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Microorganisms Microorganisms Healthy human beings have a wide array of bacteria that live within and on them. In fact, a healthy person has 10 times more bacterial cells than human cells! Bacteria are as much a part of our lives as our own cells. This raises some very interesting questions about the relationship between humans and bacteria. How are bacteria helpful to humans? Are they helpful to other organisms? In what ways are microorganisms harmful to us and other organisms? Microorganisms are a diverse group. The term microorganism is a broad term that encompasses all small organisms; the root “micro” All organisms are grouped means “small.” This makes for a diverse group that into one of three domains: includes archaea, bacteria, fungi, and some protists. Bacteria, Archaea, or Microorganisms technically do not include viruses Eukarya (also called because viruses are not considered living things. Eukaryota). Microorganisms span all three domains of life; domains are the largest taxonomic group of organisms. • Archaea are cells with very unusual chemistry and life strategies. Some archaea are referred to as extremophiles because they grow in very hot, very acidic, or other extreme environments. Archaea belong in their own domain (called Domain Archaea). • Bacteria are also classified into their own domain (called Domain Bacteria). This domain includes prokaryotic cells such as Escherichia coli (E. coli), which is a bacterium commonly found in the digestive tracts of animals. Although most E. coli are not harmful, a few specialized ones do cause food poisoning. • Fungi are in Domain Eukarya because they, like animals and plants, are eukaryotic. Fungi include mushrooms, yeasts, and some molds. • Protists are also in Domain Eukarya. Some protists, like kelp, are too large to be considered microorganisms. However, many protists, such as phytoplankton, are microorganisms. prokaryotic: eukaryotic: lacks a nucleus contains a and membrane- nucleus and bound organelles membrane-bound organelles 1 Microorganisms Beneficial Microorganisms Microorganisms are used to produce a variety of food and fermentation: the other products. For example, yeasts are used to produce anaerobic process bread, wine, and beer. Yeasts are able to live with and involving the without oxygen because they can ferment if oxygen is not breakdown of glucose, present during respiration. When using yeast for food resulting production, it is important to regulate the amount of in the production of oxygen present, because the yeast cells will produce alcohol or lactic acid different end products when respiring or fermenting. and carbon dioxide Different bacterial species make different end products when fermenting. For example, Lactobacillus is used to produce cheese, yogurt, and soy sauce. Other bacteria, symbiotic like Acetobacter, are used to produce vinegar. Some relationship: a bacteria are even used to produce nail polish remover relationship in which (acetone) and rubbing alcohol. two species are interdependent; the In addition to being used to produce consumer goods, relationship may be microorganisms have important symbiotic relationships beneficial to one or with humans and other animals. An animal’s body is a both species, or it may diverse place in which microorganisms can live. In fact, be neutral or harmful microorganisms are found in almost every place in and on to one of the species the human body, including the oral cavity, respiratory and beneficial to the tract, intestinal tract, urogenital tract, and skin. Many of other species these relationships are essential to the survival of the animal. For example, microorganisms help with the following processes: • Digestion: Microorganisms in the digestive tract of animals help animals break down foods and absorb nutrients. Cows, goats, sheep, and other grazers are able to digest the cellulose found in grass and leaves because of the microorganisms found in their digestive systems. Microorganisms found in other animals, including humans, help break down a wide variety of food products. • Vitamin production: Microorganisms that live in the human body help us produce vitamins like B12 and a variety of other essential nutrients. 