Symbioses of Cyanobacteria in Marine Environments: Ecological Insights and Biotechnological Perspectives
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Ghosts of the Western Glades Just Northwest of Everglades National Park Lies Probably the Wildest, Least Disturbed Natural Area in All of Florida
Discovering the Ghosts of the Western Glades Just Northwest of Everglades National Park lies probably the wildest, least disturbed natural area in all of Florida. Referred to as the Western Everglades (or Western Glades), it includes Fakahatchee Strand State Preserve and Big Cypress National Preserve. Environmentalists that pushed for the creation of Everglades National Park originally wanted this area included in it. But politics and lack of funds prevented this. Several decades passed before Big Cypress National Preserve was born in 1974. Preserves have slightly less restrictive rules than national parks. So how is the Big Cypress Swamp distinct from the Everglades? Even though both habitats have many similarities (sawgrass prairies & tree islands, for instance), the Big Cypress Swamp is generally 1-2 feet higher in elevation. Also, it has a mainly southwesterly flow of water, dumping into the “ten thousand islands” area on Florida’s Gulf of Mexico coast and serving as an important watershed for the River of Grass to the south. Then, of course, there are the cypress trees. Cypress Trees Not surprisingly, of course, is the fact that the Big Cypress Swamp has about 1/3 of its area covered in cypress trees. Mostly they are the small “dwarf pond cypress” trees. (“Big” refers to the large mass of land not the size of the trees.) A few locations, however, still do boast the impressive towering “bald cypress” trees but most of those were logged out between the years 1913 - 1948. Ridge & Slough Topography Topography simply means the relief (or elevation variances) of any particular area of land. -
Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide
antioxidants Review Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide Ivan Kushkevych 1,* , Veronika Bosáková 1,2 , Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 3,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (V.B.); [email protected] (M.V.) 2 Department of Biology, Faculty of Medicine, Masaryk University, 62500 Brno, Czech Republic 3 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Vienna, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: Hydrogen sulfide is a toxic compound that can affect various groups of water microorgan- isms. Photolithotrophic sulfur bacteria including Chromatiaceae and Chlorobiaceae are able to convert inorganic substrate (hydrogen sulfide and carbon dioxide) into organic matter deriving energy from photosynthesis. This process takes place in the absence of molecular oxygen and is referred to as anoxygenic photosynthesis, in which exogenous electron donors are needed. These donors may be reduced sulfur compounds such as hydrogen sulfide. This paper deals with the description of this metabolic process, representatives of the above-mentioned families, and discusses the possibility using anoxygenic phototrophic microorganisms for the detoxification of toxic hydrogen sulfide. Moreover, their general characteristics, morphology, metabolism, and taxonomy are described as Citation: Kushkevych, I.; Bosáková, well as the conditions for isolation and cultivation of these microorganisms will be presented. V.; Vítˇezová,M.; Rittmann, S.K.-M.R. -
Limits of Life on Earth Some Archaea and Bacteria
Limits of life on Earth Thermophiles Temperatures up to ~55C are common, but T > 55C is Some archaea and bacteria (extremophiles) can live in associated usually with geothermal features (hot springs, environments that we would consider inhospitable to volcanic activity etc) life (heat, cold, acidity, high pressure etc) Thermophiles are organisms that can successfully live Distinguish between growth and survival: many organisms can survive intervals of harsh conditions but could not at high temperatures live permanently in such conditions (e.g. seeds, spores) Best studied extremophiles: may be relevant to the Interest: origin of life. Very hot environments tolerable for life do not seem to exist elsewhere in the Solar System • analogs for extraterrestrial environments • `extreme’ conditions may have been more common on the early Earth - origin of life? • some unusual environments (e.g. subterranean) are very widespread Extraterrestrial Life: Spring 2008 Extraterrestrial Life: Spring 2008 Grand Prismatic Spring, Yellowstone National Park Hydrothermal vents: high pressure in the deep ocean allows liquid water Colors on the edge of the at T >> 100C spring are caused by different colonies of thermophilic Vents emit superheated water (300C or cyanobacteria and algae more) that is rich in minerals Hottest water is lifeless, but `cooler’ ~50 species of such thermophiles - mostly archae with some margins support array of thermophiles: cyanobacteria and anaerobic photosynthetic bacteria oxidize sulphur, manganese, grow on methane + carbon monoxide etc… Sulfolobus: optimum T ~ 80C, minimum 60C, maximum 90C, also prefer a moderately acidic pH. Live by oxidizing sulfur Known examples can grow (i.e. multiply) at temperatures which is abundant near hot springs. -
