Unveiling the Bmp13 Enigma : Redundant Morphogen Or Crucial Regulator?
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Amh) Relative to Sox9a, Sox9b, and Cyp19a1a, During Gonad Development
Gene Expression Patterns 5 (2005) 655–667 www.elsevier.com/locate/modgep Characterization and expression pattern of zebrafish anti-Mu¨llerian hormone (amh) relative to sox9a, sox9b, and cyp19a1a, during gonad development Adriana Rodrı´guez-Marı´, Yi-Lin Yan, Ruth A. BreMiller, Catherine Wilson, Cristian Can˜estro, John H. Postlethwait* Institute of Neuroscience, University of Oregon, 1425 E. 13th Avenue, Eugene, OR 97403, USA Received 28 January 2005; received in revised form 28 February 2005; accepted 28 February 2005 Available online 19 April 2005 Abstract The role of Anti-Mu¨llerian hormone (Amh) during gonad development has been studied extensively in mammals, but is less well understood in other vertebrates. In male mammalian embryos, Sox9 activates expression of Amh, which initiates the regression of the Mu¨llerian ducts and inhibits the expression of aromatase (Cyp19a1), the enzyme that converts androgens to estrogens. To better understand shared features of vertebrate gonadogenesis, we cloned amh cDNA from zebrafish, characterized its genomic structure, mapped it, analyzed conserved syntenies, studied its expression pattern in embryos, larvae, juveniles, and adults, and compared it to the expression patterns of sox9a, sox9b and cyp19a1a. We found that the onset of amh expression occurred while gonads were still undifferentiated and sox9a and cyp19a1a were already expressed. In differentiated gonads of juveniles, amh showed a sexually dimorphic expression pattern. In 31 days post-fertilization juveniles, testes expressed amh and sox9a, but not cyp19a1a, while ovaries expressed cyp19a1a and sox9b, but not amh.In adult testes, amh and sox9a were expressed in presumptive Sertoli cells. In adult ovaries, amh and cyp19a1a were expressed in granulosa cells surrounding the oocytes, and sox9b was expressed in a complementary fashion in the ooplasm of oocytes. -
Widespread Cis-Regulatory Convergence Between the Extinct Tasmanian Tiger and Gray Wolf
Downloaded from genome.cshlp.org on October 7, 2021 - Published by Cold Spring Harbor Laboratory Press Research Widespread cis-regulatory convergence between the extinct Tasmanian tiger and gray wolf Charles Y. Feigin,1,2 Axel H. Newton,1,3 and Andrew J. Pask1,3 1School of BioSciences, The University of Melbourne, Parkville, Victoria 3010, Australia; 2Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA; 3Museums Victoria, Melbourne, Victoria 3053, Australia The extinct marsupial Tasmanian tiger, or thylacine, and the eutherian gray wolf are among the most widely recognized examples of convergent evolution in mammals. Despite being distantly related, these large predators independently evolved extremely similar craniofacial morphologies, and evidence suggests that they filled similar ecological niches. Previous anal- yses revealed little evidence of adaptive convergence between their protein-coding genes. Thus, the genetic basis of their convergence is still unclear. Here, we identified candidate craniofacial cis-regulatory elements across vertebrates and com- pared their evolutionary rates in the thylacine and wolf, revealing abundant signatures of convergent positive selection. Craniofacial thylacine–wolf accelerated regions were enriched near genes involved in TGF beta (TGFB) and BMP signaling, both of which are key morphological signaling pathways with critical roles in establishing the identities and boundaries be- tween craniofacial tissues. Similarly, enhancers of genes involved in craniofacial nerve development showed convergent se- lection and involvement in these pathways. Taken together, these results suggest that adaptation in cis-regulators of TGF beta and BMP signaling may provide a mechanism to explain the coevolution of developmentally and functionally integrat- ed craniofacial structures in these species. -
Characterization of a Y‐Specific Duplication/Insertion of the Anti
