3B and Semaphorin-3F in Ovarian Cancer
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma
Anatomy and Pathology Whole-Genome Microarray Detects Deletions and Loss of Heterozygosity of Chromosome 3 Occurring Exclusively in Metastasizing Uveal Melanoma Sarah L. Lake,1 Sarah E. Coupland,1 Azzam F. G. Taktak,2 and Bertil E. Damato3 PURPOSE. To detect deletions and loss of heterozygosity of disease is fatal in 92% of patients within 2 years of diagnosis. chromosome 3 in a rare subset of fatal, disomy 3 uveal mela- Clinical and histopathologic risk factors for UM metastasis noma (UM), undetectable by fluorescence in situ hybridization include large basal tumor diameter (LBD), ciliary body involve- (FISH). ment, epithelioid cytomorphology, extracellular matrix peri- ϩ ETHODS odic acid-Schiff-positive (PAS ) loops, and high mitotic M . Multiplex ligation-dependent probe amplification 3,4 5 (MLPA) with the P027 UM assay was performed on formalin- count. Prescher et al. showed that a nonrandom genetic fixed, paraffin-embedded (FFPE) whole tumor sections from 19 change, monosomy 3, correlates strongly with metastatic death, and the correlation has since been confirmed by several disomy 3 metastasizing UMs. Whole-genome microarray analy- 3,6–10 ses using a single-nucleotide polymorphism microarray (aSNP) groups. Consequently, fluorescence in situ hybridization were performed on frozen tissue samples from four fatal dis- (FISH) detection of chromosome 3 using a centromeric probe omy 3 metastasizing UMs and three disomy 3 tumors with Ͼ5 became routine practice for UM prognostication; however, 5% years’ metastasis-free survival. to 20% of disomy 3 UM patients unexpectedly develop metas- tases.11 Attempts have therefore been made to identify the RESULTS. Two metastasizing UMs that had been classified as minimal region(s) of deletion on chromosome 3.12–15 Despite disomy 3 by FISH analysis of a small tumor sample were found these studies, little progress has been made in defining the key on MLPA analysis to show monosomy 3. -
On the Turning of Xenopus Retinal Axons Induced by Ephrin-A5
Development 130, 1635-1643 1635 © 2003 The Company of Biologists Ltd doi:10.1242/dev.00386 On the turning of Xenopus retinal axons induced by ephrin-A5 Christine Weinl1, Uwe Drescher2,*, Susanne Lang1, Friedrich Bonhoeffer1 and Jürgen Löschinger1 1Max-Planck-Institute for Developmental Biology, Spemannstrasse 35, 72076 Tübingen, Germany 2MRC Centre for Developmental Neurobiology, King’s College London, New Hunt’s House, Guy’s Hospital Campus, London SE1 1UL, UK *Author for correspondence (e-mail: [email protected]) Accepted 13 January 2003 SUMMARY The Eph family of receptor tyrosine kinases and their turning or growth cone collapse when confronted with ligands, the ephrins, play important roles during ephrin-A5-Fc bound to beads. However, when added in development of the nervous system. Frequently they exert soluble form to the medium, ephrin-A5 induces growth their functions through a repellent mechanism, so that, for cone collapse, comparable to data from chick. example, an axon expressing an Eph receptor does not The analysis of growth cone behaviour in a gradient of invade a territory in which an ephrin is expressed. Eph soluble ephrin-A5 in the ‘turning assay’ revealed a receptor activation requires membrane-associated ligands. substratum-dependent reaction of Xenopus retinal axons. This feature discriminates ephrins from other molecules On fibronectin, we observed a repulsive response, with the sculpturing the nervous system such as netrins, slits and turning of growth cones away from higher concentrations class 3 semaphorins, which are secreted molecules. While of ephrin-A5. On laminin, retinal axons turned towards the ability of secreted molecules to guide axons, i.e. -
Endothelin-2 Signaling in the Neural Retina Promotes the Endothelial Tip Cell State and Inhibits Angiogenesis