Phytotaxa, a Synthesis of Hornwort Diversity
Phytotaxa 9: 150–166 (2010) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2010 • Magnolia Press ISSN 1179-3163 (online edition) A synthesis of hornwort diversity: Patterns, causes and future work JUAN CARLOS VILLARREAL1 , D. CHRISTINE CARGILL2 , ANDERS HAGBORG3 , LARS SÖDERSTRÖM4 & KAREN SUE RENZAGLIA5 1Department of Ecology and Evolutionary Biology, University of Connecticut, 75 North Eagleville Road, Storrs, CT 06269; [email protected] 2Centre for Plant Biodiversity Research, Australian National Herbarium, Australian National Botanic Gardens, GPO Box 1777, Canberra. ACT 2601, Australia; [email protected] 3Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, IL 60605-2496; [email protected] 4Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway; [email protected] 5Department of Plant Biology, Southern Illinois University, Carbondale, IL 62901; [email protected] Abstract Hornworts are the least species-rich bryophyte group, with around 200–250 species worldwide. Despite their low species numbers, hornworts represent a key group for understanding the evolution of plant form because the best–sampled current phylogenies place them as sister to the tracheophytes. Despite their low taxonomic diversity, the group has not been monographed worldwide. There are few well-documented hornwort floras for temperate or tropical areas. Moreover, no species level phylogenies or population studies are available for hornworts. Here we aim at filling some important gaps in hornwort biology and biodiversity. We provide estimates of hornwort species richness worldwide, identifying centers of diversity. We also present two examples of the impact of recent work in elucidating the composition and circumscription of the genera Megaceros and Nothoceros. -
Chemical Constituents of 25 Liverworts
J. Hattori Bot. Lab. No. 74: 121- 138 (Nov. 1993) CHEMICAL CONSTITUENTS OF 25 LIVERWORTS 1 1 TOSHIHIRO HASHIMOT0 , YOSHINORI ASAKAWA , KATSUYUK.l NAKASHIMA1 AND MOTOO Toru1 ABSTRACT. Twenty-five liverworts were investigated chemically and 20 new compounds isolated and their structures characterized by spectroscopic evidence, X-ray analysis and chemical correlation. The chemosystematics of each species is discussed. INTRODUCTION Liverworts are rich sources of terpenoids and lipophilic aromatic compounds; these are very valuable for chemosystematic investigation. Previously, we have reported the chemical constituents of 700 species of liverworts and discussed the chemosystematics at family and genus level (Asakawa l 982a, b; 1993, Asakawa & Inoue l 984a; l 987a). Here we report the isolation and distribution of the terpenoids and aromatic compounds of 25 liverworts and discuss the chemical markers of each species. EXPERJMENTALS The liverworts collected in Japan and other countries shown in Table 1, were purified and dried for 1 to 7 days and then ground mechanically and extracted with ether or methanol for 7 to 30 days. Each extract was filtered and the solvent evaporated to give green crude oils, followed by chromatography on silica gel or Sephadex LH-20, using n hexane-ethyl acetate (EtOAc) and methanol-chloroform (1 : 1), respectively. Each fraction was further purified by a combination of preparative TLC (n-hexane-EtOAc 4 : 1) and preparative HPLC (µ.porasil; n-hexane-EtOAc 2 : 1). The stereostructures were elucidated by the analysis of spectroscopic data (UV, IR, MS, NMR and CD) and X-ray analysis or chemical correlation. The stereostructures of each compound characterized by the above methods are shown in Chart 1 and the structural elucidation of the new compounds will be reported elsewhere. -
Periodic and Coordinated Gene Expression Between a Diazotroph and Its Diatom Host