Received: 1 September 2019 | Revised: 20 December 2019 | Accepted: 24 December 2019 DOI: 10.1111/1755-0998.13133 RESOURCE ARTICLE Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens Romain Feron1,2 | Margot Zahm3 | Cédric Cabau4 | Christophe Klopp3,4 | Céline Roques5 | Olivier Bouchez5 | Camille Eché5 | Sophie Valière5 | Cécile Donnadieu5 | Pierrick Haffray6 | Anastasia Bestin6 | Romain Morvezen6 | Hervé Acloque7 | Peter T. Euclide8 | Ming Wen1,9 | Elodie Jouano1 | Manfred Schartl10,11 | John H. Postlethwait12 | Claire Schraidt13 | Mark R. Christie13,14 | Wesley A. Larson15 | Amaury Herpin1 | Yann Guiguen1 1INRAE, UR 1037 Fish Physiology and Genomics, Rennes, France 2Department of Ecology and Evolution, Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland 3Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRAE, Castanet Tolosan, France 4SIGENAE, GenPhySE, INRAE, ENVT, Université de Toulouse, Castanet Tolosan, France 5US 1426, GeT-PlaGe, INRAE, Genotoul, Castanet-Tolosan, France 6French Poultry and Aquaculture Breeders, SYSAAF, Rennes, France 7GenPhySE, INRAE, INPT, ENVT, Université de Toulouse, Castanet-Tolosan, France 8Wisconsin Cooperative Fishery Research Unit, University of Wisconsin-Stevens Point, Stevens Point, WI, USA 9State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Changsha, China 10Developmental Biochemistry, Biozentrum, University of Würzburg, Würzburg, Germany 11Department of Chemistry and Biochemistry, The Xiphophorus Genetic Stock Center, Texas State University, San Marcos, TX, USA 12Institute of Neuroscience, University of Oregon, Eugene, OR, USA 13Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USA 14Department of Biological Sciences, Purdue University, West Lafayette, IN, USA 15U.S. -
Regulation of Cell Polarity and Invasion by TGF-Β and BMP Signaling
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine 1403 Regulation of cell polarity and invasion by TGF-β and BMP signaling MAHSA SHAHIDI DADRAS ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6206 ISBN 978-91-513-0171-6 UPPSALA urn:nbn:se:uu:diva-334409 2017 Dissertation presented at Uppsala University to be publicly examined in B42, BMC, Husargatan 3, Uppsala, Friday, 19 January 2018 at 13:00 for the degree of Doctor of Philosophy (Faculty of Medicine). The examination will be conducted in English. Faculty examiner: Professor Petra Knaus (Free University of Berlin). Abstract Shahidi Dadras, M. 2017. Regulation of cell polarity and invasion by TGF-β and BMP signaling. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine 1403. 53 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-513-0171-6. Transforming growth factor β (TGF-β) and bone morphogenetic protein (BMP) signaling pathways are involved in many physiological processes during embryonic and adult life. TGF- β promotes epithelial to mesenchymal transition (EMT). We identified a gene target of TGF- β signaling, encoding the salt-inducible kinase 1 (SIK1). A potential substrate of this kinase, the polarity protein Par3, is an established regulator of tight junction assembly. SIK1 associates with Par3, can potentially phosphorylate Par3 and leads to its degradation, contributing to tight junction disassembly. Glioblastoma multiforme (GBM) is a common malignancy in the central nervous system, characterized by high heterogeneity, invasiveness, and resistance to therapy. One of the causes of heterogeneity and therapy-resistance is the existence of glioblastoma stem cells (GSCs). TGF- β signaling promotes self-renewal while BMP signaling induces differentiation of GSCs. -
Decorin Knockdown Affects the Gene Expression Profile of Adhesion, Growth and Extracellular Matrix Metabolism in C-28/I2 Chondrocytes
PLOS ONE RESEARCH ARTICLE Decorin knockdown affects the gene expression profile of adhesion, growth and extracellular matrix metabolism in C-28/I2 chondrocytes ☯ ☯ Mengying WangID , Zhengzheng Li , Meng Zhang, Hui Wang, Ying Zhang, Yiping Feng, Yinan Liu, Jinghong Chen*☯ Institute of Endemic Diseases, School of Public Health, Xi'an Jiaotong University Health Science Center, a1111111111 Xi'an, Shaanxi, PR China a1111111111 a1111111111 ☯ These authors contributed equally to this work. a1111111111 * [email protected] a1111111111 Abstract Decorin is a member of small leucine-rich proteoglycan family, which is involved in multiple OPEN ACCESS biological functions mainly as a structural and signaling molecule, and disturbances in its Citation: Wang M, Li Z, Zhang M, Wang H, Zhang own metabolism plays a crucial role in the pathogenesis of osteoarthropathy. In this study, Y, Feng Y, et al. (2020) Decorin knockdown affects we aim to further explore the biological function of decorin and