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Mycosporine-Like Amino Acids (Maas) in Time-Series of Lichen Specimens from Natural History Collections
molecules Article Mycosporine-Like Amino Acids (MAAs) in Time-Series of Lichen Specimens from Natural History Collections Marylène Chollet-Krugler 1, Thi Thu Tram Nguyen 1,2 , Aurelie Sauvager 1, Holger Thüs 3,4,* and Joël Boustie 1,* 1 CNRS, ISCR (Institut des Sciences Chimiques de Rennes)-UMR 6226, Univ Rennes, F-35000 Rennes, France; [email protected] (M.C.-K.); [email protected] (T.T.T.N.); [email protected] (A.S.) 2 Department of Chemistry, Faculty of Science, Can Tho University of Medicine and Pharmacy, 179 Nguyen Van Cu Street, An Khanh, Ninh Kieu, Can Tho, 902495 Vietnam 3 State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany 4 The Natural History Museum London, Cromwell Rd, Kensington, London SW7 5BD, UK * Correspondence: [email protected] (H.T.); [email protected] (J.B.) Academic Editors: Sophie Tomasi and Joël Boustie Received: 12 February 2019; Accepted: 16 March 2019; Published: 19 March 2019 Abstract: Mycosporine-like amino acids (MAAs) were quantified in fresh and preserved material of the chlorolichen Dermatocarpon luridum var. luridum (Verrucariaceae/Ascomycota). The analyzed samples represented a time-series of over 150 years. An HPLC coupled with a diode array detector (HPLC-DAD) in hydrophilic interaction liquid chromatography (HILIC) mode method was developed and validated for the quantitative determination of MAAs. We found evidence for substance specific differences in the quality of preservation of two MAAs (mycosporine glutamicol, mycosporine glutaminol) in Natural History Collections. We found no change in average mycosporine glutamicol concentrations over time. Mycosporine glutaminol concentrations instead decreased rapidly with no trace of this substance detectable in collections older than nine years. -
The Hawaiian Freshwater Algae Biodiversity Survey
Sherwood et al. BMC Ecology 2014, 14:28 http://www.biomedcentral.com/1472-6785/14/28 RESEARCH ARTICLE Open Access The Hawaiian freshwater algae biodiversity survey (2009–2014): systematic and biogeographic trends with an emphasis on the macroalgae Alison R Sherwood1*, Amy L Carlile1,2, Jessica M Neumann1, J Patrick Kociolek3, Jeffrey R Johansen4, Rex L Lowe5, Kimberly Y Conklin1 and Gernot G Presting6 Abstract Background: A remarkable range of environmental conditions is present in the Hawaiian Islands due to their gradients of elevation, rainfall and island age. Despite being well known as a location for the study of evolutionary processes and island biogeography, little is known about the composition of the non-marine algal flora of the archipelago, its degree of endemism, or affinities with other floras. We conducted a biodiversity survey of the non-marine macroalgae of the six largest main Hawaiian Islands using molecular and microscopic assessment techniques. We aimed to evaluate whether endemism or cosmopolitanism better explain freshwater algal distribution patterns, and provide a baseline data set for monitoring future biodiversity changes in the Hawaiian Islands. Results: 1,786 aquatic and terrestrial habitats and 1,407 distinct collections of non-marine macroalgae were collected from the islands of Kauai, Oahu, Molokai, Maui, Lanai and Hawaii from the years 2009–2014. Targeted habitats included streams, wet walls, high elevation bogs, taro fields, ditches and flumes, lakes/reservoirs, cave walls and terrestrial areas. Sites that lacked freshwater macroalgae were typically terrestrial or wet wall habitats that were sampled for diatoms and other microalgae. Approximately 50% of the identifications were of green algae, with lesser proportions of diatoms, red algae, cyanobacteria, xanthophytes and euglenoids. -
DOMINANCE of TARDIGRADA in ASSOCIATED FAUNA of TERRESTRIAL MACROALGAE Prasiola Crispa (CHLOROPHYTA: PRASIOLACEAE) from a PENGUIN
