of Ireland, Galway, Ireland Despite a simple morphology and intensive stud- The Prasiolales is an order of marine, freshwater, ies carried out for more than two centuries, the sys- and terrestrial green algae widespread in polar and tematics of the Prasiolales still presents several cold temperate regions (Burrows 1991, Sherwood unsolved problems. The taxonomic relationships et al. 2000), characterized by a stellate axial chlorop- of several common species of Prasiolales, mostly last with a central pyrenoid, flagellate cells with four from northern Europe, were investigated by a com- microtubular roots in a cruciate arrangement and an- bination of morphological observations, culture ex- ticlockwise rotation of basal bodies, closed mitosis with periments, and molecular analyses based on rbcL a persistent telophase spindle, and cytokinesis by trans- sequences. The results indicate that Rosenvingiella verse wall deposition (O’Kelly et al. 1989, van den and Prasiola are separate genera. The capacity for Hoek et al. 1995, Sherwood et al. 2000). Its phyloge- production of tridimensional pluriseriate game- netic affinities are not yet completely clear, but recent tangia and the presence of unicellular rhizoids are molecular evidence indicates that the Trebouxiophy- the morphological features that discriminate Rose- ceae is the class to which the Prasiolales is most closely nvingiella from filamentous forms of Prasiola. -
Biodiversity of the Epiphyllous Algae in a Chamaecyparis Forest of Northern Taiwan
Botanical Studies (2012) 53: 489-499. PHYLOGENETICS Biodiversity of the epiphyllous algae in a Chamaecyparis forest of northern Taiwan Ching-Su LIN1, Yu-Hsin LIN1, and Jiunn-Tzong WU1,2,* 1Institute of Ecology and Evolutionary Biology, National Taiwan University, Taipei 10660, Taiwan 2Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan (Received March 5, 2012; Accepted June 15, 2012) ABSTRACT. Yellow cypress, Chamaecyparis obtusa var. formosana, is a relic species and one of the most important trees in Taiwan. This is the first study of the epiphyllous algae in a yellow cypress forest. The for- est surrounding Yuan-Yang Lake (YYL) in northern Taiwan was chosen for this study. Algal samples collected from leaves and trunks were isolated and cultivated under laboratory conditions. The species were identified with the aid of 23S rDNA sequence analysis. Six species of green algae, including Chloroidium saccharophi- lum, Ettlia pseudoalveolaris, Klebsormidium flaccidum, Prasiococcus calcarius, Rosenvingiella radicans and Trebouxia sp., and one cyanobacterial species, Leptolyngbya sp., were identified in the forest. This is the first instance of any of them being reported in Taiwan. On yellow cypress leaves, four coccoid species, namely C. saccharophilum, E. pseudoalveolaris, P. calcarius, and R. radicans were found. On broadleaf trees, in con- trast, both the filamentous species, Leptolyngbya sp. and K. flaccidum, and the coccoid species were identified. However, there is no strong host-specificity for these epiphyllous algae. The influence of environmental fac- tors on the microhabitat, distribution and population size of epiphyllous algae in the forest is discussed here. Keywords: Biodiversity; Chamaecyparis; Environmental factor; Epiphyllous algae; Yuan-Yang Lake; Yellow cypress forest.