their role in human chondro- the gene expression profile of adhesion, growth cyte cell line, C28/I2. Lentivirus-mediated shRNA was applied to down-regulate decorin and extracellular matrix metabolism in C-28/I2 chondrocytes. PLoS ONE 15(4): e0232321. https:// expression in C28/I2 chondrocytes. Effect of decorin knockdown on gene expression pro- doi.org/10.1371/journal.pone.0232321 files was determined by RNA sequencing followed by bioinformatics analysis. MTT, adhe- Editor: Dragana Nikitovic, University of Crete, sion assays and flow cytometry were used to investigate the effect of decorin knockdown on GREECE cell proliferation, adhesion, and apoptosis. sGAG content in the culture medium was deter- Received: January 2, 2020 mined by DMMB assay. -
Supplementary Materials
Supplementary Materials + - NUMB E2F2 PCBP2 CDKN1B MTOR AKT3 HOXA9 HNRNPA1 HNRNPA2B1 HNRNPA2B1 HNRNPK HNRNPA3 PCBP2 AICDA FLT3 SLAMF1 BIC CD34 TAL1 SPI1 GATA1 CD48 PIK3CG RUNX1 PIK3CD SLAMF1 CDKN2B CDKN2A CD34 RUNX1 E2F3 KMT2A RUNX1 T MIXL1 +++ +++ ++++ ++++ +++ 0 0 0 0 hematopoietic potential H1 H1 PB7 PB6 PB6 PB6.1 PB6.1 PB12.1 PB12.1 Figure S1. Unsupervised hierarchical clustering of hPSC-derived EBs according to the mRNA expression of hematopoietic lineage genes (microarray analysis). Hematopoietic-competent cells (H1, PB6.1, PB7) were separated from hematopoietic-deficient ones (PB6, PB12.1). In this experiment, all hPSCs were tested in duplicate, except PB7. Genes under-expressed or over-expressed in blood-deficient hPSCs are indicated in blue and red respectively (related to Table S1). 1 C) Mesoderm B) Endoderm + - KDR HAND1 GATA6 MEF2C DKK1 MSX1 GATA4 WNT3A GATA4 COL2A1 HNF1B ZFPM2 A) Ectoderm GATA4 GATA4 GSC GATA4 T ISL1 NCAM1 FOXH1 NCAM1 MESP1 CER1 WNT3A MIXL1 GATA4 PAX6 CDX2 T PAX6 SOX17 HBB NES GATA6 WT1 SOX1 FN1 ACTC1 ZIC1 FOXA2 MYF5 ZIC1 CXCR4 TBX5 PAX6 NCAM1 TBX20 PAX6 KRT18 DDX4 TUBB3 EPCAM TBX5 SOX2 KRT18 NKX2-5 NES AFP COL1A1 +++ +++ 0 0 0 0 ++++ +++ ++++ +++ +++ ++++ +++ ++++ 0 0 0 0 +++ +++ ++++ +++ ++++ 0 0 0 0 hematopoietic potential H1 H1 H1 H1 H1 H1 PB6 PB6 PB7 PB7 PB6 PB6 PB7 PB6 PB6 PB6.1 PB6.1 PB6.1 PB6.1 PB6.1 PB6.1 PB12.1 PB12.1 PB12.1 PB12.1 PB12.1 PB12.1 Figure S2. Unsupervised hierarchical clustering of hPSC-derived EBs according to the mRNA expression of germ layer differentiation genes (microarray analysis) Selected ectoderm (A), endoderm (B) and mesoderm (C) related genes differentially expressed between hematopoietic-competent (H1, PB6.1, PB7) and -deficient cells (PB6, PB12.1) are shown (related to Table S1). -
The Nuclear Receptor REVERB Represses the Transcription of Growthdifferentiation Factor 10 and 15 Genes in Rat Endometrium Strom
Physiological Reports ISSN 2051-817X ORIGINAL RESEARCH The nuclear receptor REV-ERBa represses the transcription of growth/differentiation factor 10 and 15 genes in rat endometrium stromal cells Lijia Zhao1, Keishiro Isayama1, Huatao Chen1,*, Nobuhiko Yamauchi1, Yasufumi Shigeyoshi2, Seiichi Hashimoto3 & Masa-aki Hattori1 1 Department of Animal and Marine Bioresource Sciences, Graduate School of Agriculture, Kyushu University, Fukuoka, Japan 2 Department of Anatomy and Neurobiology, Kinki University School of Medicine, Osaka, Japan 3 Graduate School of Medicine, The University of Tokyo, Tokyo, Japan Keywords Abstract Circadian clock, decidualization, growth/ differentiation factors, REV-ERBa. Cellular oscillators in the uterus play critical roles in the gestation processes of mammals through entraining of the clock proteins to numerous downstream Correspondence genes, including growth/differentiation factor (Gdf)10 and Gdf15. The expres- Masa-aki Hattori, Department of Animal and sion of Gdf10 and Gdf15 is significantly increased in the uterus during decidu- Marine Bioresource Sciences, Graduate alization, but the mechanism underlying the regulation of Gdf gene expression School of Agriculture, Kyushu University, in the uterus is poorly understood. Here, we focused on the function of the Hakozaki, Higashi-ku, Fukuoka 812-8581, cellular oscillators in the expression of Gdf family by using uterine endome- Japan. Tel: +81-92-642-2938 trial stromal cells (UESCs) isolated from pregnant Per2-dLuc transgenic rats. Fax: +81-92-642-2938 A significant decline of Per2-dLuc bioluminescence activity was induced in E-mail: [email protected] in vitro decidualized UESCs, and concomitantly the expression of canonical clock genes was downregulated. Conversely, the expression of Gdf10 and ⁄ Present address Gdf15 of the Gdf was upregulated. -
