Chlorophyta, Trebouxiophyceae
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The Hawaiian Freshwater Algae Biodiversity Survey
Sherwood et al. BMC Ecology 2014, 14:28 http://www.biomedcentral.com/1472-6785/14/28 RESEARCH ARTICLE Open Access The Hawaiian freshwater algae biodiversity survey (2009–2014): systematic and biogeographic trends with an emphasis on the macroalgae Alison R Sherwood1*, Amy L Carlile1,2, Jessica M Neumann1, J Patrick Kociolek3, Jeffrey R Johansen4, Rex L Lowe5, Kimberly Y Conklin1 and Gernot G Presting6 Abstract Background: A remarkable range of environmental conditions is present in the Hawaiian Islands due to their gradients of elevation, rainfall and island age. Despite being well known as a location for the study of evolutionary processes and island biogeography, little is known about the composition of the non-marine algal flora of the archipelago, its degree of endemism, or affinities with other floras. We conducted a biodiversity survey of the non-marine macroalgae of the six largest main Hawaiian Islands using molecular and microscopic assessment techniques. We aimed to evaluate whether endemism or cosmopolitanism better explain freshwater algal distribution patterns, and provide a baseline data set for monitoring future biodiversity changes in the Hawaiian Islands. Results: 1,786 aquatic and terrestrial habitats and 1,407 distinct collections of non-marine macroalgae were collected from the islands of Kauai, Oahu, Molokai, Maui, Lanai and Hawaii from the years 2009–2014. Targeted habitats included streams, wet walls, high elevation bogs, taro fields, ditches and flumes, lakes/reservoirs, cave walls and terrestrial areas. Sites that lacked freshwater macroalgae were typically terrestrial or wet wall habitats that were sampled for diatoms and other microalgae. Approximately 50% of the identifications were of green algae, with lesser proportions of diatoms, red algae, cyanobacteria, xanthophytes and euglenoids. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
The Green Puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New Generic and Species Concept Among This Widely Distributed Genus
Phytotaxa 441 (2): 113–142 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.441.2.2 The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus THOMAS PRÖSCHOLD1,3* & TATYANA DARIENKO2,4 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D-37073 Göttingen, Germany 3 [email protected]; http://orcid.org/0000-0002-7858-0434 4 [email protected]; http://orcid.org/0000-0002-1957-0076 *Correspondence author Abstract Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchy- matous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary struc- ture of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. -
Composition and Distribution of Subaerial Algal Assemblages in Galway City, Western Ireland
Cryptogamie, Algol., 2003, 24 (3): 245-267 © 2003 Adac. Tous droits réservés Composition and distribution of subaerial algal assemblages in Galway City, western Ireland Fabio RINDI* and Michael D. GUIRY Department of Botany, Martin Ryan Institute, National University of Ireland, Galway, Ireland (Received 5 October 2002, accepted 26 March 2003) Abstract – The subaerial algal assemblages of Galway City, western Ireland, were studied by examination of field collections and culture observations; four main types of assem- blages were identified. The blue-green assemblage was the most common on stone and cement walls; it was particularly well-developed at sites characterised by poor water drainage. Gloeocapsa alpina and other species of Gloeocapsa with coloured envelopes were the most common forms; Tolypothrix byssoidea and Nostoc microscopicum were also found frequently. The Trentepohlia assemblage occurred also on walls; it was usually produced by large growths of Trentepohlia iolithus, mainly on concrete. Trentepohlia cf. umbrina and Printzina lagenifera were less common