14 DOMINANCE OF TARDIGRADA IN ASSOCIATED FAUNA OF TERRESTRIAL MACROALGAE Prasiola crispa (CHLOROPHYTA: PRASIOLACEAE) FROM A PENGUIN ROOKERY NEAR ARCTOWSKI STATION (KING GEORGE ISLAND, SOUTH SHETLAND ISLANDS, MARITIME ANTARCTICA) http://dx.doi.org/10.4322/apa.2014.083 Adriana Galindo Dalto1,*, Geyze Magalhães de Faria1, Tais Maria de Souza Campos1, Yocie Yoneshigue Valentin1 1Laboratório de Macroalgas Marinhas, Instituto de Biologia, Universidade Federal do Rio de Janeiro – UFRJ, Av. Carlos Chagas Filho, 373, sala A1-94, Centro de Ciências da Saúde, Ilha do Fundão, CEP 21941-902, Rio de Janeiro, RJ, Brazil *e-mail: [email protected] Abstract: Tardigrada are among the microinvertebrates commonly associated to terrestrial vegetation, especially in extreme environments such as Antarctica. In the austral summer 2010/2011, Tardigrada were found in high densities on Prasiola crispa sampled at penguin rookeries from Arctowski Station area (King George Island). Taxonomic identi cations performed to date suggest that the genus Ramazzottius is the dominant taxa on P. crispa. is genus has been reported for West Antarctica and Sub-Antarctic Region. In this context, the present work intends to contribute to the knowledge of the terrestrial invertebrate fauna associated to P. crispa of the ice-free areas around Admiralty Bay. Keywords: microinvertebrates, terrestrial macroalgae, tardigrada, Ramazzottius Introduction Tardigrada are micrometazoans (average 250-500 µm) that Antarctic Tardigrada were at the beginning described present a large distribution in variety of diverse habitats, from by Murray (1906) and Richters (1908) (apud Convey & rain forests to arid polar environments, including nunataks McInnes, 2005), a er species lists of Antarctic Tardigrada and mountain tops to abyssal plains of the oceanic regions were prepared by Morikawa (1962), Sudzuki (1964), (Brusca & Brusca, 2007; McInnes, 2010a). -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
The Green Puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New Generic and Species Concept Among This Widely Distributed Genus
Phytotaxa 441 (2): 113–142 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.441.2.2 The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus THOMAS PRÖSCHOLD1,3* & TATYANA DARIENKO2,4 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D-37073 Göttingen, Germany 3 [email protected]; http://orcid.org/0000-0002-7858-0434 4 [email protected]; http://orcid.org/0000-0002-1957-0076 *Correspondence author Abstract Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchy- matous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary struc- ture of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. -
Composition and Distribution of Subaerial Algal Assemblages in Galway City, Western Ireland
Cryptogamie, Algol., 2003, 24 (3): 245-267 © 2003 Adac. Tous droits réservés Composition and distribution of subaerial algal assemblages in Galway City, western Ireland Fabio RINDI* and Michael D. GUIRY Department of Botany, Martin Ryan Institute, National University of Ireland, Galway, Ireland (Received 5 October 2002, accepted 26 March 2003) Abstract – The subaerial algal assemblages of Galway City, western Ireland, were studied by examination of field collections and culture observations; four main types of assem- blages were identified. The blue-green assemblage was the most common on stone and cement walls; it was particularly well-developed at sites characterised by poor water drainage. Gloeocapsa alpina and other species of Gloeocapsa with coloured envelopes were the most common forms; Tolypothrix byssoidea and Nostoc microscopicum were also found frequently. The Trentepohlia assemblage occurred also on walls; it was usually produced by large growths of Trentepohlia iolithus, mainly on concrete. Trentepohlia cf. umbrina and Printzina lagenifera were less common and occurred on different substrata. The prasio- lalean assemblage was the community usually found at humid sites at the basis of many walls and corners. Rosenvingiella polyrhiza, Prasiola calophylla and Phormidium autumnale were the most common entities; Klebsormidium flaccidum and Prasiola crispa were locally abundant at some sites. The Desmococcus assemblage was represented by green growths at the basis of many trees and electric-light poles and less frequently occurred at the bases of walls. Desmococcus olivaceus was the dominant form, sometimes with Chlorella ellipsoidea. Trebouxia cf. arboricola, Apatococcus lobatus and Trentepohlia abietina were the most common corticolous algae. Fifty-one subaerial algae were recorded; most did not exhibit any obvious substratum preference, the Trentepohliaceae being the only remarkable excep- tion. -