Endothelin-2 signaling in the neural retina promotes PNAS PLUS the endothelial tip cell state and inhibits angiogenesis Amir Rattnera,1, Huimin Yua, John Williamsa,b, Philip M. Smallwooda,b, and Jeremy Nathansa,b,c,d,1 Departments of aMolecular Biology and Genetics, cNeuroscience, and dOphthalmology and bHoward Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205 Contributed by Jeremy Nathans, August 20, 2013 (sent for review February 19, 2013) Endothelin signaling is required for neural crest migration and time lapse imaging studies of vascular development in zebrafish homeostatic regulation of blood pressure. Here, we report that and mammalian EC dynamics in explant culture show that the tip constitutive overexpression of Endothelin-2 (Edn2) in the mouse cell and stalk cell states are highly plastic, with frequent retina perturbs vascular development by inhibiting endothelial cell exchanges between the two cell states (8, 9). migration across the retinal surface and subsequent endothelial Several other signaling pathways are also essential for retinal cell invasion into the retina. Developing endothelial cells exist in vascular development. Norrin, a Muller-glia–derived ligand, and one of two states: tip cells at the growing front and stalk cells in its EC receptor Frizzled4 (Fz4), coreceptor Lrp5, and receptor the vascular plexus behind the front. This division of endothelial chaperone Tspan12 activate canonical Wnt signaling in de- cell states is one of the central organizing principles of angiogen- veloping ECs (10). In humans and mice, defects in any of these esis. In the developing retina, Edn2 overexpression leads to components lead to retinal hypovascularization. -
Mir-146A Regulates Migration and Invasion by Targeting NRP2 in Circulating-Tumor Cell Mimicking Suspension Cells
G C A T T A C G G C A T genes Article MiR-146a Regulates Migration and Invasion by Targeting NRP2 in Circulating-Tumor Cell Mimicking Suspension Cells Yeojin Do 1, Jin Gu Cho 1, Ji Young Park 1, Sumin Oh 1, Doyeon Park 1 , Kyung Hyun Yoo 1,2 , Myeong-Sok Lee 1,2, Byung Su Kwon 3,* , Jongmin Kim 1,2,* and Young Yang 2,* 1 Division of Biological Sciences, Sookmyung Women’s University, Seoul 04310, Korea; [email protected] (Y.D.); [email protected] (J.G.C.); [email protected] (J.Y.P.); [email protected] (S.O.); [email protected] (D.P.); [email protected] (K.H.Y.); [email protected] (M.-S.L.) 2 Research Institute for Women’s Health, Sookmyung Women’s University, Seoul 04310, Korea 3 Department of Obstetrics and Gynecology, Kyung Hee University Medical Center, 23, Seoul 02447, Korea * Correspondence: [email protected] (B.S.K.); [email protected] (J.K.); [email protected] (Y.Y.); Tel.: +82-2-958-8837 (B.S.K.); +82-2-710-9553 (J.K.); +82-2-710-9590 (Y.Y.) Abstract: Cancer metastasis is the primary cause of cancer-related death and metastatic cancer has circulating-tumor cells (CTCs), which circulate in the bloodstream before invading other organs. Thus, understanding the precise role of CTCs may provide new insights into the metastasis process and reduce cancer mortality. However, the molecular characteristics of CTCs are not well understood due to a lack of number of CTCs. -
Semaphorin Signaling Guides Cranial Neural Crest Cell Migration in Zebrafish
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Developmental Biology 280 (2005) 373–385 www.elsevier.com/locate/ydbio Semaphorin signaling guides cranial neural crest cell migration in zebrafish Hung-Hsiang Yu, Cecilia B. Moens* Howard Hughes Medical Institute and Division of Basic Science, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N., Box 19024 Seattle, WA 98109, USA Received for publication 2 December 2004, revised 19 January 2005, accepted 28 January 2005 Abstract Cranial neural crest cells (NCCs) migrate into the pharyngeal arches in three primary streams separated by two cranial neural crest (NC)- free zones. Multiple tissues have been implicated in the guidance of cranial NCC migration; however, the signals provided by these tissues have remained elusive. We investigate the function of semaphorins (semas) and their receptors, neuropilins (nrps), in cranial NCC migration in zebrafish. We find that genes of the sema3F and sema3G class are expressed in the cranial NC-free zones, while nrp2a and nrp2b are expressed in the migrating NCCs. sema3F/3G expression is expanded homogeneously in the head periphery through which the cranial NCCs migrate in lzr/pbx4 mutants, in which the cranial NC streams are fused. Antisense morpholino knockdown of Sema3F/3G or Nrp2 suppresses the abnormal cranial NC phenotype of lzr/pbx4 mutants, demonstrating that aberrant Sema3F/3G-Nrp2 signaling is responsible for this phenotype and suggesting that repulsive Sema3F/3G-Npn2 signaling normally contributes to the guidance of migrating cranial NCCs. Furthermore, global over-expression of sema3Gb phenocopies the aberrant cranial NC phenotype of lzr/pbx4 mutants when endogenous Sema3 ligands are knocked down, consistent with a model in which the patterned expression of Sema3 ligands in the head periphery coordinates the migration of Nrp-expressing cranial NCCs. -