and occurred on different substrata. The prasio- lalean assemblage was the community usually found at humid sites at the basis of many walls and corners. Rosenvingiella polyrhiza, Prasiola calophylla and Phormidium autumnale were the most common entities; Klebsormidium flaccidum and Prasiola crispa were locally abundant at some sites. The Desmococcus assemblage was represented by green growths at the basis of many trees and electric-light poles and less frequently occurred at the bases of walls. Desmococcus olivaceus was the dominant form, sometimes with Chlorella ellipsoidea. Trebouxia cf. arboricola, Apatococcus lobatus and Trentepohlia abietina were the most common corticolous algae. Fifty-one subaerial algae were recorded; most did not exhibit any obvious substratum preference, the Trentepohliaceae being the only remarkable excep- tion. -
Supplementary Information the Biodiversity and Geochemistry Of
Supplementary Information The Biodiversity and Geochemistry of Cryoconite Holes in Queen Maud Land, East Antarctica Figure S1. Principal component analysis of the bacterial OTUs. Samples cluster according to habitats. Figure S2. Principal component analysis of the eukaryotic OTUs. Samples cluster according to habitats. Figure S3. Principal component analysis of selected trace elements that cause the separation (primarily Zr, Ba and Sr). Figure S4. Partial canonical correspondence analysis of the bacterial abundances and all non-collinear environmental variables (i.e., after identification and exclusion of redundant predictor variables) and without spatial effects. Samples from Lake 3 in Utsteinen clustered with higher nitrate concentration and samples from Dubois with a higher TC abundance. Otherwise no clear trends could be observed. Table S1. Number of sequences before and after quality control for bacterial and eukaryotic sequences, respectively. 16S 18S Sample ID Before quality After quality Before quality After quality filtering filtering filtering filtering PES17_36 79285 71418 112519 112201 PES17_38 115832 111434 44238 44166 PES17_39 128336 123761 31865 31789 PES17_40 107580 104609 27128 27074 PES17_42 225182 218495 103515 103323 PES17_43 219156 213095 67378 67199 PES17_47 82531 79949 60130 59998 PES17_48 123666 120275 64459 64306 PES17_49 163446 158674 126366 126115 PES17_50 107304 104667 158362 158063 PES17_51 95033 93296 - - PES17_52 113682 110463 119486 119205 PES17_53 126238 122760 72656 72461 PES17_54 120805 117807 181725 181281 PES17_55 112134 108809 146821 146408 PES17_56 193142 187986 154063 153724 PES17_59 226518 220298 32560 32444 PES17_60 186567 182136 213031 212325 PES17_61 143702 140104 155784 155222 PES17_62 104661 102291 - - PES17_63 114068 111261 101205 100998 PES17_64 101054 98423 70930 70674 PES17_65 117504 113810 192746 192282 Total 3107426 3015821 2236967 2231258 Table S2. -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Research Article
Ecologica Montenegrina 20: 24-39 (2019) This journal is available online at: www.biotaxa.org/em Biodiversity of phototrophs in illuminated entrance zones of seven caves in Montenegro EKATERINA V. KOZLOVA1*, SVETLANA E. MAZINA1,2 & VLADIMIR PEŠIĆ3 1 Department of Ecological Monitoring and Forecasting, Ecological Faculty of Peoples’ Friendship University of Russia, 115093 Moscow, 8-5 Podolskoye shosse, Ecological Faculty, PFUR, Russia 2 Department of Radiochemistry, Chemistry Faculty of Lomonosov Moscow State University 119991, 1-3 Leninskiye Gory, GSP-1, MSU, Moscow, Russia 3 Department of Biology, Faculty of Sciences, University of Montenegro, Cetinjski put b.b., 81000 Podgorica, Montenegro *Corresponding autor: [email protected] Received 4 January 2019 │ Accepted by V. Pešić: 9 February 2019 │ Published online 10 February 2019. Abstract The biodiversity of the entrance zones of the Montenegro caves is barely studied, therefore the purpose of this study was to assess the biodiversity of several caves in Montenegro. The