2 Microorganisms • Immunity: Beneficial microorganisms in the human body help protect us from pathogenic (disease-causing) microorganisms by producing chemicals that kill these pathogens and by leaving no room for the pathogens to take hold. This is one of the dangers of using antibacterial soaps and gels: If the soaps or gels remove the native, beneficial microorganisms, an individual is more open to colonization by pathogenic microorganisms. Antibiotics taken to cure an infection also kill native microorganisms and result in yeast infections. Replenishing native microorganisms through probiotics can help reestablish proper balance. Probiotics are microorganisms found in food products such as yogurt. Microorganisms also have symbiotic relationships with plants. Some plants have fungi that work with older, more developed roots to help increase the absorption of water and nutrients. These fungi are called mycorrhizae; the root “myco-“ means fungus and the root “-rrhizae” refers to the plant roots. Some legumes (bean and pea plants) have a symbiotic relationship with Rhizobia, a type of soil bacteria. In response to the presence of these bacteria, a legume plant produces root nodules that house and protect the bacteria. The bacteria, in turn, convert inorganic nitrogen from the atmosphere into usable nitrogen for the plant. This process is called nitrogen fixation. Nitrogen-fixing bacteria are also found free-living in the soil. These bacteria are essential for converting nitrogen into a usable form for all soil-dwelling plants and for other organisms. Animals obtain nitrogen compounds from the foods they eat. Plant- eaters get these compounds by consuming plants, and meat-eaters get nitrogen compounds from the plant-eaters they consume. In this way, the nitrogen-fixing bacteria are essential for life on Earth because they are the primary source of usable nitrogen for most living things. Bacteria and other microorganisms are essential for recycling nitrogen and other essential elements of life. These microorganisms decompose dead organisms and recycle nutrients, making the nutrients available for use by other organisms in an ecosystem. Microorganisms are also the primary food source at the bottom of certain food chains. Phytoplankton, like algae, for example, is a source of food for shrimp, snails, and some small fish. 3 Microorganisms Suppose an animal is born and raised in a sterile laboratory environment free of microorganisms. Another animal is raised in a standard environment containing a vast array of microorganisms. Which animal do you think would be healthier if it was released into the wild? Why? Looking to the Future: Bioremediation Microorganisms have an astonishing array of metabolic options. Almost every chemical on Earth is able to be used and recycled by at least one microorganism. In addition to decomposing and recycling living matter, microorganisms can digest a variety of pollutants and toxins from their environment. Scientists are studying how best to use these microorganisms to help clean up environmental Microorganisms sometimes pollution. The methodical, artificial process of using help clean up oil spills, live organisms to clean up the environment is called including the 2010 Deep bioremediation. Horizon oil spill in the Gulf of Mexico. One example of a microorganism that is currently being studied is Geobacter. This tiny microbe is able to digest and remove petroleum and radioactive metals from groundwater. Geobacter has the added advantage of potentially converting these wastes to biofuels. Scientists are hopeful about future environmental applications of this exciting microorganism. Harmful Microorganisms Some microorganisms feed themselves in a way that causes harm to other organisms. These microorganisms are called pathogens. Pathogens cause a number of different diseases in humans including meningitis, pneumonia, urinary tract infections, and whooping cough. For example, whooping cough (or pertussis) is caused by a bacterium called Bordetella pertussis. This bacterium produces a toxin, attacks the lungs, and causes an increased secretion of mucus by its human host. These activities of the bacterium cause coughing. The most easily recognized symptom of whooping cough is a cough followed by a rapid inhale of air (whoop). 4 Microorganisms Animals have evolved a variety of ways to avoid pathogens and stay healthy. Our immune system has three main strategies for fighting pathogens. • Barriers: Our skin includes a thick layer of cells that protects us from foreign matter and cells. Openings in our bodies, like our nostrils, are protected by mucus that traps and removes debris. • Nonspecific immune response: Specialized cells in the body recognize and remove any foreign matter or cell. • Specific immune response: White blood cells in the bloodstream fight specific pathogens and produce memory cells that search and defend against a particular pathogen. The memory cells produced in the specific immune response protect the body from future encounters with that same pathogen. The first encounter with a pathogen (before memory cells are produced) generally results in illness because the immune system takes time to respond. The pathogen is able to cause disease during this time. The memory cells that are produced during the initial encounter immunization: the process of inducing are able to
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