Supplementary Information the Biodiversity and Geochemistry Of
Supplementary Information The Biodiversity and Geochemistry of Cryoconite Holes in Queen Maud Land, East Antarctica Figure S1. Principal component analysis of the bacterial OTUs. Samples cluster according to habitats. Figure S2. Principal component analysis of the eukaryotic OTUs. Samples cluster according to habitats. Figure S3. Principal component analysis of selected trace elements that cause the separation (primarily Zr, Ba and Sr). Figure S4. Partial canonical correspondence analysis of the bacterial abundances and all non-collinear environmental variables (i.e., after identification and exclusion of redundant predictor variables) and without spatial effects. Samples from Lake 3 in Utsteinen clustered with higher nitrate concentration and samples from Dubois with a higher TC abundance. Otherwise no clear trends could be observed. Table S1. Number of sequences before and after quality control for bacterial and eukaryotic sequences, respectively. 16S 18S Sample ID Before quality After quality Before quality After quality filtering filtering filtering filtering PES17_36 79285 71418 112519 112201 PES17_38 115832 111434 44238 44166 PES17_39 128336 123761 31865 31789 PES17_40 107580 104609 27128 27074 PES17_42 225182 218495 103515 103323 PES17_43 219156 213095 67378 67199 PES17_47 82531 79949 60130 59998 PES17_48 123666 120275 64459 64306 PES17_49 163446 158674 126366 126115 PES17_50 107304 104667 158362 158063 PES17_51 95033 93296 - - PES17_52 113682 110463 119486 119205 PES17_53 126238 122760 72656 72461 PES17_54 120805 117807 181725 181281 PES17_55 112134 108809 146821 146408 PES17_56 193142 187986 154063 153724 PES17_59 226518 220298 32560 32444 PES17_60 186567 182136 213031 212325 PES17_61 143702 140104 155784 155222 PES17_62 104661 102291 - - PES17_63 114068 111261 101205 100998 PES17_64 101054 98423 70930 70674 PES17_65 117504 113810 192746 192282 Total 3107426 3015821 2236967 2231258 Table S2. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Lichens, Bryophytes and Terrestrial Algae of the Lake Untersee Oasis (Wohlthat Massiv, Dronning Maud Land, Antarctica)
CZECH POLAR REPORTS 10 (2): 203-225, 2020 Lichens, bryophytes and terrestrial algae of the Lake Untersee Oasis (Wohlthat Massiv, Dronning Maud Land, Antarctica) Mikhail Andreev1*, Dale Andersen2, Lyubov Kurbatova1, Svetlana Smirnova1, Olga Chaplygina1 1Komarov Botanical Institute of the Russian Academy of Sciences, Professor Popov St. 2, 197376 St. Petersburg, Russia 2Carl Sagan Center, SETI Institute, 189 Bernardo Ave., Suite 100, Mountain View, California 94043, USA Abstract Lake Untersee is the largest ice-covered freshwater lake in the interior of East Antarctica. The mountain oasis is situated around it in the Gruber Mts. of the Wohlthat Massif. For approximately 7,000 years the area has been free of ice and the local climate relatively stable. It is very severe, cold, and windy and dominated by intense evaporation and sublimation but with little melt. Relative humidity averages only 37%. Vegetation is sparse in the oasis and previously only poorly investigated. Two lichen species and no bryophytes were known from the area. In November-December 2018, a survey of terrestrial flora and vegetation was made. The list of lichens was completed for the area, bryophytes were found for the first time, and some terrestrial algae were collected. In total, 23 lichen species, 1 lichenicolous fungus, 1 moss, and 18 terrestrial algae were discovered for the locality. The abundance of each species within their habitats was also evaluated. The lichen flora of the Untersee Oasis is typical for continental oases and similar to other previously investigated internal territories of Dronning Maud Land, except for the very rich lichen flora of the Schirmacher Oasis. -