samples of phototrophs were taken from various substrates of the entrance zone of 7 caves in July 2017. A total of 87 species of phototrophs were identified, including 64 species of algae and Cyanobacteria, and 21 species of Bryophyta. Comparison of biodiversity was carried out using Jacquard and Shorygin indices. The prevalence of cyanobacteria in the algal flora and the dominance of green algae were revealed. The composition of the phototrophic communities was influenced mainly by the morphology of the entrance zones, not by the spatial proximity of the studied caves. Key words: karst caves, entrance zone, ecotone, algae, cyanobacteria, bryophyte, Montenegro. Introduction The subterranean karst forms represent habitats that considered more climatically stable than the surface. -
First Report of a Species of Prasiola (Chlorophyta: Prasiolaceae) from the Mediterranean Sea (Lagoon of Venice)*
sm69n3343 12/9/05 13:44 Página 343 SCI. MAR., 69 (3): 343-346 SCIENTIA MARINA 2005 First report of a species of Prasiola (Chlorophyta: Prasiolaceae) from the Mediterranean Sea (Lagoon of Venice)* CHIARA MIOTTI1, DANIELE CURIEL1, ANDREA RISMONDO1, GIORGIO BELLEMO1, CHIARA DRI1, EMILIANO CHECCHIN1 and MARA MARZOCCHI2 1 SELC pscarl, Via dell’Elettricità 3d, 30174, Venezia, Italy. E-mail: [email protected] 2 Dipartimento di Biologia, Università di Padova, Via Trieste 75, 35121 Padova, Italy. SUMMARY: A green alga belonging to the genus Prasiola, known from terrestrial, marine and freshwater habitats of polar and cold-temperate regions, is recorded for the first time in the Mediterranean Sea. In 2002, during a survey on soft substrata in the Lagoon of Venice (Italy), specimens referable to this genus were found in several areas. The morphological features of thalli are described and their occurrence in the Lagoon of Venice is discussed. Data on associated algal vegetation are also presented. Keywords: green algae, Lagoon of Venice, Mediterranean Sea, Prasiola, phytobenthos RESUMEN: PRIMERA CITA DE UNA ESPECIE DE PRASIOLA (CHLOROPHYTA: PRASIOLACEAE) PARA EL MAR MEDITERRÁNEO (LAGU- NA DE VENECIA).– Un alga verde, perteneciente al género Prasiola conocida de hábitats terrestres, marinos y de agua dulce, se cita por vez primera en el mar Mediterráneo. En 2002, durante un monitoreo en sustratos blandos en la laguna de Venecia (Italia), fueron hallados en diversas áreas especímenes atribuibles a este género. Las características morfológicas de los talos son descritas y se discute su presencia en la laguna de Venecia. Se presentan datos sobre la vegetación algal asociada. -
Prasiola Stipitata 50.490 Suhr in Jessen Foliose MICRO Techniques Needed and Plant Shape PLANT
Prasiola stipitata 50.490 Suhr in Jessen foliose MICRO Techniques needed and plant shape PLANT Classification Phylum: Chlorophyta; Order: Prasiolales; Family: Prasiolaceae *Descriptive name stalked Guano-blades (referring to the shape and usual habitat in bird colonies) Features plants dark-green, of small flat blades (1-4mm long) on short stalks, forming dark, flakey coatings on rock in bird colonies Variations blades may be ruffled at the margins Special requirements 1. view the small box-shaped cells in packets of 4 that run in lines 2. young blades may consist of single cell rows (uniseriate) Occurrences a cold-temperate species of N hemisphere, also Chile, New Zealand and in Victoria and Tasmania Usual Habitat on rock in bird colonies Similar Species large plants are similar to Enteromorpha or immature Ulva, or Ulvaria but the small cells are in characteristic groups or packets of 4 in Prasiola. Young (uniseriate) blades look like Rosenvingiella but that genus has cylindrical branches Description in the Benthic Flora Part I, pages 162,163,165 Details of Anatomy 1 2. 3. Prasiola stipitata (slide 071) stained blue and viewed microscopically at different magnifications 1. whole plant showing a cluster of blades about 1mm long and of different widths 2. young blades showing the rows and packets of cells characteristic of the genus 3. cell detail, showing the characteristic grouping into packets of 4 * Descriptive names are inventions to aid identification, and are not commonly used “Algae Revealed” R N Baldock, S Australian State Herbarium, October 2003 4. 5. 4. Prasiola stipitata Suhr in Jessen, (A53836), from Recherche Bay, W Australia, in a bird colony 5. -