Hepatocyte Growth Factor: a Regulator of Inflammation and Autoimmunity
Autoimmunity Reviews 14 (2015) 293–303 Contents lists available at ScienceDirect Autoimmunity Reviews journal homepage: www.elsevier.com/locate/autrev Review Hepatocyte growth factor: A regulator of inflammation and autoimmunity Nicolas Molnarfi a,b,1, Mahdia Benkhoucha a,b,1, Hiroshi Funakoshi d, Toshikazu Nakamura e, Patrice H. Lalive a,b,c,⁎ a Department of Pathology and Immunology, Faculty of Medicine, University of Geneva, Geneva, Switzerland b Department of Clinical Neurosciences, Division of Neurology, Unit of Neuroimmunology and Multiple Sclerosis, University Hospital of Geneva, Geneva, Switzerland c Department of Genetics and Laboratory Medicine, Laboratory Medicine Service, University Hospital of Geneva, Geneva, Switzerland d Center for Advanced Research and Education, Asahikawa Medical University, Asahikawa, Japan e Neurogen Inc., Nakahozumi, Ibaraki, Osaka, Japan article info abstract Article history: Hepatocyte growth factor (HGF) is a pleiotropic cytokine that has been extensively studied over several decades, Received 20 November 2014 but was only recently recognized as a key player in mediating protection of many types of inflammatory and au- Accepted 25 November 2014 toimmune diseases. HGF was reported to prevent and attenuate disease progression by influencing multiple Available online 1 December 2014 pathophysiological processes involved in inflammatory and immune response, including cell migration, matura- tion, cytokine production, antigen presentation, and T cell effector function. In this review, we discuss the actions Keywords: fl HGF and mechanisms of HGF in in ammation and immunity and the therapeutic potential of this factor for the treat- fl c-Met ment of in ammatory and autoimmune diseases. Inflammation © 2014 Elsevier B.V. All rights reserved. Autoimmunity Autoimmune regulator Therapy Contents 1. -
1,25-Dihydroxyvitamin D3-Induced Genes in Osteoblasts
1,25-DIHYDROXYVITAMIN D3-INDUCED GENES IN OSTEOBLASTS: UNCOVERING NEW FUNCTIONS FOR MENINGIOMA 1 AND SEMAPHORIN 3B IN SKELETAL PHYSIOLOGY by XIAOXUE ZHANG Submitted in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Thesis advisor: Paul N. MacDonald Department of Pharmacology CASE WESTERN RESERVE UNIVERSITY May 2009 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. I dedicate this thesis to my mother and father for their lifelong love, encouragement and sacrifice TABLE OF CONTENTS Table of Contents ii List of Tables iii List of Figures iv Acknowledgements vii Abbreviations x Abstract xiii Chapter I Introduction 1 Chapter II Meningioma 1 (MN1) is a 1,25-dihydroxyvitamin D3- 44 induced transcription coactivator that promotes osteoblast proliferation, motility, differentiation, and function Chapter III Semaphorin 3B (SEMA3B) is a 1,25- 108 dihydroxyvitamin D3-induced gene in osteoblasts that promotes -
Genetic Expression and Mutational Profile Analysis in Different
Gao et al. BMC Cancer (2021) 21:786 https://doi.org/10.1186/s12885-021-08442-y RESEARCH Open Access Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patients Xingjie Gao1,2*†, Chunyan Zhao1,2†, Nan Zhang1,2†, Xiaoteng Cui1,2,3, Yuanyuan Ren1,2, Chao Su1,2, Shaoyuan Wu1,2, Zhi Yao1,2 and Jie Yang1,2* Abstract Background: The clinical pathologic stages (stage I, II, III-IV) of hepatocellular carcinoma (HCC) are closely linked to the clinical prognosis of patients. This study aims at investigating the gene expression and mutational profile in different clinical pathologic stages of HCC. Methods: Based on the TCGA-LIHC cohort, we utilized a series of analytical approaches, such as statistical analysis, random forest, decision tree, principal component