The ISME Journal (2019) 13:118–131 https://doi.org/10.1038/s41396-018-0262-2 ARTICLE Periodic and coordinated gene expression between a diazotroph and its diatom host 1 1,2 1 3 4 Matthew J. Harke ● Kyle R. Frischkorn ● Sheean T. Haley ● Frank O. Aylward ● Jonathan P. Zehr ● Sonya T. Dyhrman1,2 Received: 11 April 2018 / Revised: 28 June 2018 / Accepted: 28 July 2018 / Published online: 16 August 2018 © International Society for Microbial Ecology 2018 Abstract In the surface ocean, light fuels photosynthetic carbon fixation of phytoplankton, playing a critical role in ecosystem processes including carbon export to the deep sea. In oligotrophic oceans, diatom–diazotroph associations (DDAs) play a keystone role in ecosystem function because diazotrophs can provide otherwise scarce biologically available nitrogen to the diatom host, fueling growth and subsequent carbon sequestration. Despite their importance, relatively little is known about the nature of these associations in situ. Here we used metatranscriptomic sequencing of surface samples from the North Pacific Subtropical Gyre (NPSG) to reconstruct patterns of gene expression for the diazotrophic symbiont Richelia and we – 1234567890();,: 1234567890();,: examined how these patterns were integrated with those of the diatom host over day night transitions. Richelia exhibited significant diel signals for genes related to photosynthesis, N2 fixation, and resource acquisition, among other processes. N2 fixation genes were significantly co-expressed with host nitrogen uptake and metabolism, as well as potential genes involved in carbon transport, which may underpin the exchange of nitrogen and carbon within this association. Patterns of expression suggested cell division was integrated between the host and symbiont across the diel cycle. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Phcogj.Com Diversity of Pteridophyta in Lubuak Mato Kuciang Padang
Pharmacogn J. 2020; 12(1):180-185 A Multifaceted Journal in the field of Natural Products and Pharmacognosy Research Article www.phcogj.com Diversity of Pteridophyta in Lubuak Mato Kuciang Padang Panjang, Sumatera Barat Skunda Diliarosta*, Rehani Ramadhani, Dewi Indriani ABSTRACT Padang Panjang city located at an altitude of 650 to 850 meters above sea level, so that weather cold and cool. Temperatures range from 17 °C to 26.1 °C and with 3,295 mm/ year of rainfall. This area is rich in the diversity of flora and fauna. Pteridophyta is one of the flora that has a unique diversity of species and has the potential for tremendous utilization such as kunda Diliarosta*, Rehani ornamental plants, medicines and vegetable plants. The study was conducted in the Lubuak Ramadhani, Dewi Indriani Mato Kuciang area of Padang Panjang City, West Sumatra, which is currently being developed for tourism. The aim of this study obtain collect data and information about the diversity of Department of Natural Sciences, Faculty of Mathematics and Natural Science, ferns in Lubuk Mato Kuciang. The activities of the study are conducted to collect species as Universitas Negeri Padang, INDONESIA. much as possible. Identification of fern species was carried out in the Laboratory of Educational Science. Mathematics and Science Faculty. Padang State University. The identification of flora Correspondence was analyzed descriptively. The identification species results were obtained through descriptive Skunda Diliarosta analysis. The results of this study obtains that there were 21 species of fern that include Department of Natural Sciences, Faculty of Mathematics and Natural Science, 11 families. -
Anthocerotophyta
Glime, J. M. 2017. Anthocerotophyta. Chapt. 2-8. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook 2-8-1 sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 5 June 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-8 ANTHOCEROTOPHYTA TABLE OF CONTENTS Anthocerotophyta ......................................................................................................................................... 2-8-2 Summary .................................................................................................................................................... 2-8-10 Acknowledgments ...................................................................................................................................... 2-8-10 Literature Cited .......................................................................................................................................... 2-8-10 2-8-2 Chapter 2-8: Anthocerotophyta CHAPTER 2-8 ANTHOCEROTOPHYTA Figure 1. Notothylas orbicularis thallus with involucres. Photo by Michael Lüth, with permission. Anthocerotophyta These plants, once placed among the bryophytes in the families. The second class is Leiosporocerotopsida, a Anthocerotae, now generally placed in the phylum class with one order, one family, and one genus. The genus Anthocerotophyta (hornworts, Figure 1), seem more Leiosporoceros differs from members of the class distantly related, and genetic evidence may even present -
Additional Analysis of Cyanobacterial Polyamines Distributions Of