A Deletion in GDF7 Is Associated with a Heritable Forebrain Commissural
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.12.091686; this version posted May 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A deletion in GDF7 is associated with a heritable forebrain commissural malformation concurrent with ventriculomegaly and interhemispheric cysts in cats. Yoshihiko Yu1,2,*, Erica K. Creighton1,*, Reuben M. Buckley1, Leslie A. Lyons1,†, 99 Lives Consortium 1Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, 65211, USA 2Laboratory of Veterinary Radiology, Nippon Veterinary and Life Science University, Musashino, Tokyo, 180-8602, Japan *The first two authors (Y.Y., E.K.C) contributed equally to this work. †Corresponding author: Leslie A. Lyons, PhD Department of Veterinary Medicine and Surgery College of Veterinary Medicine University of Missouri Columbia, MO 65211 USA Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.12.091686; this version posted May 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Key words: feline; Felis catus; brain malformation; BMP12; neurodevelopment; genetics; genomics; Mendelian traits; genome-wide association study; whole genome sequencing Abstract An inherited neurologic syndrome in a family of mixed-breed Oriental cats has been characterized as forebrain commissural malformation concurrent with ventriculomegaly and interhemispheric cysts. -
Expression of Mirnas from the Imprinted DLK1/DIO3 Locus Signals the Osteogenic Potential of Human Pluripotent Stem Cells
cells Article Expression of miRNAs from the Imprinted DLK1/DIO3 Locus Signals the Osteogenic Potential of Human Pluripotent Stem Cells Laetitia Barrault 1, Jacqueline Gide 1, Tingting Qing 1, Lea Lesueur 2, Jorg Tost 3 , Jerome Alexandre Denis 2 , Michel Cailleret 2 , Laetitia Aubry 2, Marc Peschanski 1,2, Cécile Martinat 2,* and Sandrine Baghdoyan 2 1 CECS/AFM, I-STEM, 91100 Corbeil-Essonnes, France; [email protected] (L.B.); [email protected] (J.G.); [email protected] (T.Q.); [email protected] (M.P.) 2 INSERM/ UEVE UMR 861, Paris Saclay Univ I-STEM, 91100 Corbeil-Essonnes, France; [email protected] (L.L.); [email protected] (J.A.D.); [email protected] (M.C.); [email protected] (L.A.); [email protected] (S.B.) 3 LEE/ CNRGH/ CEA—IBFJ 2, 91000 Evry, France; [email protected] * Correspondence: [email protected] Received: 27 August 2019; Accepted: 19 November 2019; Published: 26 November 2019 Abstract: Substantial variations in differentiation properties have been reported among human pluripotent cell lines (hPSC), which could affect their utility and clinical safety. We characterized the variable osteogenic capacity observed between different human pluripotent stem cell lines. By focusing on the miRNA expression profile, we demonstrated that the osteogenic differentiation propensity of human pluripotent stem cell lines could be associated with the methylation status and the expression of miRNAs from the imprinted DLK1/DIO3 locus. More specifically, quantitative analysis of the expression of six different miRNAs of that locus prospectively identified human embryonic stem cells and human-induced pluripotent stem cells with differential osteogenic differentiation capacities. -
The Application of Tissue Engineering to Regeneration of Pulp and Dentin in Endodontics Misako Nakashima, Phd, DDS, and Akifumi Akamine, Phd, DDS
Review The Application of Tissue Engineering to Regeneration of Pulp and Dentin in Endodontics Misako Nakashima, PhD, DDS, and Akifumi Akamine, PhD, DDS Abstract Caries, pulpitis, and apical periodontitis increase health here is a high rate of success in retention of teeth by endodontic therapy. A recent care costs and attendant loss of economic productivity. Tstudy of more than 1.4 million cases indicate that about 97% of treated teeth remain They ultimately result in premature tooth loss and functional over an 8-yr follow-up period (1). However, many teeth are not restorable therefore diminishing the quality of life. Advances in because of apical resorption and fracture, incompletely formed roots, or carious de- vital pulp therapy with pulp stem/progenitor cells might struction of coronal structures. In addition, vital pulp therapy is not always predictable. give impetus to regenerate