analysis (PCA), to identify the differential gene expression and mutational profiles. The expression patterns of several targeting genes were also verified by analyzing the Chinese HLivH060PG02 HCC cohort, several GEO datasets, HPA database, and diethylnitrosamine-induced HCC mouse model. Results: We identified a series of targeting genes with copy number variation, which is statistically associated with gene expression. Non-synonymous mutations mainly existed in some genes (e.g.,TTN, TP53, CTNNB1). Nevertheless, no association between gene mutation frequency and pathologic stage distribution was detected. The random forest and decision tree modeling analysis data showed a group of genes related to different HCC pathologic stages, including GAS2L3 and SEMA3F. Additionally, our PCA data indicated several genes associated with different pathologic stages, including SNRPA and SNRPD2. Compared with adjacent normal tissues, we observed a highly expressed level of GAS2L3, SNRPA, and SNRPD2 (P = 0.002) genes in HCC tissues of our HLivH060PG02 cohort. -
FGF8 Signaling Regulates Growth of Midbrain Dopaminergic Axons by Inducing Semaphorin 3F
4044 • The Journal of Neuroscience, April 1, 2009 • 29(13):4044–4055 Development/Plasticity/Repair FGF8 Signaling Regulates Growth of Midbrain Dopaminergic Axons by Inducing Semaphorin 3F Kenta Yamauchi,1* Shigeki Mizushima,1* Atsushi Tamada,2 Nobuhiko Yamamoto,1 Seiji Takashima,3 and Fujio Murakami1,2 1Laboratory of Neuroscience, Graduate School of Frontier Biosciences, Osaka University, Suita 565-0871, Japan, 2Division of Behavior and Neurobiology, National Institute for Basic Biology, Okazaki 444-8585, Japan, and 3Department of Molecular Cardiology, Osaka University Graduate School of Medicine, Suita 565-0871, Japan Accumulating evidence indicates that signaling centers controlling the dorsoventral (DV) polarization of the neural tube, the roof plate and the floor plate, play crucial roles in axon guidance along the DV axis. However, the role of signaling centers regulating the rostrocau- dal (RC) polarization of the neural tube in axon guidance along the RC axis remains unknown. Here, we show that a signaling center located at the midbrain–hindbrain boundary (MHB) regulates the rostrally directed growth of axons from midbrain dopaminergic neurons (mDANs). We found that beads soaked with fibroblast growth factor 8 (FGF8), a signaling molecule that mediates patterning activities of the MHB, repelled mDAN axons that extended through the diencephalon. This repulsion may be mediated by semaphorin 3F (sema3F) because (1) FGF8-soaked beads induced an increase in expression of sema3F, (2) sema3F expression in the midbrain was essentially abolished by the application of an FGF receptor tyrosine kinase inhibitor, and (3) mDAN axonal growth was also inhibited by sema3F. Furthermore, mDAN axons expressed a sema3F receptor, neuropilin-2 (nrp2), and the removal ofnrp-2 by gene targeting caused caudal growth of mDAN axons. -
Neuropilin-1 Conveys Semaphorin and VEGF Signaling During Neural and Cardiovascular Development
Developmental Cell, Vol. 5, 45–57, July, 2003, Copyright 2003 by Cell Press Neuropilin-1 Conveys Semaphorin and VEGF Signaling during Neural and Cardiovascular Development Chenghua Gu,1,2 E. Rene Rodriguez,3 capable of mediating a variety of protein/protein interac- Dorothy V. Reimert,1,2 Tianzhi Shu,4 tions (Fujisawa et al., 1997). While Npn-1 can mediate Bernd Fritzsch,5 Linda J. Richards,4 heterophilic cell adhesion (Fujisawa et al., 1997; Shimizu Alex L. Kolodkin,1,* and David D. Ginty1,2,* et al., 2000), it is also the ligand binding subunit of the 1Department of Neuroscience semaphorin 3A/collapsin-1 (Sema3A) receptor complex 2 Howard Hughes Medical Institute (He and Tessier-Lavigne, 1997; Kolodkin et al., 1997). 3 Department of Pathology Semaphorins comprise a large family of proteins first The Johns Hopkins University School of Medicine described as regulators of axon pathfinding (Huber et 725 North Wolfe Street al., 2003). Class 3 semaphorins, including Sema3A, are Baltimore, Maryland 21205 secreted vertebrate semaphorins that can act as potent 4 Department of Anatomy and Neurobiology axon repellents for specific populations of neurons. School of Medicine These ligands appear to exert their chemorepulsive ef- The University of Maryland, Baltimore fects via receptor complexes which include the ligand Baltimore, Maryland 21201 binding subunit Npn-1, or its close family member 5 Department of Biomedical Sciences Npn-2, and a signal transducing subunit consisting of Creighton University one of four class A plexin proteins (He et al., 2002). Omaha, Nebraska 68178 Six class 3 secreted semaphorins have been identified, Sema3A, 3B, 3C, 3D, 3E, and 3F, and each of these ligands can bind with high affinity to either Npn-1, Npn-2, Summary or to both. -