Green Algae and the Origin of Land Plants1
American Journal of Botany 91(10): 1535±1556. 2004. GREEN ALGAE AND THE ORIGIN OF LAND PLANTS1 LOUISE A. LEWIS2,4 AND RICHARD M. MCCOURT3,4 2Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269 USA; and 3Department of Botany, Academy of Natural Sciences, 1900 Benjamin Franklin Parkway, Philadelphia, Pennsylvania 19103 USA Over the past two decades, molecular phylogenetic data have allowed evaluations of hypotheses on the evolution of green algae based on vegetative morphological and ultrastructural characters. Higher taxa are now generally recognized on the basis of ultrastruc- tural characters. Molecular analyses have mostly employed primarily nuclear small subunit rDNA (18S) and plastid rbcL data, as well as data on intron gain, complete genome sequencing, and mitochondrial sequences. Molecular-based revisions of classi®cation at nearly all levels have occurred, from dismemberment of long-established genera and families into multiple classes, to the circumscription of two major lineages within the green algae. One lineage, the chlorophyte algae or Chlorophyta sensu stricto, comprises most of what are commonly called green algae and includes most members of the grade of putatively ancestral scaly ¯agellates in Prasinophyceae plus members of Ulvophyceae, Trebouxiophyceae, and Chlorophyceae. The other lineage (charophyte algae and embryophyte land plants), comprises at least ®ve monophyletic groups of green algae, plus embryophytes. A recent multigene analysis corroborates a close relationship between Mesostigma (formerly in the Prasinophyceae) and the charophyte algae, although sequence data of the Mesostigma mitochondrial genome analysis places the genus as sister to charophyte and chlorophyte algae. These studies also support Charales as sister to land plants. -
Freshwater Diatom Biogeography and the Genus Luticola: An
1 1 2 Freshwater diatom biogeography and the genus Luticola: An 3 extreme case of endemism in Antarctica 4 5 J.P. Kociolek1,2*, K. Kopalová3, S.E. Hamsher1, T.J. Kohler3,4, B. Van de Vijver5,6, P. 6 Convey7. D.M. McKnight4 7 8 1Museum of Natural History, UCB 218, University of Colorado, Boulder, CO 80309, USA 9 2Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO 80309 10 USA 11 3Charles University in Prague, Faculty of Science, Department of Ecology, Viničná 7, 12844 12 Prague 2, Czech Republic 13 4University of Colorado, Institute of Arctic & Alpine Research, Boulder, CO 80309 USA 14 5Botanic Garden Meise, Department of Bryophyta & Thallophyta, Nieuwelaan 38, B-1860 15 Belgium 16 6University of Antwerp, Department of Biology, ECOBE, Universiteitsplein 1, B-2610 Wilrijk, 17 Antwerpen, Belgium 18 7British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, United 19 Kingdom 20 21 Correspondence: 22 Dr. J. Patrick Kociolek 23 Museum of Natural History and Department of Ecology and Evolutionary Biology 24 University of Colorado 25 Boulder, CO 80309, USA 26 [email protected] 27 2 28 Abstract Historic views on levels of endemism in the Antarctic region have 29 characterized the region as a frozen desert with little diversity and low endemism. More 30 recent studies have uncovered that endemism does exist in this region and may be much 31 greater than previously expected in several groups. For microbes, assessing levels of 32 endemism in the Antarctic region has been particularly important, especially against a 33 backdrop of debate regarding the possible cosmopolitan nature of small species.