dentin-pulp complex with- One novel approach to restore tooth structure is based on biology: regenerative end- out the removal of the whole pulp. Tissue engineering odontic procedures by application of tissue engineering. Over the last two decades, is the science of design and manufacture of new tissues tissue engineering has evolved from science fiction to science. Indeed, isolated clinical to replace lost parts because of diseases including case reports are consistent with the concept that certain clinical treatments might evolve cancer and trauma. The three key ingredients for tissue into regenerative endodontic procedures (2). However, additional translational re- engineering are signals for morphogenesis, stem cells search is needed to develop predictable clinical regenerative procedures. The purpose for responding to morphogens and the scaffold of of this article is to review the biological principles of tissue engineering and the hurdles extracellular matrix. -
Context-Dependent Roles in Cell and Tissue Physiology
Downloaded from http://cshperspectives.cshlp.org/ on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press TGF-b and the TGF-b Family: Context-Dependent Roles in Cell and Tissue Physiology Masato Morikawa,1 Rik Derynck,2 and Kohei Miyazono3 1Ludwig Cancer Research, Science for Life Laboratory, Uppsala University, Biomedical Center, SE-751 24 Uppsala, Sweden 2Department of Cell and Tissue Biology, University of California at San Francisco, San Francisco, California 94143 3Department of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan Correspondence: [email protected] The transforming growth factor-b (TGF-b) is the prototype of the TGF-b family of growth and differentiation factors, which is encoded by 33 genes in mammals and comprises homo- and heterodimers. This review introduces the reader to the TGF-b family with its complexity of names and biological activities. It also introduces TGF-b as the best-studied factor among the TGF-b family proteins, with its diversity of roles in the control of cell proliferation and differentiation, wound healing and immune system, and its key roles in pathology, for exam- ple, skeletal diseases, fibrosis, and cancer. lthough initially thought to stimulate cell TGF-b has been well documented in most cell Aproliferation, just like many growth factors, types, and has been best characterized in epithe- it became rapidly accepted that transforming lial cells. The bifunctional and context-depen- growth factor b (TGF-b) is a bifunctional reg- dent nature of TGF-b activities was further con- ulator that either inhibits or stimulates cell pro- firmed in a large variety of cell systems and liferation. -
Latent TGF-Β Structure and Activation
ARTICLE doi:10.1038/nature10152 Latent TGF-b structure and activation Minlong Shi1, Jianghai Zhu1, Rui Wang1,XingChen1, Lizhi Mi1, Thomas Walz2 & Timothy A. Springer1 Transforming growth factor (TGF)-b is stored in the extracellular matrix as a latent complex with its prodomain. Activation of TGF-b1 requires the binding of av integrin to an RGD sequence in the prodomain and exertion of force on this domain, which is held in the extracellular matrix by latent TGF-b binding proteins. Crystals of dimeric porcine proTGF-b1 reveal a ring-shaped complex, a novel fold for the prodomain, and show how the prodomain shields the growth factor from recognition by receptors and alters its conformation. Complex formation between avb6 integrin and the prodomain is insufficient for TGF-b1 release. Force-dependent activation requires unfastening of a ‘straitjacket’ that encircles each growth-factor monomer at a position that can be locked by a disulphide bond. Sequences of all 33 TGF-b family members indicate a similar prodomain fold. The structure provides insights into the regulation of a family of growth and differentiation factors of fundamental importance in morphogenesis and homeostasis. The TGF-b family is key to specifying the body plan during metazoan Crystal structure development1,2. Members of this family, including nodal, activins, The structure of pro-TGF-b1 at 3.05 A˚ (Fig. 1a–c and Supplementary inhibins, bone morphogenetic proteins (BMPs) and growth differ- Table 1) was solved using multi- and single-wavelength anomalous entiation factors (GDFs), specify the anterior/posterior and dorsal/ diffraction. Electron density maps (Supplementary Fig.