Universidade Federal Do Pampa Campus São Gabriel Programa De Pós-Graduação Em Ciências Biológicas
UNIVERSIDADE FEDERAL DO PAMPA CAMPUS SÃO GABRIEL PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS SÃO GABRIEL 2015 EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS Dissertação apresentada ao Programa de Pós- Graduação Stricto Sensu em Ciências Biológicas da Universidade Federal do Pampa, como requisito parcial para obtenção do Título de Mestre em Ciências Biológicas. Orientador: Prof. Dr. Paulo Marcos Pinto Coorientador: Dr. Gabriel da Luz Wallau São Gabriel 2015 II EVELISE LEIS CARVALHO GENOMAS ACESSÓRIOS DA ALGA ANTÁRTICA PRASIOLA CRISPA: INFERÊNCIAS ESTRUTURAIS E FILOGENÉTICAS Dissertação apresentada ao Programa de Pós- Graduação Stricto Sensu em Ciências Biológicas da Universidade Federal do Pampa, como requisito parcial para obtenção do Título de Mestre em Ciências Biológicas. Dissertação defendida e aprovada em 19 de Maio de 2015. Banca examinadora: ______________________________________________________ Prof. Dr. Paulo Marcos Pinto Orientador - UNIPAMPA ______________________________________________________ Profª. Drª. Alessandra Loureiro Morassutti Membro Titular - PUCRS ______________________________________________________ Prof. Dr. Valdir Marcos Stefenon Membro Titular - UNIPAMPA III À meu pai, Evaldo Carvalho, por me ensinar a jamais desistir dos meus objetivos, por mais árduo que seja o caminho. IV AGRADECIMENTOS Agradeço primeiramente aos meus pais Evaldo e Indiara, pelo incentivo constante, pela confiança depositada, por todo o afeto e amor. Sou e serei eternamente grata pelo exemplo que são em minha vida. Palavras apenas não são seriam suficientes para expressar a admiração, o amor e a gratidão que sinto. Amo vocês incondicionalmente! Aos meus avós José Carlos e Elisa, pelo apoio constante, de todas as formas. -
First Report of a Species of Prasiola (Chlorophyta: Prasiolaceae) from the Mediterranean Sea (Lagoon of Venice)*
sm69n3343 12/9/05 13:44 Página 343 SCI. MAR., 69 (3): 343-346 SCIENTIA MARINA 2005 First report of a species of Prasiola (Chlorophyta: Prasiolaceae) from the Mediterranean Sea (Lagoon of Venice)* CHIARA MIOTTI1, DANIELE CURIEL1, ANDREA RISMONDO1, GIORGIO BELLEMO1, CHIARA DRI1, EMILIANO CHECCHIN1 and MARA MARZOCCHI2 1 SELC pscarl, Via dell’Elettricità 3d, 30174, Venezia, Italy. E-mail: [email protected] 2 Dipartimento di Biologia, Università di Padova, Via Trieste 75, 35121 Padova, Italy. SUMMARY: A green alga belonging to the genus Prasiola, known from terrestrial, marine and freshwater habitats of polar and cold-temperate regions, is recorded for the first time in the Mediterranean Sea. In 2002, during a survey on soft substrata in the Lagoon of Venice (Italy), specimens referable to this genus were found in several areas. The morphological features of thalli are described and their occurrence in the Lagoon of Venice is discussed. Data on associated algal vegetation are also presented. Keywords: green algae, Lagoon of Venice, Mediterranean Sea, Prasiola, phytobenthos RESUMEN: PRIMERA CITA DE UNA ESPECIE DE PRASIOLA (CHLOROPHYTA: PRASIOLACEAE) PARA EL MAR MEDITERRÁNEO (LAGU- NA DE VENECIA).– Un alga verde, perteneciente al género Prasiola conocida de hábitats terrestres, marinos y de agua dulce, se cita por vez primera en el mar Mediterráneo. En 2002, durante un monitoreo en sustratos blandos en la laguna de Venecia (Italia), fueron hallados en diversas áreas especímenes atribuibles a este género. Las características morfológicas de los talos son descritas y se discute su presencia en la laguna de Venecia. Se presentan datos sobre la vegetación algal asociada.