Microb. Resour. Syst. Dec.32(2 ):1792016 ─ 186, 2016 Vol. 32, No. 2 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria ─ Koei Hamana1)*, Takemitsu Furuchi2), Hidenori Hayashi1) and Masaru Niitsu2) 1)Faculty of Engineering, Maebashi Institute of Technology 460-1 Kamisadori-machi, Maebashi, Gunma 371-0816, Japan 2)Faculty of Pharmaceutical Sciences, Josai University, 1-1, Keyakidai, Sakado, Saitama 350-0295, Japan To further catalogue the distribution of cyanobacterial cellular polyamines, we used HPLC and HPGC to newly analyze the acid-extracted polyamines from 14 cyanobacteria. The colony-forming Nostoc verrucosum (“Ashitsuki”) and Nostoc commune (“Ishikurage”), as well as Anabaena species (Nostocales), contained homospermidine. The thermo-halotolerant Spirulina subsalsa var. salina (Spirulinales), as well as freshwater Spirulina strains, contained spermidine. Putrescine, spermidine, and homospermidine were found in freshwater colony-forming Aphanothece sacrum (“Suizenji-nori”), whereas the halotolerant Aphanothece halophytica and Microcystis species (Chroococcales) contained spermidine alone. In addition to putrescine, spermidine, homospermidine and agmatine, thermospermine was found as a major polyamine in haloalkaliphilic Arthrospira platensis (“Spirulina”) (Oscillatoriales). In the Synechococcales, chlorophyll b-containing Prochlorococcus marina contained spermidine, and chlorophyll d-containing Acaryochloris marina contained -
Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris Marina
crossmark Downloaded from Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina Guangyu E. Chen,a Andrew Hitchcock,a Philip J. Jackson,a,b Roy R. Chaudhuri,a Mark J. Dickman,b C. Neil Hunter,a Daniel P. Canniffea* a Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom ; ChELSI Institute, Department of Chemical and Biological http://jb.asm.org/ Engineering, University of Sheffield, Sheffield, United Kingdomb ABSTRACT The major photopigment of the cyanobacterium Acaryochloris marina is chlorophyll d, while its direct biosynthetic precursor, chlorophyll a, is also present in the cell. These pigments, along with the majority of chlorophylls utilized by oxygenic pho- totrophs, carry an ethyl group at the C-8 position of the molecule, having undergone reduction of a vinyl group during biosyn- thesis. Two unrelated classes of 8-vinyl reductase involved in the biosynthesis of chlorophylls are known to exist, BciA and BciB. The genome of Acaryochloris marina contains open reading frames (ORFs) encoding proteins displaying high sequence similar- on April 20, 2016 by PERIODICALS OFFICE, MAIN LIBRARY, UNIVERSITY OF SHEFFIELD ity to BciA or BciB, although they are annotated as genes involved in transcriptional control (nmrA) and methanogenesis (frhB), respectively. These genes were introduced into an 8-vinyl chlorophyll a-producing ⌬bciB strain of Synechocystis sp. strain PCC 6803, and both were shown to restore synthesis of the pigment with an ethyl group at C-8, demonstrating their activities as 8-vi- nyl reductases. We propose that nmrA and frhB be reassigned as bciA and bciB, respectively; transcript and proteomic analysis of Acaryochloris marina reveal that both bciA and bciB are expressed and their encoded proteins are present in the cell, possibly in order to ensure that all synthesized chlorophyll pigment carries an ethyl group at C-8. -
Jahrbuch Der Geologischen Bundesanstalt
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Jahrbuch der Geologischen Bundesanstalt Jahr/Year: 2017 Band/Volume: 157 Autor(en)/Author(s): Baron-Szabo Rosemarie C. Artikel/Article: Scleractinian corals from the upper Aptian–Albian of the Garschella Formation of central Europe (western Austria; eastern Switzerland): The Albian 241- 260 JAHRBUCH DER GEOLOGISCHEN BUNDESANSTALT Jb. Geol. B.-A. ISSN 0016–7800 Band 157 Heft 1–4 S. 241–260 Wien, Dezember 2017 Scleractinian corals from the upper Aptian–Albian of the Garschella Formation of central Europe (western Austria; eastern Switzerland): The Albian ROSEMARIE CHRistiNE BARON-SZABO* 2 Text-Figures, 2 Tables, 2 Plates Österreichische Karte 1:50.000 Albian BMN / UTM western Austria 111 Dornbirn / NL 32-02-23 Feldkirch eastern Switzerland 112 Bezau / NL 32-02-24 Hohenems Garschella Formation 141 Feldkirch Taxonomy Scleractinia Contents Abstract ............................................................................................... 242 Zusammenfassung ....................................................................................... 242 Introduction............................................................................................. 242 Material................................................................................................ 243 Lithology and occurrence of the Garschella Formation ............................................................ 244 Albian scleractinian