ELUCIDATING the ROLE of SEMAPHORIN 7A in BREAST CANCER by Ramon Antonio Garcia-Areas a Dissertation Submitted to the Faculty Of
ELUCIDATING THE ROLE OF SEMAPHORIN 7A IN BREAST CANCER by Ramon Antonio Garcia-Areas A Dissertation Submitted to the Faculty of The Charles E. Schmidt College of Science In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Florida Atlantic University Boca Raton, FL December, 2016 Copyright 2016 by Ramon Antonio Garcia-Areas ii ELUCIDATING THE ROLE OF SEMAPHORIN 7 A IN BREAST CANCEl.~ by Ramon Antonio Garcia-Areas 1 This dissertation was prepared under the direction of the candidate's dissertation advisor, Dr. Vijaya lragavarapu-Charyulu, Department of Biomedical Science\ and has been approved by the members of his supervisory committee. It was submitted to the faculty of the Charles E. Schmidt College of Science and was accept~d in partial fulfillment of the requirements for the degree of Doctor of Philosophy. 1 I SUPERVISORY COMMITTEE: ~7 -tt~L Vijaya lrag~ha~h. D . ~a~~visor Michael Lu, Ph 1 Ta Ja Godenschwege, Ph.D ~ .. ~ ...... h . }iana LOpez. Ph.D. ~Q Dec.eMber lo, 2ol6 Date iii ACKNOWLE DGEMENTS I would like to acknowledge my Dissertation advisor, Dr. Vijaya lragavarapu-Charyulu. for her constant support, dedication and generosity. would like to thank Dr. Stephania Libreros for always pushing us to bigger and better things, but most of all, for her friendship. The completion of my dissertation would not have been achieved without the diligence and dedication of: Samantha Amat, Camila Castro-Silva, Nathalia Gazaniga and Michael Simoes. To my collaborators, Dr. Patricia Keating, Dr. Kathy Schilling and Lillian Onwuha Ekpete, I extend my deepest gratitude. I would like to thank Dr. -
Characterization of Cardiac Progenitor Cell Activity in Engineered Heart Muscle
Characterization of cardiac progenitor cell activity in engineered heart muscle Doctoral Thesis In partial fulfillment of the requirements for the degree “Doctor rerum naturalium (Dr. rer. nat.)” in the Molecular Medicine Study Program at the Georg-August University Göttingen Submitted by Elif Levent born in Karabük, Turkey Göttingen 2016 Members of the Thesis Committee: Prof. Dr. med. Wolfram-Hubertus Zimmermann (Supervisor) Email: [email protected] Phone: +49 (0) 551 39 5781 Postal Address: Institute of Pharmacology and Toxicology University Medical Center Göttingen Georg-August University Göttingen Robert-Koch-Str. 40 37075 Göttingen Germany Prof. Dr. Dörthe Katschinski (Second member of thesis committee) Email: [email protected] Phone: +49 (0) 551 39 5896 Postal Address: Institute of Cardiovascular Physiology Humboldtallee 23 37073 Göttingen Germany Prof. Dr. Viacheslav O. Nikolaev (Third member of thesis committee) Email: [email protected] Phone: +49 (0) 40 7410 51391 Postal Address: Institute of Experimental Cardiovascular Research University Medical Center Hamburg-Eppendorf (UKE) Martinistr. 52 20246 Hamburg Date of disputation: 13.06.16 AFFIDAVIT Here I declare that my doctoral thesis entitled: “Characterization of cardiac progenitor cell activity in engineered heart muscle” has been written independently with no other sources and aids than quoted. Elif Levent Göttingen, April 2016 List of poster presentations Elif Levent, Malte Tiburcy, Amke Hesse, Dörthe Katschinski, Mark Sussman and Wolfram-H Zimmermann (2013). Hypoxia/Reoxygenated engineered heart muscle as an injury model system to investigate cardiac progenitor cell function in heart repair in vitro. Cardiorepair European multidisciplinary initiative (CARE-MI) annual meeting Lisbon, Portugal. Elif Levent, Malte Tiburcy, Mark Sussman and Wolfram-H Zimmermann (2013).